Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009476

Physical Location & Seq

Genomic Coordinates Reverse (-)

87817623 .. 87818005

Gene Structure 383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00150420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGATAGCTGACCATTCTGTGGAACCTGCAACATGTGCTCTGTGCCTAAGGGCTCTTTCGCCCGAGAATGAGGCAATTGGAGATCTTCAAAATCAGTCCCCTGGCTCTGGGCTTGAGGATCTACCTGTAGATGGTGATTCTGCTGACAGGATAGATATCACAGCGGACAAGTTCCCGTACTACACCAAGTGGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2 zf-RING_2

Protein Analysis

65

Amino Acids

7.02

Weight (kDa)

4.06

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01980
fragaria_vesca	FvH4_6g09350 FvH4_6g09350 FvH4_6g09350
malus_domestica	MD04G1178400.v1.1 MD12G1193900.v1.1
prunus_persica	Prupe.6G298400_v2.0.a1
pyrus_communis	pycom04g15740 pycom12g18010
rosa_chinensis	RchiOBHm_Chr2g0091181 RchiOBHm_Chr3g0459741
rosa_laevigata	RLG00000016189 RLG00000025061
rosa_multiflora	Rmu_sc0000240.1_g000035
rosa_roxburghii	Rroxscaffold_2G00150420 Rroxscaffold_6G00420010
rosa_rugosa	Rorug02G0014100 Rorug03G0038100
rosa_samantha	Rh3AG096500 Rh3BG099200 Rh3CG101100 Rh3DG100500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	34
AccB7I	CCANNNNNTGG	1 cut(s)	19
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	1 cut(s)	126
AdeI	CACNNNGTG	1 cut(s)	189
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	3 cut(s)	19, 107, 131
AflIII	ACRYGT	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	89
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Alw21I	GWGCWC	1 cut(s)	40
AlwI	GGATC	1 cut(s)	126
Ama87I	CYCGRG	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	146
AvaI	CYCGRG	1 cut(s)	62
AxyI	CCTNAGG	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	40
BccI	CCATC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	102
BfaI	CTAG	1 cut(s)	196
BfmI	CTRYAG	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	34
BglII	AGATCT	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	102
BmeT110I	CYCGRG	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 107, 131
Bse21I	CCTNAGG	1 cut(s)	47
Bse8I	GATNNNNATC	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	100
BseJI	GATNNNNATC	1 cut(s)	155
BseLI	CCNNNNNNNGG	3 cut(s)	19, 107, 131
BsiHKAI	GWGCWC	1 cut(s)	40
BsiHKCI	CYCGRG	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	3 cut(s)	19, 107, 131
BsmFI	GGGAC	1 cut(s)	82
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	40, 55
Bsp143I	GATC	2 cut(s)	82, 118
BspACI	CCGC	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	24
BspMI	ACCTGC	1 cut(s)	34
BspPI	GGATC	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	2 cut(s)	82, 118
Bst2UI	CCWGG	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	47
BstKTI	GATC	2 cut(s)	85, 121
BstMBI	GATC	2 cut(s)	82, 118
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	102
BstNSI	RCATGY	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	100
BstSFI	CTRYAG	1 cut(s)	126
BstX2I	RGATCY	2 cut(s)	82, 118
BstYI	RGATCY	2 cut(s)	82, 118
Bsu36I	CCTNAGG	1 cut(s)	47
BveI	ACCTGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	1 cut(s)	33
CviJI	RGCY	4 cut(s)	8, 53, 105, 112
CviKI_1	RGCY	4 cut(s)	8, 53, 105, 112
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	2 cut(s)	84, 120
DpnII	GATC	2 cut(s)	82, 118
DraIII	CACNNNGTG	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	55
Eco32I	GATATC	1 cut(s)	157
Eco81I	CCTNAGG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	100
EcoRV	GATATC	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	55
FaeI	CATG	1 cut(s)	36
FaiI	YATR	1 cut(s)	34
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	55
FspBI	CTAG	1 cut(s)	196
Hin1II	CATG	1 cut(s)	36
HinfI	GANTC	1 cut(s)	137
HphI	GGTGA	1 cut(s)	146
HpyCH4V	TGCA	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	82, 118
LpnPI	CCDG	6 cut(s)	39, 87, 93, 114, 133, 138
MaeI	CTAG	1 cut(s)	196
MalI	GATC	2 cut(s)	84, 120
MboI	GATC	2 cut(s)	82, 118
MboII	GAAGA	1 cut(s)	77
MfeI	CAATTG	1 cut(s)	75
MflI	RGATCY	2 cut(s)	82, 118
MhlI	GDGCHC	2 cut(s)	40, 55
MluCI	AATT	1 cut(s)	75
MnlI	CCTC	2 cut(s)	64, 109
MspA1I	CMGCKG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	102
MunI	CAATTG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	2 cut(s)	82, 118
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	1 cut(s)	24
NspI	RCATGY	1 cut(s)	36
PciI	ACATGT	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	137
PflMI	CCANNNNNTGG	1 cut(s)	19
PscI	ACATGT	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	24
PsuI	RGATCY	2 cut(s)	82, 118
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
Sau3AI	GATC	2 cut(s)	82, 118
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	2 cut(s)	40, 55
SetI	ASST	3 cut(s)	10, 28, 127
SfcI	CTRYAG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	1 cut(s)	75
SsiI	CCGC	1 cut(s)	164
SspMI	CTAG	1 cut(s)	196
StyD4I	CCNGG	1 cut(s)	100
TasI	AATT	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	137
Van91I	CCANNNNNTGG	1 cut(s)	19
XceI	RCATGY	1 cut(s)	36
XspI	CTAG	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.