Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009476

Physical Location & Seq

Genomic Coordinates Forward (+)

4588766 .. 4590662

Gene Structure 1897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016189

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGTGTGGGGACTGTAAATTTTTGTACCTTGAAGATCTTGGTACCCCCACACATGACTCTTATCGGAGGAGACCGTCTGGGAGAAGAAGAGCTAGGTACAGTAGTTCCGCATCAATTGAGGATATTTTCTCACAACTGTTCTCACATATGATTAATCGGGTGCAGCAAAATCAGTCCCCTAGCTCTGGATTTGGGGATCTACCTGTAGATGGTGATTCTCCTGACAGGATATCACAGCGGACAAGTTCCCGTACTACACCAAGCGGGTCTAGAAGATGGAGACGGGTTCTCTCTGATACTGAAAGTTGTTGTGCCTATGGCGGTGATTCCGATGCTTCTGTAGACCTGCATGGTTTCTTGGATACAGAGACTTCTGTACAACCAGATTATGGAAGTGCTTTTGATAGTGATATTGACATTGATCCAATGCATGCTGGTCTCAACCCATGGAACTCAGATGACCCTGAAGAAGATGATAACGATGATGACAATGACGATGATGAGGAGGATGAAGAAGATGATGGATGGGAAAAAGTTGAGTCTGTGAAAAACATGGTCGAATCTGCAGAAGCCAATTGTCAACCGCGCAACCCTTTGATTTTGAGTTCCGCTTCCTTGCCTTCACTTGTATCACTACCTCCCTGTATTCTGCCATGGTTGAGTGCACGGAGTTCTTGCCTTCTTTGTCGTTATGAGATACCAACTGATGACAGAGACTACGAAGAGGGGAAGCGGAATGCTGGTGGTAGAGTGGAGATCCACGCCCGGTGGCAGAATGCTAGAGAGGACAGGTCTGCTGGTGTTTCTAATAGAGCTGAAGAAGGTAAAGATCATGCTTTTAGTGAAACTAGAGTGAAGCATAGGTTCCAAGTAGGTAGGGAATCTGACTCTAATACCTCCGGTGGAGAAAATAGTAAGGGGAGTTGGTTTCTTCTAGCTGCTGCTCCAATTGTCAGTCTTGTGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2 zf-RING_2

Protein Analysis

323

Amino Acids

35.77

Weight (kDa)

4.56

Isoelectric Point (pI)

65.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01980
fragaria_vesca	FvH4_6g09350 FvH4_6g09350 FvH4_6g09350
malus_domestica	MD04G1178400.v1.1 MD12G1193900.v1.1
prunus_persica	Prupe.6G298400_v2.0.a1
pyrus_communis	pycom04g15740 pycom12g18010
rosa_chinensis	RchiOBHm_Chr2g0091181 RchiOBHm_Chr3g0459741
rosa_laevigata	RLG00000016189 RLG00000025061
rosa_multiflora	Rmu_sc0000240.1_g000035
rosa_roxburghii	Rroxscaffold_2G00150420 Rroxscaffold_6G00420010
rosa_rugosa	Rorug02G0014100 Rorug03G0038100
rosa_samantha	Rh3AG096500 Rh3BG099200 Rh3CG101100 Rh3DG100500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	354
Acc65I	GGTACC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	41
AccB7I	CCANNNNNTGG	1 cut(s)	389
AccI	GTMKAC	1 cut(s)	342
AccII	CGCG	1 cut(s)	586
AciI	CCGC	7 cut(s)	108, 238, 264, 321, 584, 609, 733
AclWI	GGATC	3 cut(s)	204, 416, 751
AcsI	RAATTY	1 cut(s)	17
AcuI	CTGAAG	2 cut(s)	486, 837
AfaI	GTAC	5 cut(s)	26, 43, 98, 253, 378
AfiI	CCNNNNNNNGG	3 cut(s)	185, 209, 389
AgsI	TTSAA	1 cut(s)	32
AluBI	AGCT	4 cut(s)	92, 183, 815, 938
AluI	AGCT	4 cut(s)	92, 183, 815, 938
Alw21I	GWGCWC	1 cut(s)	667
Alw26I	GTCTC	5 cut(s)	64, 274, 362, 443, 708
Alw44I	GTGCAC	1 cut(s)	663
AlwI	GGATC	3 cut(s)	204, 416, 751
ApaLI	GTGCAC	1 cut(s)	663
ApeKI	GCWGC	3 cut(s)	163, 938, 941
ApoI	RAATTY	1 cut(s)	17
AseI	ATTAAT	1 cut(s)	153
Asp718I	GGTACC	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	588
AsuC2I	CCSGG	1 cut(s)	766
AsuHPI	GGTGA	2 cut(s)	224, 335
BaeGI	GKGCMC	1 cut(s)	667
BaeI	ACNNNNGTAYC	2 cut(s)	88, 121
BanI	GGYRCC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	667
BbvI	GCAGC	3 cut(s)	175, 925, 928
BccI	CCATC	4 cut(s)	203, 270, 515, 519
BciVI	GTATCC	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	766
BcoDI	GTCTC	5 cut(s)	64, 274, 362, 443, 708
BfaI	CTAG	6 cut(s)	93, 180, 270, 780, 849, 935
BfmI	CTRYAG	3 cut(s)	204, 339, 564
BfuAI	ACCTGC	1 cut(s)	354
BfuI	GTATCC	1 cut(s)	355
BglII	AGATCT	1 cut(s)	34
BisI	GCNGC	3 cut(s)	164, 939, 942
BlsI	GCNGC	3 cut(s)	165, 940, 943
Bme1390I	CCNGG	1 cut(s)	766
BmiI	GGNNCC	2 cut(s)	43, 866
BmrFI	CCNGG	1 cut(s)	766
BmsI	GCATC	2 cut(s)	119, 322
BpuMI	CCSGG	1 cut(s)	766
BsaI	GGTCTC	2 cut(s)	64, 443
BsaJI	CCNNGG	2 cut(s)	446, 653
BsaWI	WCCGGW	1 cut(s)	899
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 209, 389
BseDI	CCNNGG	2 cut(s)	446, 653
BseGI	GGATG	2 cut(s)	514, 530
BseLI	CCNNNNNNNGG	3 cut(s)	185, 209, 389
BseMII	CTCAG	1 cut(s)	468
BseRI	GAGGAG	2 cut(s)	82, 518
BseSI	GKGCMC	1 cut(s)	667
BseXI	GCAGC	3 cut(s)	175, 925, 928
BsgI	GTGCAG	1 cut(s)	182
Bsh1236I	CGCG	1 cut(s)	586
BshNI	GGYRCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	667
BsiSI	CCGG	2 cut(s)	766, 900
BslFI	GGGAC	2 cut(s)	23, 160
BslI	CCNNNNNNNGG	3 cut(s)	185, 209, 389
BsmAI	GTCTC	5 cut(s)	64, 274, 362, 443, 708
BsmBI	CGTCTC	1 cut(s)	274
BsmFI	GGGAC	2 cut(s)	23, 160
BsmI	GAATGC	2 cut(s)	742, 781
Bso31I	GGTCTC	2 cut(s)	64, 443
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp1407I	TGTACA	1 cut(s)	376
Bsp143I	GATC	5 cut(s)	34, 196, 421, 756, 829
Bsp19I	CCATGG	2 cut(s)	446, 653
BspACI	CCGC	7 cut(s)	108, 238, 264, 321, 584, 609, 733
BspCNI	CTCAG	1 cut(s)	467
BspFNI	CGCG	1 cut(s)	586
BspLI	GGNNCC	2 cut(s)	43, 866
BspMAI	CTGCAG	1 cut(s)	568
BspMI	ACCTGC	1 cut(s)	354
BspPI	GGATC	3 cut(s)	204, 416, 751
BspQI	GCTCTTC	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	41
BspTNI	GGTCTC	2 cut(s)	64, 443
BsrGI	TGTACA	1 cut(s)	376
BssECI	CCNNGG	2 cut(s)	446, 653
BssMI	GATC	5 cut(s)	34, 196, 421, 756, 829
BssT1I	CCWWGG	2 cut(s)	446, 653
Bst4CI	ACNGT	4 cut(s)	14, 75, 101, 138
Bst6I	CTCTTC	2 cut(s)	82, 717
BstAUI	TGTACA	1 cut(s)	376
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	1 cut(s)	454
BstDSI	CCRYGG	2 cut(s)	446, 653
BstF5I	GGATG	2 cut(s)	514, 530
BstFNI	CGCG	1 cut(s)	586
BstHHI	GCGC	1 cut(s)	588
BstKTI	GATC	5 cut(s)	37, 199, 424, 759, 832
BstMAI	GTCTC	5 cut(s)	64, 274, 362, 443, 708
BstMBI	GATC	5 cut(s)	34, 196, 421, 756, 829
BstNSI	RCATGY	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	764
BstSFI	CTRYAG	3 cut(s)	204, 339, 564
BstSLI	GKGCMC	1 cut(s)	667
BstUI	CGCG	1 cut(s)	586
BstV1I	GCAGC	3 cut(s)	175, 925, 928
BstX2I	RGATCY	3 cut(s)	34, 196, 756
BstYI	RGATCY	3 cut(s)	34, 196, 756
BsuI	GTATCC	1 cut(s)	355
BtgI	CCRYGG	2 cut(s)	446, 653
BtsCI	GGATG	2 cut(s)	514, 530
BveI	ACCTGC	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	432
CfoI	GCGC	1 cut(s)	588
Csp6I	GTAC	5 cut(s)	25, 42, 97, 252, 377
CviAII	CATG	7 cut(s)	53, 350, 431, 447, 553, 654, 833
CviJI	RGCY	5 cut(s)	92, 183, 572, 815, 938
CviKI_1	RGCY	5 cut(s)	92, 183, 572, 815, 938
CviQI	GTAC	5 cut(s)	25, 42, 97, 252, 377
DdeI	CTNAG	1 cut(s)	454
DpnI	GATC	5 cut(s)	36, 198, 423, 758, 831
DpnII	GATC	5 cut(s)	34, 196, 421, 756, 829
Eam1104I	CTCTTC	2 cut(s)	82, 717
EarI	CTCTTC	2 cut(s)	82, 717
Eco130I	CCWWGG	2 cut(s)	446, 653
Eco31I	GGTCTC	2 cut(s)	64, 443
Eco32I	GATATC	1 cut(s)	231
Eco57I	CTGAAG	2 cut(s)	486, 837
EcoRV	GATATC	1 cut(s)	231
EcoT14I	CCWWGG	2 cut(s)	446, 653
EcoT22I	ATGCAT	1 cut(s)	432
ErhI	CCWWGG	2 cut(s)	446, 653
Esp3I	CGTCTC	1 cut(s)	274
FaeI	CATG	7 cut(s)	56, 353, 434, 450, 556, 657, 836
FaqI	GGGAC	2 cut(s)	23, 160
FatI	CATG	7 cut(s)	52, 349, 430, 446, 552, 653, 832
FauI	CCCGC	1 cut(s)	257
FauNDI	CATATG	1 cut(s)	147
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	3 cut(s)	164, 939, 942
FokI	GGATG	2 cut(s)	521, 537
Fsp4HI	GCNGC	3 cut(s)	164, 939, 942
FspBI	CTAG	6 cut(s)	93, 180, 270, 780, 849, 935
GlaI	GCGC	1 cut(s)	587
GluI	GCNGC	3 cut(s)	164, 939, 942
HapII	CCGG	2 cut(s)	766, 900
HhaI	GCGC	1 cut(s)	588
Hin1II	CATG	7 cut(s)	56, 353, 434, 450, 556, 657, 836
Hin6I	GCGC	1 cut(s)	586
HinP1I	GCGC	1 cut(s)	586
HincII	GTYRAC	1 cut(s)	581
HindII	GTYRAC	1 cut(s)	581
HinfI	GANTC	7 cut(s)	56, 215, 326, 539, 560, 881, 887
HpaII	CCGG	2 cut(s)	766, 900
HphI	GGTGA	2 cut(s)	224, 335
Hpy166II	GTNNAC	3 cut(s)	343, 581, 665
Hpy188I	TCNGA	5 cut(s)	66, 295, 331, 457, 886
Hpy188III	TCNNGA	3 cut(s)	186, 221, 270
Hpy8I	GTNNAC	3 cut(s)	343, 581, 665
HpyAV	CCTTC	3 cut(s)	630, 689, 815
HpyCH4III	ACNGT	4 cut(s)	14, 75, 101, 138
HpyCH4V	TGCA	5 cut(s)	163, 349, 430, 566, 665
HpyF3I	CTNAG	1 cut(s)	454
Hsp92II	CATG	7 cut(s)	56, 353, 434, 450, 556, 657, 836
HspAI	GCGC	1 cut(s)	586
KpnI	GGTACC	1 cut(s)	45
Kzo9I	GATC	5 cut(s)	34, 196, 421, 756, 829
LguI	GCTCTTC	1 cut(s)	82
LmnI	GCTCC	1 cut(s)	949
Lsp1109I	GCAGC	3 cut(s)	175, 925, 928
LweI	GCATC	2 cut(s)	119, 322
MaeI	CTAG	6 cut(s)	93, 180, 270, 780, 849, 935
MalI	GATC	5 cut(s)	36, 198, 423, 758, 831
MboI	GATC	5 cut(s)	34, 196, 421, 756, 829
MfeI	CAATTG	3 cut(s)	114, 574, 948
MflI	RGATCY	3 cut(s)	34, 196, 756
MhlI	GDGCHC	1 cut(s)	667
MluCI	AATT	4 cut(s)	17, 114, 574, 948
MlyI	GAGTC	3 cut(s)	50, 548, 881
MnlI	CCTC	8 cut(s)	60, 112, 496, 499, 648, 718, 778, 907
Mph1103I	ATGCAT	1 cut(s)	432
MseI	TTAA	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	238
MspI	CCGG	2 cut(s)	766, 900
MspR9I	CCNGG	1 cut(s)	766
MunI	CAATTG	3 cut(s)	114, 574, 948
Mva1269I	GAATGC	2 cut(s)	742, 781
MvnI	CGCG	1 cut(s)	586
NciI	CCSGG	1 cut(s)	766
NcoI	CCATGG	2 cut(s)	446, 653
NdeI	CATATG	1 cut(s)	147
NdeII	GATC	5 cut(s)	34, 196, 421, 756, 829
NlaIII	CATG	7 cut(s)	56, 353, 434, 450, 556, 657, 836
NlaIV	GGNNCC	2 cut(s)	43, 866
NsiI	ATGCAT	1 cut(s)	432
NspI	RCATGY	1 cut(s)	434
PaeI	GCATGC	1 cut(s)	434
PciSI	GCTCTTC	1 cut(s)	82
PctI	GAATGC	2 cut(s)	742, 781
PfeI	GAWTC	4 cut(s)	215, 326, 560, 881
PflMI	CCANNNNNTGG	1 cut(s)	389
PkrI	GCNGC	3 cut(s)	165, 940, 943
PleI	GAGTC	3 cut(s)	50, 547, 881
PpsI	GAGTC	3 cut(s)	50, 547, 881
PshBI	ATTAAT	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	43, 866
PstI	CTGCAG	1 cut(s)	568
PsuI	RGATCY	3 cut(s)	34, 196, 756
RsaI	GTAC	5 cut(s)	26, 43, 98, 253, 378
RsaNI	GTAC	5 cut(s)	25, 42, 97, 252, 377
SapI	GCTCTTC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	3 cut(s)	164, 939, 942
Sau3AI	GATC	5 cut(s)	34, 196, 421, 756, 829
SchI	GAGTC	3 cut(s)	50, 548, 881
ScrFI	CCNGG	1 cut(s)	766
SduI	GDGCHC	1 cut(s)	667
SfaNI	GCATC	2 cut(s)	119, 322
SfcI	CTRYAG	3 cut(s)	204, 339, 564
SphI	GCATGC	1 cut(s)	434
Sse9I	AATT	4 cut(s)	17, 114, 574, 948
SsiI	CCGC	7 cut(s)	108, 238, 264, 321, 584, 609, 733
SspMI	CTAG	6 cut(s)	93, 180, 270, 780, 849, 935
StyD4I	CCNGG	1 cut(s)	764
StyI	CCWWGG	2 cut(s)	446, 653
TaaI	ACNGT	4 cut(s)	14, 75, 101, 138
TaqI	TCGA	1 cut(s)	558
TasI	AATT	4 cut(s)	17, 114, 574, 948
TatI	WGTACW	1 cut(s)	376
TfiI	GAWTC	4 cut(s)	215, 326, 560, 881
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseI	GCWGC	3 cut(s)	163, 938, 941
TspDTI	ATGAA	1 cut(s)	525
TspGWI	ACGGA	1 cut(s)	682
Van91I	CCANNNNNTGG	1 cut(s)	389
VneI	GTGCAC	1 cut(s)	663
VspI	ATTAAT	1 cut(s)	153
XapI	RAATTY	1 cut(s)	17
XbaI	TCTAGA	1 cut(s)	269
XceI	RCATGY	1 cut(s)	434
XmiI	GTMKAC	1 cut(s)	342
XspI	CTAG	6 cut(s)	93, 180, 270, 780, 849, 935
Zsp2I	ATGCAT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.