Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010288

Physical Location & Seq

Genomic Coordinates Forward (+)

416917 .. 418666

Gene Structure 1750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G02110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGATAATCTACTCTGCGAAGAATCTTGGCCCGCGAGTCCTTTAACCCCGGAGCCTTTACCAAACTTCCGTCACCGTTCTCACGACAATGACGTCGTGAAGATGTATCCAGAGATAGACGCAGCGACGATGGAGGAAGCCATTGCTATGGACTTAGAGAAAGAATTATGTTTTAACAATCATGGAGACAAGTTTGTTGAGTTTTTCGTCTCAAAGAAGTTAACCGATTATAGGTTCCATGCGTTTCAATGGCTAATCCAGACTCGGAGTCGGCTAAATCTTTCATATGAAACGGTATTTTCCGCCGCTAATTGTTTTGATCGGTTCGTCTACATGACTTGCTGTGACGAATGGACGAATTGGATGGTGGAACTAGTTGCGGTAACTTCATTATCGATCGCATCAAAGTTCAATGAAGTTACCACTCCATTACTCGAAGAACTTGAAATGGAAGGTTTAACTCATATGTTTCACGTTAATACAGTTGCTCAGATGGAACTCATAATTTTGAAAGCTCTCGAATGGCGTGTGAACGCGGTTACGAGTTATACTTTTTCGCAAACCCTTGTGTCGAAGATCGGTATGGTTGGGGATCATATGATCATGAATCGAATTACAAATCATCTGCTTGATGTTATATGCGATTTAAAAATGCTTCAATACCCACCAAGCGTTGTGGCCACTGCTGCTATATGGATTCTCATGGAAGACAAGGTGTGTCGAGAAAGTATCATGAATCTCTTTGAACAAAATCATAAGGAAAAAATCGTGAAATGTGTTGATGGGATGAAAAATCGAGACATTGATCATCAGTCGTCGAGAAGAAGATACAGTGAAGGGAGGAGTATTCTGAGTCTGTTGCAGCGAGGCGATGTGATGAATATGAATGGGGATTATAACGTTGAAGATCTCTCTAAAATCTTTCAGATTTTCCGATACGAAAAGAAGAAGAGGGATAGAGGAAACCACCAAGACAACATTCGTCCGGCAAAAAGAATGACAATTGAAATGTCAAATTACATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051726 GO:0061458 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

341

Amino Acids

39.91

Weight (kDa)

5.71

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	93 - 149	1.3e-09	Cyclin, N-terminal domain
Cyclin_C	PF02984	151 - 238	9.5e-06	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02110 AT5G02110
fragaria_vesca	FvH4_6g13230
malus_domestica	MD04G1133300.v1.1 MD12G1146100.v1.1
prunus_persica	Prupe.6G259300_v2.0.a1
pyrus_communis	pycom12g14010
rosa_chinensis	RchiOBHm_Chr3g0466061
rosa_laevigata	RLG00000024606
rosa_multiflora	Rmu_sc0005135.1_g000003 Rmu_sc0007597.1_g000002 Rmu_sc0007597.1_g000004 Rmu_sc0029260.1_g000002
rosa_roxburghii	Rroxscaffold_6G00414830
rosa_rugosa	Rorug03G0079200
rosa_samantha	Rh3BG146400 Rh3BG146500 Rh3CG147300 Rh3DG147300 Rh3DG147400
rosa_wichuraiana	Rw3G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	897
AasI	GACNNNNNNGTC	1 cut(s)	92
AatII	GACGTC	1 cut(s)	96
AccI	GTMKAC	1 cut(s)	330
AccII	CGCG	2 cut(s)	35, 536
AciI	CCGC	5 cut(s)	33, 303, 306, 380, 536
AclI	AACGTT	1 cut(s)	900
AclWI	GGATC	1 cut(s)	600
AcoI	YGGCCR	1 cut(s)	678
AcyI	GRCGYC	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	8 cut(s)	248, 412, 446, 511, 659, 746, 905, 1007
AhdI	GACNNNNNGTC	1 cut(s)	267
AhlI	ACTAGT	1 cut(s)	373
AjuI	GAANNNNNNNTTGG	2 cut(s)	963, 995
AluBI	AGCT	1 cut(s)	515
AluI	AGCT	1 cut(s)	515
Alw26I	GTCTC	3 cut(s)	180, 214, 792
AlwI	GGATC	1 cut(s)	600
AoxI	GGCC	2 cut(s)	29, 678
ApeKI	GCWGC	3 cut(s)	122, 686, 862
AspS9I	GGNCC	1 cut(s)	30
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	65
BalI	TGGCCA	1 cut(s)	680
BbsI	GAAGAC	1 cut(s)	714
BbvI	GCAGC	3 cut(s)	134, 673, 874
BccI	CCATC	4 cut(s)	124, 358, 487, 776
BciVI	GTATCC	1 cut(s)	117
BclI	TGATCA	2 cut(s)	600, 805
BcnI	CCSGG	1 cut(s)	50
BcoDI	GTCTC	3 cut(s)	180, 214, 792
BcuI	ACTAGT	1 cut(s)	373
BfaI	CTAG	1 cut(s)	374
BfuI	GTATCC	1 cut(s)	117
BglII	AGATCT	1 cut(s)	907
BisI	GCNGC	4 cut(s)	123, 306, 687, 863
BlsI	GCNGC	4 cut(s)	124, 307, 688, 864
Bme1390I	CCNGG	1 cut(s)	50
BmeRI	GACNNNNNGTC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	2 cut(s)	54, 236
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	410
BpiI	GAAGAC	1 cut(s)	714
BpuMI	CCSGG	1 cut(s)	50
Bsa29I	ATCGAT	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse3DI	GCAATG	1 cut(s)	141
BseCI	ATCGAT	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	2 cut(s)	369, 792
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	2 cut(s)	503, 842
BseRI	GAGGAG	1 cut(s)	856
BseXI	GCAGC	3 cut(s)	134, 673, 874
Bsh1236I	CGCG	2 cut(s)	35, 536
Bsh1285I	CGRYCG	1 cut(s)	399
BshFI	GGCC	2 cut(s)	31, 680
BshVI	ATCGAT	1 cut(s)	395
BsiEI	CGRYCG	1 cut(s)	399
BsiSI	CCGG	2 cut(s)	50, 986
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	3 cut(s)	180, 214, 792
BsmBI	CGTCTC	1 cut(s)	214
BsnI	GGCC	2 cut(s)	31, 680
Bsp143I	GATC	7 cut(s)	319, 396, 576, 592, 600, 805, 907
BspACI	CCGC	5 cut(s)	33, 303, 306, 380, 536
BspANI	GGCC	2 cut(s)	31, 680
BspCNI	CTCAG	2 cut(s)	502, 843
BspDI	ATCGAT	1 cut(s)	395
BspFNI	CGCG	2 cut(s)	35, 536
BspHI	TCATGA	2 cut(s)	603, 732
BspLI	GGNNCC	2 cut(s)	54, 236
BspPI	GGATC	1 cut(s)	600
BsrDI	GCAATG	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	7 cut(s)	319, 396, 576, 592, 600, 805, 907
BssNI	GRCGYC	1 cut(s)	93
Bst4CI	ACNGT	4 cut(s)	77, 295, 484, 833
Bst6I	CTCTTC	1 cut(s)	944
BstACI	GRCGYC	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	3 cut(s)	154, 489, 851
BstF5I	GGATG	2 cut(s)	369, 792
BstFNI	CGCG	2 cut(s)	35, 536
BstKTI	GATC	7 cut(s)	322, 399, 579, 595, 603, 808, 910
BstMAI	GTCTC	3 cut(s)	180, 214, 792
BstMBI	GATC	7 cut(s)	319, 396, 576, 592, 600, 805, 907
BstMCI	CGRYCG	1 cut(s)	399
BstMWI	GCNNNNNNNGC	1 cut(s)	686
BstSCI	CCNGG	1 cut(s)	48
BstUI	CGCG	2 cut(s)	35, 536
BstV1I	GCAGC	3 cut(s)	134, 673, 874
BstV2I	GAAGAC	1 cut(s)	714
BstX2I	RGATCY	1 cut(s)	907
BstXI	CCANNNNNNTGG	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	907
Bsu15I	ATCGAT	1 cut(s)	395
BsuI	GTATCC	1 cut(s)	117
BsuRI	GGCC	2 cut(s)	31, 680
BsuTUI	ATCGAT	1 cut(s)	395
BtgZI	GCGATG	1 cut(s)	885
BtsCI	GGATG	2 cut(s)	369, 792
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	2 cut(s)	681, 838
Cac8I	GCNNGC	1 cut(s)	33
CciI	TCATGA	2 cut(s)	603, 732
Cfr13I	GGNCC	1 cut(s)	30
ClaI	ATCGAT	1 cut(s)	395
CseI	GACGC	1 cut(s)	128
CspCI	CAANNNNNGTGG	2 cut(s)	657, 692
CviAII	CATG	6 cut(s)	182, 239, 334, 604, 703, 733
CviJI	RGCY	7 cut(s)	31, 55, 140, 253, 274, 515, 680
CviKI_1	RGCY	7 cut(s)	31, 55, 140, 253, 274, 515, 680
DdeI	CTNAG	3 cut(s)	154, 489, 851
DpnI	GATC	7 cut(s)	321, 398, 578, 594, 602, 807, 909
DpnII	GATC	7 cut(s)	319, 396, 576, 592, 600, 805, 907
DraI	TTTAAA	1 cut(s)	648
DrdI	GACNNNNNNGTC	1 cut(s)	92
DriI	GACNNNNNGTC	1 cut(s)	267
DseDI	GACNNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	678
Eam1104I	CTCTTC	1 cut(s)	944
Eam1105I	GACNNNNNGTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	944
EciI	GGCGGA	1 cut(s)	292
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	6 cut(s)	185, 242, 337, 607, 706, 736
FatI	CATG	6 cut(s)	181, 238, 333, 603, 702, 732
FauI	CCCGC	1 cut(s)	40
FauNDI	CATATG	3 cut(s)	286, 465, 597
FbaI	TGATCA	2 cut(s)	600, 805
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	4 cut(s)	123, 306, 687, 863
FokI	GGATG	2 cut(s)	376, 799
Fsp4HI	GCNGC	4 cut(s)	123, 306, 687, 863
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	4 cut(s)	123, 306, 687, 863
HaeIII	GGCC	2 cut(s)	31, 680
HapII	CCGG	2 cut(s)	50, 986
HgaI	GACGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	6 cut(s)	185, 242, 337, 607, 706, 736
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	8 cut(s)	23, 37, 262, 268, 607, 697, 736, 853
HpaI	GTTAAC	1 cut(s)	222
HpaII	CCGG	2 cut(s)	50, 986
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	3 cut(s)	222, 331, 532
Hpy188I	TCNGA	5 cut(s)	267, 492, 852, 927, 935
Hpy8I	GTNNAC	3 cut(s)	222, 331, 532
Hpy99I	CGWCG	3 cut(s)	98, 130, 820
HpyAV	CCTTC	2 cut(s)	446, 830
HpyCH4III	ACNGT	4 cut(s)	77, 295, 484, 833
HpyCH4IV	ACGT	3 cut(s)	93, 474, 900
HpyCH4V	TGCA	1 cut(s)	862
HpyF10VI	GCNNNNNNNGC	1 cut(s)	686
HpyF3I	CTNAG	3 cut(s)	154, 489, 851
HpySE526I	ACGT	3 cut(s)	93, 474, 900
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	6 cut(s)	185, 242, 337, 607, 706, 736
Ksp22I	TGATCA	2 cut(s)	600, 805
KspAI	GTTAAC	1 cut(s)	222
Kzo9I	GATC	7 cut(s)	319, 396, 576, 592, 600, 805, 907
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	4 cut(s)	63, 123, 272, 999
Lsp1109I	GCAGC	3 cut(s)	134, 673, 874
LweI	GCATC	1 cut(s)	410
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	3 cut(s)	93, 474, 900
MaeIII	GTNAC	5 cut(s)	71, 344, 382, 418, 538
MalI	GATC	7 cut(s)	321, 398, 578, 594, 602, 807, 909
MboI	GATC	7 cut(s)	319, 396, 576, 592, 600, 805, 907
MfeI	CAATTG	1 cut(s)	1002
MflI	RGATCY	1 cut(s)	907
MlsI	TGGCCA	1 cut(s)	680
MluCI	AATT	7 cut(s)	164, 310, 358, 504, 612, 1002, 1015
MluNI	TGGCCA	1 cut(s)	680
MlyI	GAGTC	4 cut(s)	46, 256, 277, 862
MnlI	CCTC	5 cut(s)	127, 834, 860, 945, 953
Mox20I	TGGCCA	1 cut(s)	680
MscI	TGGCCA	1 cut(s)	680
MseI	TTAA	6 cut(s)	44, 174, 221, 458, 477, 647
MslI	CAYNNNNRTG	2 cut(s)	87, 146
Msp20I	TGGCCA	1 cut(s)	680
MspI	CCGG	2 cut(s)	50, 986
MspR9I	CCNGG	1 cut(s)	50
MunI	CAATTG	1 cut(s)	1002
MvnI	CGCG	2 cut(s)	35, 536
MwoI	GCNNNNNNNGC	1 cut(s)	686
NciI	CCSGG	1 cut(s)	50
NdeI	CATATG	3 cut(s)	286, 465, 597
NdeII	GATC	7 cut(s)	319, 396, 576, 592, 600, 805, 907
NlaIII	CATG	6 cut(s)	185, 242, 337, 607, 706, 736
NlaIV	GGNNCC	2 cut(s)	54, 236
NmuCI	GTSAC	2 cut(s)	71, 344
PagI	TCATGA	2 cut(s)	603, 732
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	4 cut(s)	23, 607, 697, 736
PkrI	GCNGC	4 cut(s)	124, 307, 688, 864
Ple19I	CGATCG	1 cut(s)	399
PleI	GAGTC	4 cut(s)	45, 256, 276, 861
PpsI	GAGTC	4 cut(s)	45, 256, 276, 861
PsiI	TTATAA	1 cut(s)	897
Psp1406I	AACGTT	1 cut(s)	900
PspN4I	GGNNCC	2 cut(s)	54, 236
PspPI	GGNCC	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	907
PvuI	CGATCG	1 cut(s)	399
RseI	CAYNNNNRTG	2 cut(s)	87, 146
SaqAI	TTAA	6 cut(s)	44, 174, 221, 458, 477, 647
SatI	GCNGC	4 cut(s)	123, 306, 687, 863
Sau3AI	GATC	7 cut(s)	319, 396, 576, 592, 600, 805, 907
Sau96I	GGNCC	1 cut(s)	30
SchI	GAGTC	4 cut(s)	46, 256, 277, 862
ScrFI	CCNGG	1 cut(s)	50
SetI	ASST	7 cut(s)	96, 236, 457, 477, 517, 717, 903
SfaNI	GCATC	1 cut(s)	410
SmiMI	CAYNNNNRTG	2 cut(s)	87, 146
SpeI	ACTAGT	1 cut(s)	373
Sse9I	AATT	7 cut(s)	164, 310, 358, 504, 612, 1002, 1015
SsiI	CCGC	5 cut(s)	33, 303, 306, 380, 536
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	48
TaaI	ACNGT	4 cut(s)	77, 295, 484, 833
TaiI	ACGT	3 cut(s)	96, 477, 903
TaqI	TCGA	8 cut(s)	395, 435, 519, 572, 610, 721, 796, 818
TasI	AATT	7 cut(s)	164, 310, 358, 504, 612, 1002, 1015
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	4 cut(s)	23, 607, 697, 736
Tru1I	TTAA	6 cut(s)	44, 174, 221, 458, 477, 647
Tru9I	TTAA	6 cut(s)	44, 174, 221, 458, 477, 647
TscAI	CASTG	2 cut(s)	688, 838
TseFI	GTSAC	2 cut(s)	71, 344
TseI	GCWGC	3 cut(s)	122, 686, 862
Tsp45I	GTSAC	2 cut(s)	71, 344
TspDTI	ATGAA	9 cut(s)	273, 303, 378, 429, 620, 749, 803, 893, 899
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	2 cut(s)	688, 838
XmiI	GTMKAC	1 cut(s)	330
XspI	CTAG	1 cut(s)	374
ZraI	GACGTC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.