Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007597.1

Orthogroup ID

OG0010288

Physical Location & Seq

Genomic Coordinates Forward (+)

8231 .. 9977

Gene Structure 1747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007597.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atggatcaaagtttgctctgcgatgaggtgtggccttccagccctttgacgactgctatgaactacatgattgattgtggaacattatcaatgtatgcaagaagtaaggatgactatgatgaatcttttactatatgcttggagaaggagatgagttacatgccccaaccgaactacgtagaaaatctctgctcaaatcatttggtctttgctaggtttaaaagcattcaatggtttatcaaggctgagttggtcaagtgccagaagctcatggaagcacaagcagtagctgatgattgcttctacaacttactagctcacagggttttccatttctgcccttcaagtcccacaactgtgttgctgaaggagcggattaacttttctcattatcatgttgatttctccctctttaagatgagagctcaaagaatggacactgcggaatcaacagcaaggatctgccggaagagaaagagggaagaagaagaagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051726 GO:0061458 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

165

Amino Acids

19.46

Weight (kDa)

5.76

Isoelectric Point (pI)

57.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02110 AT5G02110
fragaria_vesca	FvH4_6g13230
malus_domestica	MD04G1133300.v1.1 MD12G1146100.v1.1
prunus_persica	Prupe.6G259300_v2.0.a1
pyrus_communis	pycom12g14010
rosa_chinensis	RchiOBHm_Chr3g0466061
rosa_laevigata	RLG00000024606
rosa_multiflora	Rmu_sc0005135.1_g000003 Rmu_sc0007597.1_g000002 Rmu_sc0007597.1_g000004 Rmu_sc0029260.1_g000002
rosa_roxburghii	Rroxscaffold_6G00414830
rosa_rugosa	Rorug03G0079200
rosa_samantha	Rh3BG146400 Rh3BG146500 Rh3CG147300 Rh3DG147300 Rh3DG147400
rosa_wichuraiana	Rw3G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	373
AciI	CCGC	2 cut(s)	373, 443
AclWI	GGATC	2 cut(s)	12, 467
AcuI	CTGAAG	1 cut(s)	386
AgsI	TTSAA	2 cut(s)	230, 345
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	4 cut(s)	268, 290, 317, 425
AluI	AGCT	4 cut(s)	268, 290, 317, 425
Alw21I	GWGCWC	1 cut(s)	427
AlwI	GGATC	2 cut(s)	12, 467
AlwNI	CAGNNNCTG	1 cut(s)	290
AoxI	GGCC	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	427
Bbv12I	GWGCWC	1 cut(s)	427
BfaI	CTAG	2 cut(s)	213, 314
BsaAI	YACGTR	1 cut(s)	178
BseGI	GGATG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	427
BsiSI	CCGG	1 cut(s)	466
BslFI	GGGAC	1 cut(s)	333
BsmFI	GGGAC	1 cut(s)	333
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	2 cut(s)	4, 459
BspACI	CCGC	2 cut(s)	373, 443
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	1 cut(s)	238
BspPI	GGATC	2 cut(s)	12, 467
BsrBI	CCGCTC	1 cut(s)	373
BssMI	GATC	2 cut(s)	4, 459
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	2 cut(s)	464, 486
BstBAI	YACGTR	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	2 cut(s)	7, 462
BstMBI	GATC	2 cut(s)	4, 459
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNSI	RCATGY	1 cut(s)	163
BstSNI	TACGTA	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	459
BsuRI	GGCC	1 cut(s)	34
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	115
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	1 cut(s)	438
CaiI	CAGNNNCTG	1 cut(s)	290
CviAII	CATG	4 cut(s)	67, 160, 271, 395
CviJI	RGCY	7 cut(s)	34, 42, 245, 268, 290, 317, 425
CviKI_1	RGCY	7 cut(s)	34, 42, 245, 268, 290, 317, 425
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	2 cut(s)	6, 461
DpnII	GATC	2 cut(s)	4, 459
DraI	TTTAAA	1 cut(s)	220
Eam1104I	CTCTTC	2 cut(s)	464, 486
EarI	CTCTTC	2 cut(s)	464, 486
Ecl136II	GAGCTC	1 cut(s)	425
Eco105I	TACGTA	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	427
Eco53kI	GAGCTC	1 cut(s)	425
Eco57I	CTGAAG	1 cut(s)	386
EcoICRI	GAGCTC	1 cut(s)	425
EcoT38I	GRGCYC	1 cut(s)	427
FaeI	CATG	4 cut(s)	70, 163, 274, 398
FaiI	YATR	9 cut(s)	59, 68, 96, 117, 134, 136, 161, 272, 396
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	4 cut(s)	66, 159, 270, 394
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	427
FspBI	CTAG	2 cut(s)	213, 314
HaeIII	GGCC	1 cut(s)	34
HapII	CCGG	1 cut(s)	466
Hin1II	CATG	4 cut(s)	70, 163, 274, 398
HinfI	GANTC	2 cut(s)	122, 446
HpaII	CCGG	1 cut(s)	466
HpyAV	CCTTC	4 cut(s)	45, 139, 351, 361
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	4 cut(s)	70, 163, 274, 398
Kzo9I	GATC	2 cut(s)	4, 459
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	4 cut(s)	52, 275, 307, 479
MaeI	CTAG	2 cut(s)	213, 314
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	2 cut(s)	6, 461
MbiI	CCGCTC	1 cut(s)	373
MboI	GATC	2 cut(s)	4, 459
MboII	GAAGA	3 cut(s)	481, 494, 497
MflI	RGATCY	1 cut(s)	459
MhlI	GDGCHC	1 cut(s)	427
MnlI	CCTC	3 cut(s)	19, 419, 471
MseI	TTAA	3 cut(s)	219, 378, 414
MslI	CAYNNNNRTG	2 cut(s)	356, 393
MspI	CCGG	1 cut(s)	466
Mva1269I	GAATGC	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	370
NdeII	GATC	2 cut(s)	4, 459
NlaIII	CATG	4 cut(s)	70, 163, 274, 398
NspI	RCATGY	1 cut(s)	163
OliI	CACNNNNGTG	1 cut(s)	356
PctI	GAATGC	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	122, 446
Ppu21I	YACGTR	1 cut(s)	178
Psp124BI	GAGCTC	1 cut(s)	427
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	459
RseI	CAYNNNNRTG	2 cut(s)	356, 393
SacI	GAGCTC	1 cut(s)	427
SaqAI	TTAA	3 cut(s)	219, 378, 414
Sau3AI	GATC	2 cut(s)	4, 459
SduI	GDGCHC	1 cut(s)	427
SetI	ASST	7 cut(s)	30, 180, 218, 270, 292, 319, 427
SmiMI	CAYNNNNRTG	2 cut(s)	356, 393
SnaBI	TACGTA	1 cut(s)	178
SsiI	CCGC	2 cut(s)	373, 443
SspMI	CTAG	2 cut(s)	213, 314
SstI	GAGCTC	1 cut(s)	427
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	1 cut(s)	180
TfiI	GAWTC	2 cut(s)	122, 446
Tru1I	TTAA	3 cut(s)	219, 378, 414
Tru9I	TTAA	3 cut(s)	219, 378, 414
TscAI	CASTG	1 cut(s)	445
TspDTI	ATGAA	2 cut(s)	74, 135
TspRI	CASTG	1 cut(s)	445
XceI	RCATGY	1 cut(s)	163
XspI	CTAG	2 cut(s)	213, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.