Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010288

Physical Location & Seq

Genomic Coordinates Forward (+)

12651687 .. 12652139

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG147300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGATCAAAGTTTGCTCTGCGATGAGGTGTGGCCTTCCAGCCCTTTGACGACTGCTATGAACTACATGATTGATTGTGGAACATTATCAATGTATGCAAGAAGTAAGGATGACTATGATGAATCTTTTACTATATGCTTGGAGAAGGAGATGAGTTACATGCCCCAACCGAACTACGTAGAAAATCTCTGCTCAAATCATTTGGTCATTGCTAGGTTTAAAAGCATTCAATGGTTTATCAAGTCTAGAAGCCGCTTGAACCTCTCCCTTAGAACTGTTTTTTATGCTGCAAACTACCTTGATCGCTTCATATCTATGAATCACTGTAATGTAAGCAATATGATATACCTGTATATATGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051726 GO:0061458 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

121

Amino Acids

14.23

Weight (kDa)

5.56

Isoelectric Point (pI)

61.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	43 - 113	1.4e-07	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02110 AT5G02110
fragaria_vesca	FvH4_6g13230
malus_domestica	MD04G1133300.v1.1 MD12G1146100.v1.1
prunus_persica	Prupe.6G259300_v2.0.a1
pyrus_communis	pycom12g14010
rosa_chinensis	RchiOBHm_Chr3g0466061
rosa_laevigata	RLG00000024606
rosa_multiflora	Rmu_sc0005135.1_g000003 Rmu_sc0007597.1_g000002 Rmu_sc0007597.1_g000004 Rmu_sc0029260.1_g000002
rosa_roxburghii	Rroxscaffold_6G00414830
rosa_rugosa	Rorug03G0079200
rosa_samantha	Rh3BG146400 Rh3BG146500 Rh3CG147300 Rh3DG147300 Rh3DG147400
rosa_wichuraiana	Rw3G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	253
AclWI	GGATC	1 cut(s)	12
AgsI	TTSAA	2 cut(s)	230, 259
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	274
BfaI	CTAG	2 cut(s)	213, 246
BisI	GCNGC	2 cut(s)	253, 288
BlsI	GCNGC	2 cut(s)	254, 289
BsaAI	YACGTR	1 cut(s)	178
Bse3DI	GCAATG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	207
BseXI	GCAGC	1 cut(s)	274
BshFI	GGCC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	4, 301
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	1 cut(s)	34
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	207
BssMI	GATC	2 cut(s)	4, 301
Bst4CI	ACNGT	2 cut(s)	277, 326
BstBAI	YACGTR	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	2 cut(s)	7, 304
BstMBI	GATC	2 cut(s)	4, 301
BstNSI	RCATGY	1 cut(s)	163
BstSNI	TACGTA	1 cut(s)	178
BstV1I	GCAGC	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	34
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	322
CviAII	CATG	2 cut(s)	67, 160
CviJI	RGCY	3 cut(s)	34, 42, 252
CviKI_1	RGCY	3 cut(s)	34, 42, 252
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	2 cut(s)	6, 303
DpnII	GATC	2 cut(s)	4, 301
DraI	TTTAAA	1 cut(s)	220
Eco105I	TACGTA	1 cut(s)	178
FaeI	CATG	2 cut(s)	70, 163
FatI	CATG	2 cut(s)	66, 159
Fnu4HI	GCNGC	2 cut(s)	253, 288
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	2 cut(s)	253, 288
FspBI	CTAG	2 cut(s)	213, 246
GluI	GCNGC	2 cut(s)	253, 288
HaeIII	GGCC	1 cut(s)	34
Hin1II	CATG	2 cut(s)	70, 163
HinfI	GANTC	2 cut(s)	122, 319
Hpy188III	TCNNGA	1 cut(s)	246
HpyAV	CCTTC	2 cut(s)	45, 139
HpyCH4III	ACNGT	2 cut(s)	277, 326
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	2 cut(s)	98, 290
HpyF3I	CTNAG	1 cut(s)	269
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	70, 163
Kzo9I	GATC	2 cut(s)	4, 301
LpnPI	CCDG	2 cut(s)	52, 362
Lsp1109I	GCAGC	1 cut(s)	274
MaeI	CTAG	2 cut(s)	213, 246
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	2 cut(s)	6, 303
MboI	GATC	2 cut(s)	4, 301
MnlI	CCTC	2 cut(s)	19, 272
MseI	TTAA	1 cut(s)	219
MslI	CAYNNNNRTG	2 cut(s)	314, 327
Mva1269I	GAATGC	1 cut(s)	225
NdeII	GATC	2 cut(s)	4, 301
NlaIII	CATG	2 cut(s)	70, 163
NspI	RCATGY	1 cut(s)	163
PctI	GAATGC	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	122, 319
PkrI	GCNGC	2 cut(s)	254, 289
Ppu21I	YACGTR	1 cut(s)	178
RseI	CAYNNNNRTG	2 cut(s)	314, 327
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	2 cut(s)	253, 288
Sau3AI	GATC	2 cut(s)	4, 301
SetI	ASST	6 cut(s)	30, 180, 218, 264, 300, 351
SmiMI	CAYNNNNRTG	2 cut(s)	314, 327
SnaBI	TACGTA	1 cut(s)	178
SsiI	CCGC	1 cut(s)	253
SspMI	CTAG	2 cut(s)	213, 246
TaaI	ACNGT	2 cut(s)	277, 326
TaiI	ACGT	1 cut(s)	180
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	2 cut(s)	122, 319
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	1 cut(s)	329
TseI	GCWGC	1 cut(s)	287
TspDTI	ATGAA	4 cut(s)	74, 135, 298, 332
TspRI	CASTG	1 cut(s)	329
XbaI	TCTAGA	1 cut(s)	245
XceI	RCATGY	1 cut(s)	163
XspI	CTAG	2 cut(s)	213, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.