RchiOBHm_Chr3g0466061

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0010288
Physical Location & Seq
Forward (+)
12648309 .. 12650055
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43217

Sequence Viewer

Length: 948 bp
ATGGATCAAAGTTTGCTCTGCGATGAGGTGTGGCCTTCCAGCCCTTTGACGACTGCTATGAACTACATGATTGATTGTGGAACATTATCAATGTATGCAAGAAGTAAGGATGACTATGATGAATCTTTTACTATATGCTTGGAGAAGGAGATGAGTTACATGCCCCAACCGAACTACGTAGAAAATCTCTGCTCAAATCATTTGGTCATTGCTAGGTTTAAAAGCATTCAATGGTTTATCAAGCCATGGAAATATTGGATGGTGGAATTGTTGTCTATTGCTTGCTTATCCATTGCCTCCAAGTTTAATGACACCTGCTCTCCTACCTTGCTTGAAATTCAGGATCTGGACTACTCTTTTGACTCCATCACAATCCAACGAATGGAAATAATGGTGCTAGAGGCATTAGGATGGCGCATTGCTTCTACAACAGCTTACTCGTACCTAGAACTGCTGTTATCATTGATCAATCTTGACTCCAGATCCTTTAAACCTCAAATTCAGGAACAGTTGATTACCAAATTCAACAACTTGCTTCTTGGAGCTATTTCAGACTCGAAGCTGCTGGAGTTTAGGCCAAGCGTGGTTGCCATATCTGCTCTAAGTTGCAGCCTAGACAAGTCAATTATTTCAAGTACAGCATCTGATACCTACCTAGCCTGTGCTACAAGTCTACTGGATAACAATCAAAAGGCTGAGTTGGTCAAGTGCCAGAAGCTCATGGAAGCACAAGCAGTAGCTGATGATTGCTTCTACAACTTACTAGCTCACAGGGTTTTCCATTTCTGCCCTTCAAGTCCCACAACTGTGTTGCTGAAGGAGCGGATTAACTTTTCTCATTATCATGTTGATTTCTCCCTCTTTAAGATGAGAGCTCAAAGAATGGACACTGCGGAATCAACAGCAAGGATCTGCCGGAAGAGAAAGAGGGAAGAAGAAGAAGAGTAA

Protein Analysis

315

Amino Acids

36.17

Weight (kDa)

5.2

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 70 - 140 5.1e-09 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 323
Acc36I ACCTGC 1 cut(s) 323
AccB7I CCANNNNNTGG 1 cut(s) 382
AccBSI CCGCTC 1 cut(s) 823
AccI GTMKAC 1 cut(s) 673
AciI CCGC 2 cut(s) 823, 893
AclWI GGATC 4 cut(s) 12, 351, 477, 917
AcsI RAATTY 3 cut(s) 336, 498, 521
AcuI CTGAAG 1 cut(s) 836
AfaI GTAC 2 cut(s) 443, 637
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 5 cut(s) 230, 335, 526, 633, 795
AleI CACNNNNGTG 1 cut(s) 806
AluBI AGCT 7 cut(s) 434, 545, 562, 718, 740, 767, 875
AluI AGCT 7 cut(s) 434, 545, 562, 718, 740, 767, 875
Alw21I GWGCWC 1 cut(s) 877
AlwI GGATC 4 cut(s) 12, 351, 477, 917
AlwNI CAGNNNCTG 3 cut(s) 346, 644, 740
AoxI GGCC 2 cut(s) 32, 575
ApeKI GCWGC 2 cut(s) 562, 609
ApoI RAATTY 3 cut(s) 336, 498, 521
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
AspLEI GCGC 1 cut(s) 417
BanII GRGCYC 1 cut(s) 877
Bbv12I GWGCWC 1 cut(s) 877
BbvI GCAGC 2 cut(s) 549, 621
BccI CCATC 3 cut(s) 253, 374, 405
BclI TGATCA 1 cut(s) 465
BfaI CTAG 6 cut(s) 213, 398, 446, 614, 656, 764
BfuAI ACCTGC 1 cut(s) 323
BisI GCNGC 2 cut(s) 563, 610
BlsI GCNGC 2 cut(s) 564, 611
BmsI GCATC 1 cut(s) 650
BpmI CTGGAG 2 cut(s) 463, 587
BsaAI YACGTR 1 cut(s) 178
BsaBI GATNNNNATC 1 cut(s) 684
BsaJI CCNNGG 1 cut(s) 245
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse1I ACTGG 1 cut(s) 681
Bse3DI GCAATG 3 cut(s) 207, 291, 417
Bse8I GATNNNNATC 1 cut(s) 684
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 3 cut(s) 115, 264, 416
BseJI GATNNNNATC 1 cut(s) 684
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMI GCAATG 3 cut(s) 207, 291, 417
BseMII CTCAG 1 cut(s) 687
BseNI ACTGG 1 cut(s) 681
BseXI GCAGC 2 cut(s) 549, 621
BshFI GGCC 2 cut(s) 34, 577
BsiHKAI GWGCWC 1 cut(s) 877
BsiSI CCGG 1 cut(s) 916
BslFI GGGAC 1 cut(s) 783
BslI CCNNNNNNNGG 1 cut(s) 382
BsmFI GGGAC 1 cut(s) 783
BsmI GAATGC 1 cut(s) 225
BsnI GGCC 2 cut(s) 34, 577
Bsp1286I GDGCHC 1 cut(s) 877
Bsp143I GATC 5 cut(s) 4, 343, 465, 482, 909
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 2 cut(s) 823, 893
BspANI GGCC 2 cut(s) 34, 577
BspCNI CTCAG 1 cut(s) 688
BspMI ACCTGC 1 cut(s) 323
BspPI GGATC 4 cut(s) 12, 351, 477, 917
BsrBI CCGCTC 1 cut(s) 823
BsrDI GCAATG 3 cut(s) 207, 291, 417
BsrI ACTGG 1 cut(s) 681
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 5 cut(s) 4, 343, 465, 482, 909
BssT1I CCWWGG 1 cut(s) 245
Bst4CI ACNGT 2 cut(s) 510, 808
Bst6I CTCTTC 2 cut(s) 914, 936
BstBAI YACGTR 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 2 cut(s) 602, 696
BstDSI CCRYGG 1 cut(s) 245
BstF5I GGATG 3 cut(s) 115, 264, 416
BstHHI GCGC 1 cut(s) 417
BstKTI GATC 5 cut(s) 7, 346, 468, 485, 912
BstMBI GATC 5 cut(s) 4, 343, 465, 482, 909
BstMWI GCNNNNNNNGC 2 cut(s) 596, 820
BstNSI RCATGY 1 cut(s) 163
BstSNI TACGTA 1 cut(s) 178
BstV1I GCAGC 2 cut(s) 549, 621
BstX2I RGATCY 3 cut(s) 343, 482, 909
BstYI RGATCY 3 cut(s) 343, 482, 909
BsuRI GGCC 2 cut(s) 34, 577
BtgI CCRYGG 1 cut(s) 245
BtgZI GCGATG 1 cut(s) 36
BtsCI GGATG 3 cut(s) 115, 264, 416
BtsI GCAGTG 1 cut(s) 888
BtsIMutI CAGTG 1 cut(s) 888
BveI ACCTGC 1 cut(s) 323
Cac8I GCNNGC 1 cut(s) 283
CaiI CAGNNNCTG 3 cut(s) 346, 644, 740
CfoI GCGC 1 cut(s) 417
Csp6I GTAC 2 cut(s) 442, 636
CviAII CATG 5 cut(s) 67, 160, 246, 721, 845
CviQI GTAC 2 cut(s) 442, 636
DdeI CTNAG 2 cut(s) 602, 696
DpnI GATC 5 cut(s) 6, 345, 467, 484, 911
DpnII GATC 5 cut(s) 4, 343, 465, 482, 909
DraI TTTAAA 2 cut(s) 220, 490
Eam1104I CTCTTC 2 cut(s) 914, 936
EarI CTCTTC 2 cut(s) 914, 936
Ecl136II GAGCTC 1 cut(s) 875
Eco105I TACGTA 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 877
Eco53kI GAGCTC 1 cut(s) 875
Eco57I CTGAAG 1 cut(s) 836
EcoICRI GAGCTC 1 cut(s) 875
EcoT14I CCWWGG 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 877
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 5 cut(s) 70, 163, 249, 724, 848
FaqI GGGAC 1 cut(s) 783
FatI CATG 5 cut(s) 66, 159, 245, 720, 844
FbaI TGATCA 1 cut(s) 465
FblI GTMKAC 1 cut(s) 673
Fnu4HI GCNGC 2 cut(s) 563, 610
FokI GGATG 3 cut(s) 122, 271, 423
FriOI GRGCYC 1 cut(s) 877
Fsp4HI GCNGC 2 cut(s) 563, 610
FspBI CTAG 6 cut(s) 213, 398, 446, 614, 656, 764
GlaI GCGC 1 cut(s) 416
GluI GCNGC 2 cut(s) 563, 610
GsuI CTGGAG 2 cut(s) 463, 587
HaeIII GGCC 2 cut(s) 34, 577
HapII CCGG 1 cut(s) 916
HhaI GCGC 1 cut(s) 417
Hin1II CATG 5 cut(s) 70, 163, 249, 724, 848
Hin6I GCGC 1 cut(s) 415
HinP1I GCGC 1 cut(s) 415
HinfI GANTC 5 cut(s) 122, 362, 476, 554, 896
HpaII CCGG 1 cut(s) 916
Hpy166II GTNNAC 1 cut(s) 674
Hpy188I TCNGA 2 cut(s) 553, 646
Hpy188III TCNNGA 5 cut(s) 341, 347, 473, 480, 503
Hpy8I GTNNAC 1 cut(s) 674
HpyAV CCTTC 4 cut(s) 45, 139, 801, 811
HpyCH4III ACNGT 2 cut(s) 510, 808
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 2 cut(s) 98, 609
HpyF10VI GCNNNNNNNGC 2 cut(s) 596, 820
HpyF3I CTNAG 2 cut(s) 602, 696
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 5 cut(s) 70, 163, 249, 724, 848
HspAI GCGC 1 cut(s) 415
Ksp22I TGATCA 1 cut(s) 465
Kzo9I GATC 5 cut(s) 4, 343, 465, 482, 909
LmnI GCTCC 2 cut(s) 542, 820
Lsp1109I GCAGC 2 cut(s) 549, 621
LweI GCATC 1 cut(s) 650
MaeI CTAG 6 cut(s) 213, 398, 446, 614, 656, 764
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 155
MalI GATC 5 cut(s) 6, 345, 467, 484, 911
MbiI CCGCTC 1 cut(s) 823
MboI GATC 5 cut(s) 4, 343, 465, 482, 909
MboII GAAGA 3 cut(s) 931, 944, 947
MflI RGATCY 3 cut(s) 343, 482, 909
MhlI GDGCHC 1 cut(s) 877
MluCI AATT 5 cut(s) 266, 336, 498, 521, 624
MlyI GAGTC 3 cut(s) 356, 470, 548
MmeI TCCRAC 1 cut(s) 400
MnlI CCTC 6 cut(s) 19, 307, 394, 504, 869, 921
MseI TTAA 5 cut(s) 219, 306, 489, 828, 864
MslI CAYNNNNRTG 3 cut(s) 409, 806, 843
MspI CCGG 1 cut(s) 916
Mva1269I GAATGC 1 cut(s) 225
MwoI GCNNNNNNNGC 2 cut(s) 596, 820
NcoI CCATGG 1 cut(s) 245
NdeII GATC 5 cut(s) 4, 343, 465, 482, 909
NlaIII CATG 5 cut(s) 70, 163, 249, 724, 848
NspI RCATGY 1 cut(s) 163
OliI CACNNNNGTG 1 cut(s) 806
PaqCI CACCTGC 1 cut(s) 323
PctI GAATGC 1 cut(s) 225
PfeI GAWTC 2 cut(s) 122, 896
PflMI CCANNNNNTGG 1 cut(s) 382
PkrI GCNGC 2 cut(s) 564, 611
PleI GAGTC 3 cut(s) 356, 470, 548
PpsI GAGTC 3 cut(s) 356, 470, 548
Ppu21I YACGTR 1 cut(s) 178
Psp124BI GAGCTC 1 cut(s) 877
PstNI CAGNNNCTG 3 cut(s) 346, 644, 740
PsuI RGATCY 3 cut(s) 343, 482, 909
RsaI GTAC 2 cut(s) 443, 637
RsaNI GTAC 2 cut(s) 442, 636
RseI CAYNNNNRTG 3 cut(s) 409, 806, 843
SacI GAGCTC 1 cut(s) 877
SaqAI TTAA 5 cut(s) 219, 306, 489, 828, 864
SatI GCNGC 2 cut(s) 563, 610
Sau3AI GATC 5 cut(s) 4, 343, 465, 482, 909
SchI GAGTC 3 cut(s) 356, 470, 548
SduI GDGCHC 1 cut(s) 877
SfaNI GCATC 1 cut(s) 650
SmiMI CAYNNNNRTG 3 cut(s) 409, 806, 843
SnaBI TACGTA 1 cut(s) 178
Sse9I AATT 5 cut(s) 266, 336, 498, 521, 624
SsiI CCGC 2 cut(s) 823, 893
SspI AATATT 1 cut(s) 254
SspMI CTAG 6 cut(s) 213, 398, 446, 614, 656, 764
SstI GAGCTC 1 cut(s) 877
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 2 cut(s) 510, 808
TaiI ACGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 557
TasI AATT 5 cut(s) 266, 336, 498, 521, 624
TatI WGTACW 1 cut(s) 635
TfiI GAWTC 2 cut(s) 122, 896
Tru1I TTAA 5 cut(s) 219, 306, 489, 828, 864
Tru9I TTAA 5 cut(s) 219, 306, 489, 828, 864
TscAI CASTG 1 cut(s) 895
TseI GCWGC 2 cut(s) 562, 609
TspDTI ATGAA 2 cut(s) 74, 135
TspRI CASTG 1 cut(s) 895
Van91I CCANNNNNTGG 1 cut(s) 382
XapI RAATTY 3 cut(s) 336, 498, 521
XceI RCATGY 1 cut(s) 163
XcmI CCANNNNNNNNNTGG 1 cut(s) 252
XmiI GTMKAC 1 cut(s) 673
XspI CTAG 6 cut(s) 213, 398, 446, 614, 656, 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.