Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0010288

Physical Location & Seq

Genomic Coordinates Reverse (-)

16462537 .. 16464490

Gene Structure 1954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g14010.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGTTTGCATGAAAAGTTTGCTTTGTGATGAGGTATGCCCTCCAAGCCCCCCTGCAGTGACTACTGAGCCTTTCGGTTGCAGTAACTTTGGATCCTCAATGTATACAACTAAGGAAGAGTATGACCAGGCTCTTACCATATGCATGGAGAAGGAGATCAGCTACATGCCTGAACCTAATTATCTAGAGAACCTATCTTCCAATTATTTGGTCATTGCTAGGTTAAAATGCATTCAGTGGTTCATCAAGGGATGGAAATATTGGATGGTTGAATTGGTGTCTGTTGCCTGCTTATCTATTGCCTCCAAGTTCAGTGATACCTGCAATCCTTCCCTGCTTGAACTTCAGATGGAAGATCTGGACCATTCATTTGAGCCAAGCACAATCCAACGAATGGAAATGATGGTGCTAAATGCATTAGGATGGCGCCTTGCGTCTACAACAGCTTACTCTTACCTAGAACTGTTGGAATGGATTCTGGACTCCTTGAAGCCCCAACTTCATGAAAAGCTCATGGGCCGACTTAACAAATTGCTTCTTGGAGCTATTTCAGATTCCAAGCTTCTGGATTTTAGGCCAAGTGTGGTTGCAATATCTGCTCTAAGGTGCAGTCTGGATAAGATTCAACTTTCAGAAGCCATATCTGATAACGCCTACCTCACGTGTCTCACAAGTCTATTGGATCATGACCAAAAGTGTGAGTTGGTGAAGTGCCATATGATGATGGAGGAGCAATATTCATCGGTTGATTTTTTGGACAACTTAAGAGTTCAACGGGATATTCATTACTGCCCTTCAAGTCCCACAACAGTGCTGTTGAAGAATCGTATTATTTTTTATGATTTTCATGTTGATTTCTCTCTCTTTAAGATGAGAGATCAAACTATAATCACCGGGATTAACAAGAGAAAGCGAGAAGATGACTACCCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051726 GO:0061458 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

312

Amino Acids

35.84

Weight (kDa)

5.08

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02110 AT5G02110
fragaria_vesca	FvH4_6g13230
malus_domestica	MD04G1133300.v1.1 MD12G1146100.v1.1
prunus_persica	Prupe.6G259300_v2.0.a1
pyrus_communis	pycom12g14010
rosa_chinensis	RchiOBHm_Chr3g0466061
rosa_laevigata	RLG00000024606
rosa_multiflora	Rmu_sc0005135.1_g000003 Rmu_sc0007597.1_g000002 Rmu_sc0007597.1_g000004 Rmu_sc0029260.1_g000002
rosa_roxburghii	Rroxscaffold_6G00414830
rosa_rugosa	Rorug03G0079200
rosa_samantha	Rh3BG146400 Rh3BG146500 Rh3CG147300 Rh3DG147300 Rh3DG147400
rosa_wichuraiana	Rw3G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	426
AccB7I	CCANNNNNTGG	1 cut(s)	394
AccI	GTMKAC	2 cut(s)	104, 437
AclWI	GGATC	3 cut(s)	87, 100, 690
AcuI	CTGAAG	1 cut(s)	329
AcvI	CACGTG	1 cut(s)	663
AcyI	GRCGYC	1 cut(s)	427
AfiI	CCNNNNNNNGG	1 cut(s)	394
AflII	CTTAAG	1 cut(s)	763
AflIII	ACRYGT	1 cut(s)	662
AgsI	TTSAA	7 cut(s)	272, 341, 490, 626, 773, 798, 820
AjnI	CCWGG	1 cut(s)	126
AleI	CACNNNNGTG	1 cut(s)	809
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	5 cut(s)	162, 446, 511, 545, 562
AluI	AGCT	5 cut(s)	162, 446, 511, 545, 562
Alw26I	GTCTC	1 cut(s)	671
AlwI	GGATC	3 cut(s)	87, 100, 690
AoxI	GGCC	2 cut(s)	517, 575
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
Asp700I	GAANNNNTTC	1 cut(s)	474
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	2 cut(s)	361, 517
AsuC2I	CCSGG	1 cut(s)	895
AsuHPI	GGTGA	2 cut(s)	718, 883
AvaII	GGWCC	1 cut(s)	361
BamHI	GGATCC	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	426
BbrPI	CACGTG	1 cut(s)	663
BccI	CCATC	6 cut(s)	246, 259, 343, 397, 417, 718
BciT130I	CCWGG	1 cut(s)	128
BcnI	CCSGG	1 cut(s)	895
BcoDI	GTCTC	1 cut(s)	671
BfaI	CTAG	3 cut(s)	185, 219, 458
BfmI	CTRYAG	1 cut(s)	54
BfoI	RGCGCY	1 cut(s)	430
BfrI	CTTAAG	1 cut(s)	763
BfuAI	ACCTGC	1 cut(s)	329
BglII	AGATCT	1 cut(s)	355
Bme1390I	CCNGG	2 cut(s)	128, 895
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	2 cut(s)	361, 517
BmiI	GGNNCC	2 cut(s)	94, 428
BmrFI	CCNGG	2 cut(s)	128, 895
BpuMI	CCSGG	1 cut(s)	895
BsaAI	YACGTR	1 cut(s)	663
BsaHI	GRCGYC	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse3DI	GCAATG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	128
BseGI	GGATG	3 cut(s)	257, 270, 428
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	743
BsgI	GTGCAG	1 cut(s)	628
BshFI	GGCC	2 cut(s)	519, 577
BshNI	GGYRCC	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	894
BslFI	GGGAC	1 cut(s)	786
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmAI	GTCTC	1 cut(s)	671
BsmFI	GGGAC	1 cut(s)	786
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	519, 577
Bsp143I	GATC	5 cut(s)	92, 156, 355, 682, 877
BspANI	GGCC	2 cut(s)	519, 577
BspCNI	CTCAG	1 cut(s)	58
BspHI	TCATGA	2 cut(s)	502, 685
BspLI	GGNNCC	2 cut(s)	94, 428
BspMAI	CTGCAG	1 cut(s)	58
BspMI	ACCTGC	1 cut(s)	329
BspPI	GGATC	3 cut(s)	87, 100, 690
BspT107I	GGYRCC	1 cut(s)	426
BspTI	CTTAAG	1 cut(s)	763
BsrDI	GCAATG	1 cut(s)	213
BssMI	GATC	5 cut(s)	92, 156, 355, 682, 877
BssNAI	GTATAC	1 cut(s)	105
BssNI	GRCGYC	1 cut(s)	427
Bst1107I	GTATAC	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	2 cut(s)	465, 811
Bst6I	CTCTTC	1 cut(s)	111
BstACI	GRCGYC	1 cut(s)	427
BstAFI	CTTAAG	1 cut(s)	763
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstBAI	YACGTR	1 cut(s)	663
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	3 cut(s)	66, 111, 602
BstF5I	GGATG	3 cut(s)	257, 270, 428
BstH2I	RGCGCY	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	5 cut(s)	95, 159, 358, 685, 880
BstMAI	GTCTC	1 cut(s)	671
BstMBI	GATC	5 cut(s)	92, 156, 355, 682, 877
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 596
BstNI	CCWGG	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	2 cut(s)	126, 893
BstSFI	CTRYAG	1 cut(s)	54
BstX2I	RGATCY	2 cut(s)	92, 355
BstXI	CCANNNNNNTGG	3 cut(s)	145, 208, 565
BstYI	RGATCY	2 cut(s)	92, 355
BstZ17I	GTATAC	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	519, 577
BtsCI	GGATG	3 cut(s)	257, 270, 428
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	4 cut(s)	63, 242, 319, 816
BveI	ACCTGC	1 cut(s)	329
Cac8I	GCNNGC	1 cut(s)	289
CciI	TCATGA	2 cut(s)	502, 685
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	2 cut(s)	361, 517
CseI	GACGC	1 cut(s)	423
CviAII	CATG	7 cut(s)	10, 145, 166, 503, 514, 686, 848
DdeI	CTNAG	3 cut(s)	66, 111, 602
DinI	GGCGCC	1 cut(s)	428
DpnI	GATC	5 cut(s)	94, 158, 357, 684, 879
DpnII	GATC	5 cut(s)	92, 156, 355, 682, 877
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	329
Eco72I	CACGTG	1 cut(s)	663
EcoRII	CCWGG	1 cut(s)	126
EcoT22I	ATGCAT	3 cut(s)	146, 233, 418
EgeI	GGCGCC	1 cut(s)	428
EheI	GGCGCC	1 cut(s)	428
FaeI	CATG	7 cut(s)	13, 148, 169, 506, 517, 689, 851
FaqI	GGGAC	1 cut(s)	786
FatI	CATG	7 cut(s)	9, 144, 165, 502, 513, 685, 847
FauNDI	CATATG	2 cut(s)	140, 717
FblI	GTMKAC	2 cut(s)	104, 437
FokI	GGATG	3 cut(s)	264, 277, 435
FspBI	CTAG	3 cut(s)	185, 219, 458
GlaI	GCGC	1 cut(s)	428
HaeII	RGCGCY	1 cut(s)	430
HaeIII	GGCC	2 cut(s)	519, 577
HapII	CCGG	1 cut(s)	894
HgaI	GACGC	1 cut(s)	423
HhaI	GCGC	1 cut(s)	429
Hin1I	GRCGYC	1 cut(s)	427
Hin1II	CATG	7 cut(s)	13, 148, 169, 506, 517, 689, 851
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	560
HinfI	GANTC	5 cut(s)	475, 482, 554, 622, 823
HpaII	CCGG	1 cut(s)	894
HphI	GGTGA	2 cut(s)	718, 883
Hpy166II	GTNNAC	2 cut(s)	105, 438
Hpy188I	TCNGA	4 cut(s)	348, 553, 634, 646
Hpy188III	TCNNGA	7 cut(s)	185, 359, 479, 503, 566, 614, 686
Hpy8I	GTNNAC	2 cut(s)	105, 438
HpyAV	CCTTC	3 cut(s)	145, 339, 804
HpyCH4III	ACNGT	2 cut(s)	465, 811
HpyCH4IV	ACGT	1 cut(s)	662
HpyCH4V	TGCA	9 cut(s)	9, 56, 81, 144, 231, 324, 416, 590, 609
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 596
HpyF3I	CTNAG	3 cut(s)	66, 111, 602
HpySE526I	ACGT	1 cut(s)	662
Hsp92I	GRCGYC	1 cut(s)	427
Hsp92II	CATG	7 cut(s)	13, 148, 169, 506, 517, 689, 851
HspAI	GCGC	1 cut(s)	427
KasI	GGCGCC	1 cut(s)	426
Kzo9I	GATC	5 cut(s)	92, 156, 355, 682, 877
LmnI	GCTCC	2 cut(s)	542, 730
MaeI	CTAG	3 cut(s)	185, 219, 458
MaeII	ACGT	1 cut(s)	662
MaeIII	GTNAC	2 cut(s)	58, 83
MalI	GATC	5 cut(s)	94, 158, 357, 684, 879
MboI	GATC	5 cut(s)	92, 156, 355, 682, 877
MboII	GAAGA	5 cut(s)	128, 189, 365, 832, 929
MflI	RGATCY	2 cut(s)	92, 355
MluCI	AATT	5 cut(s)	178, 202, 272, 530, 931
Mly113I	GGCGCC	1 cut(s)	427
MlyI	GAGTC	1 cut(s)	476
MmeI	TCCRAC	2 cut(s)	412, 447
MnlI	CCTC	6 cut(s)	25, 51, 106, 313, 668, 721
Mph1103I	ATGCAT	3 cut(s)	146, 233, 418
MroXI	GAANNNNTTC	1 cut(s)	474
MseI	TTAA	5 cut(s)	224, 525, 764, 867, 900
MslI	CAYNNNNRTG	3 cut(s)	143, 421, 809
MspCI	CTTAAG	1 cut(s)	763
MspI	CCGG	1 cut(s)	894
MspR9I	CCNGG	2 cut(s)	128, 895
Mva1269I	GAATGC	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	45, 596
NarI	GGCGCC	1 cut(s)	427
NciI	CCSGG	1 cut(s)	895
NdeI	CATATG	2 cut(s)	140, 717
NdeII	GATC	5 cut(s)	92, 156, 355, 682, 877
NlaIII	CATG	7 cut(s)	13, 148, 169, 506, 517, 689, 851
NlaIV	GGNNCC	2 cut(s)	94, 428
NmuCI	GTSAC	1 cut(s)	58
NsiI	ATGCAT	3 cut(s)	146, 233, 418
NspI	RCATGY	1 cut(s)	169
OliI	CACNNNNGTG	1 cut(s)	809
PagI	TCATGA	2 cut(s)	502, 685
PctI	GAATGC	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	474
PfeI	GAWTC	4 cut(s)	475, 554, 622, 823
PflMI	CCANNNNNTGG	1 cut(s)	394
PleI	GAGTC	1 cut(s)	476
PluTI	GGCGCC	1 cut(s)	430
PmaCI	CACGTG	1 cut(s)	663
PmlI	CACGTG	1 cut(s)	663
PpsI	GAGTC	1 cut(s)	476
Ppu21I	YACGTR	1 cut(s)	663
Psp6I	CCWGG	1 cut(s)	126
PspCI	CACGTG	1 cut(s)	663
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	94, 428
PspPI	GGNCC	2 cut(s)	361, 517
PstI	CTGCAG	1 cut(s)	58
PsuI	RGATCY	2 cut(s)	92, 355
RseI	CAYNNNNRTG	3 cut(s)	143, 421, 809
SaqAI	TTAA	5 cut(s)	224, 525, 764, 867, 900
Sau3AI	GATC	5 cut(s)	92, 156, 355, 682, 877
Sau96I	GGNCC	2 cut(s)	361, 517
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	2 cut(s)	128, 895
SfcI	CTRYAG	1 cut(s)	54
SfoI	GGCGCC	1 cut(s)	428
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	3 cut(s)	143, 421, 809
SmlI	CTYRAG	1 cut(s)	763
SmoI	CTYRAG	1 cut(s)	763
Sse9I	AATT	5 cut(s)	178, 202, 272, 530, 931
SspDI	GGCGCC	1 cut(s)	426
SspI	AATATT	2 cut(s)	260, 737
SspMI	CTAG	3 cut(s)	185, 219, 458
StyD4I	CCNGG	2 cut(s)	126, 893
TaaI	ACNGT	2 cut(s)	465, 811
TaiI	ACGT	1 cut(s)	665
TasI	AATT	5 cut(s)	178, 202, 272, 530, 931
TfiI	GAWTC	4 cut(s)	475, 554, 622, 823
Tru1I	TTAA	5 cut(s)	224, 525, 764, 867, 900
Tru9I	TTAA	5 cut(s)	224, 525, 764, 867, 900
TscAI	CASTG	4 cut(s)	63, 242, 319, 816
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	8 cut(s)	26, 232, 357, 491, 519, 729, 773, 836
TspRI	CASTG	4 cut(s)	63, 242, 319, 816
Van91I	CCANNNNNTGG	1 cut(s)	394
Vha464I	CTTAAG	1 cut(s)	763
VpaK11BI	GGWCC	1 cut(s)	361
XbaI	TCTAGA	1 cut(s)	184
XceI	RCATGY	1 cut(s)	169
XmiI	GTMKAC	2 cut(s)	104, 437
XmnI	GAANNNNTTC	1 cut(s)	474
XspI	CTAG	3 cut(s)	185, 219, 458
Zsp2I	ATGCAT	3 cut(s)	146, 233, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.