Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010288

Physical Location & Seq

Genomic Coordinates Reverse (-)

25050112 .. 25051762

Gene Structure 1651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G259300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAAAGCTTGCTTTGTGATGAGGTGTGGCCTTCAAGTCCTGCTGTGAATGATCCTATGAGTCAAATGGATCATTGTGGATCAAACAGTTACTGTGGATCATCAATGTACACAACTAAGGAAGACTTTAAGCAGGCTCTTGCCATATGCTTGGGGAAGGAGATGAGTTACATGCCTGGACCCAACTATGCAGAGAAATTGTGTTCAAATAGTTTGATCATTGCTAGGTTTAAAAGCATTCACTGGTTTATCAAGTGTAGAAGTCGGTTGAACCTCTCCCTTGGAACTGTTTTCTATGCTGCAAATTACCTTGATCGATTCATATCTACGAACCATTGTAATGGATGGGAATATTGGATGGTGGACTTGTTGTCTGTTGCCTGTTTATCCATTGCCACCAAATTCAACGACACCTGCACTCCGACGCTGCTCGAAATTCAGATGGAAGATCTTGACCATTTATTTGAGCCAAGCACAATCCAACGAATGGAAATGATGCTGCTAAAGGCATTAGGATGGCGCCTTGCTTCTACAACATCTTATTCTTACCTAGAATTGTTGATACAGATCATGGACTCTTTGAAACCTCAACTTCATCAAGAGTTCATTGCCCGAGTCAACAAGTTGCTTCTTGGAGCTATTTCAGATTTGAAGCTGCTGGGTTTTAGGCCAAGTGTGATTACCATGTCTGCCCTAAGGTGCAGTCTGGACAAGTTACAAACTTCAACAGCAACATCTGATGCCTGCCTCACTGATCTTACAAGTCTCTTGGATCATGATCGAAAGGCTGAGTTGGTGAAATGCCATAAGATCATGGAAGAGCAATCGGTTGATGGCTTGGACAACTTAATAGGTCACGAGATTTTCCATTTCTGCCCTTCAAGTCCCACAACAGTGTTGTTGAAGGAGCGTATTAACTCTTATGATAACCATGTTGATTTCTCTCTCTTTAATATGAGAGGCCGAAACATGATCAATGCGGAACCAGGGAGGAGGATCAACAAGAGAAAGAGAGAAGAAGATGATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051726 GO:0061458 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

344

Amino Acids

39.12

Weight (kDa)

5.82

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02110 AT5G02110
fragaria_vesca	FvH4_6g13230
malus_domestica	MD04G1133300.v1.1 MD12G1146100.v1.1
prunus_persica	Prupe.6G259300_v2.0.a1
pyrus_communis	pycom12g14010
rosa_chinensis	RchiOBHm_Chr3g0466061
rosa_laevigata	RLG00000024606
rosa_multiflora	Rmu_sc0005135.1_g000003 Rmu_sc0007597.1_g000002 Rmu_sc0007597.1_g000004 Rmu_sc0029260.1_g000002
rosa_roxburghii	Rroxscaffold_6G00414830
rosa_rugosa	Rorug03G0079200
rosa_samantha	Rh3BG146400 Rh3BG146500 Rh3CG147300 Rh3DG147300 Rh3DG147400
rosa_wichuraiana	Rw3G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	422
Acc36I	ACCTGC	1 cut(s)	422
AccB1I	GGYRCC	1 cut(s)	519
AccB7I	CCANNNNNTGG	1 cut(s)	487
AciI	CCGC	1 cut(s)	980
AclWI	GGATC	6 cut(s)	47, 78, 88, 106, 780, 1004
AcsI	RAATTY	2 cut(s)	401, 435
AcyI	GRCGYC	1 cut(s)	520
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	487
AgsI	TTSAA	9 cut(s)	36, 207, 271, 406, 583, 652, 726, 882, 904
AhdI	GACNNNNNGTC	1 cut(s)	370
AjnI	CCWGG	2 cut(s)	175, 985
AleI	CACNNNNGTG	1 cut(s)	893
AluBI	AGCT	3 cut(s)	9, 638, 655
AluI	AGCT	3 cut(s)	9, 638, 655
Alw26I	GTCTC	1 cut(s)	770
AlwI	GGATC	6 cut(s)	47, 78, 88, 106, 780, 1004
AlwNI	CAGNNNCTG	1 cut(s)	93
Ama87I	CYCGRG	1 cut(s)	612
AoxI	GGCC	3 cut(s)	29, 668, 961
ApeKI	GCWGC	4 cut(s)	299, 427, 499, 655
ApoI	RAATTY	2 cut(s)	401, 435
ArsI	GACNNNNNNTTYG	2 cut(s)	446, 478
AspLEI	GCGC	1 cut(s)	522
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	808
AvaI	CYCGRG	1 cut(s)	612
AvaII	GGWCC	1 cut(s)	179
AxyI	CCTNAGG	1 cut(s)	695
BanI	GGYRCC	1 cut(s)	519
BauI	CACGAG	1 cut(s)	857
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	4 cut(s)	286, 414, 486, 642
BccI	CCATC	5 cut(s)	339, 352, 436, 510, 827
BciT130I	CCWGG	2 cut(s)	177, 987
BclI	TGATCA	3 cut(s)	216, 972, 1024
BcoDI	GTCTC	1 cut(s)	770
BfaI	CTAG	2 cut(s)	225, 551
BfoI	RGCGCY	1 cut(s)	523
BfuAI	ACCTGC	1 cut(s)	422
BglII	AGATCT	1 cut(s)	448
BisI	GCNGC	4 cut(s)	300, 428, 500, 656
BlsI	GCNGC	4 cut(s)	301, 429, 501, 657
Bme1390I	CCNGG	2 cut(s)	177, 987
Bme18I	GGWCC	1 cut(s)	179
BmeRI	GACNNNNNGTC	1 cut(s)	370
BmeT110I	CYCGRG	1 cut(s)	612
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	3 cut(s)	181, 521, 984
BmrFI	CCNGG	2 cut(s)	177, 987
BmsI	GCATC	2 cut(s)	486, 730
BpiI	GAAGAC	1 cut(s)	129
Bsa29I	ATCGAT	1 cut(s)	316
BsaBI	GATNNNNATC	3 cut(s)	322, 566, 777
BsaHI	GRCGYC	1 cut(s)	520
BsaJI	CCNNGG	2 cut(s)	280, 986
BsaXI	ACNNNNNCTCC	2 cut(s)	403, 433
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	248
Bse21I	CCTNAGG	1 cut(s)	695
Bse3DI	GCAATG	3 cut(s)	219, 390, 606
Bse8I	GATNNNNATC	3 cut(s)	322, 566, 777
BseBI	CCWGG	2 cut(s)	177, 987
BseCI	ATCGAT	1 cut(s)	316
BseDI	CCNNGG	2 cut(s)	280, 986
BseGI	GGATG	3 cut(s)	350, 363, 521
BseJI	GATNNNNATC	3 cut(s)	322, 566, 777
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMI	GCAATG	3 cut(s)	219, 390, 606
BseMII	CTCAG	1 cut(s)	780
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	1006
BseXI	GCAGC	4 cut(s)	286, 414, 486, 642
BseYI	CCCAGC	1 cut(s)	658
BsgI	GTGCAG	2 cut(s)	400, 721
BshFI	GGCC	3 cut(s)	31, 670, 963
BshNI	GGYRCC	1 cut(s)	519
BshVI	ATCGAT	1 cut(s)	316
BsiHKCI	CYCGRG	1 cut(s)	612
BslFI	GGGAC	1 cut(s)	870
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	1 cut(s)	770
BsmFI	GGGAC	1 cut(s)	870
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	3 cut(s)	31, 670, 963
BsoBI	CYCGRG	1 cut(s)	612
Bsp1407I	TGTACA	1 cut(s)	108
BspACI	CCGC	1 cut(s)	980
BspANI	GGCC	3 cut(s)	31, 670, 963
BspCNI	CTCAG	1 cut(s)	781
BspDI	ATCGAT	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	775
BspLI	GGNNCC	3 cut(s)	181, 521, 984
BspMI	ACCTGC	1 cut(s)	422
BspPI	GGATC	6 cut(s)	47, 78, 88, 106, 780, 1004
BspQI	GCTCTTC	1 cut(s)	813
BspT107I	GGYRCC	1 cut(s)	519
BsrDI	GCAATG	3 cut(s)	219, 390, 606
BsrGI	TGTACA	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	280, 986
BssNI	GRCGYC	1 cut(s)	520
BssSI	CACGAG	1 cut(s)	857
BssT1I	CCWWGG	1 cut(s)	280
Bst2BI	CACGAG	1 cut(s)	857
Bst2UI	CCWGG	2 cut(s)	177, 987
Bst4CI	ACNGT	4 cut(s)	89, 95, 289, 895
Bst6I	CTCTTC	1 cut(s)	813
BstACI	GRCGYC	1 cut(s)	520
BstAUI	TGTACA	1 cut(s)	108
BstC8I	GCNNGC	3 cut(s)	11, 135, 745
BstDEI	CTNAG	3 cut(s)	117, 695, 789
BstF5I	GGATG	3 cut(s)	350, 363, 521
BstH2I	RGCGCY	1 cut(s)	523
BstHHI	GCGC	1 cut(s)	522
BstMAI	GTCTC	1 cut(s)	770
BstNI	CCWGG	2 cut(s)	177, 987
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	2 cut(s)	175, 985
BstV1I	GCAGC	4 cut(s)	286, 414, 486, 642
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	448
BstXI	CCANNNNNNTGG	2 cut(s)	151, 341
BstYI	RGATCY	1 cut(s)	448
Bsu15I	ATCGAT	1 cut(s)	316
Bsu36I	CCTNAGG	1 cut(s)	695
BsuRI	GGCC	3 cut(s)	31, 670, 963
BsuTUI	ATCGAT	1 cut(s)	316
BtsCI	GGATG	3 cut(s)	350, 363, 521
BtsIMutI	CAGTG	3 cut(s)	241, 750, 900
BveI	ACCTGC	1 cut(s)	422
Cac8I	GCNNGC	3 cut(s)	11, 135, 745
CaiI	CAGNNNCTG	1 cut(s)	93
CciI	TCATGA	1 cut(s)	775
CfoI	GCGC	1 cut(s)	522
Cfr13I	GGNCC	1 cut(s)	179
ClaI	ATCGAT	1 cut(s)	316
CseI	GACGC	1 cut(s)	433
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	7 cut(s)	172, 571, 685, 776, 814, 932, 970
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	3 cut(s)	117, 695, 789
DinI	GGCGCC	1 cut(s)	521
DraI	TTTAAA	1 cut(s)	232
DriI	GACNNNNNGTC	1 cut(s)	370
Eam1104I	CTCTTC	1 cut(s)	813
Eam1105I	GACNNNNNGTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	813
Eco130I	CCWWGG	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	179
Eco81I	CCTNAGG	1 cut(s)	695
Eco88I	CYCGRG	1 cut(s)	612
EcoRII	CCWGG	2 cut(s)	175, 985
EcoT14I	CCWWGG	1 cut(s)	280
EgeI	GGCGCC	1 cut(s)	521
EheI	GGCGCC	1 cut(s)	521
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	7 cut(s)	175, 574, 688, 779, 817, 935, 973
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FaqI	GGGAC	1 cut(s)	870
FatI	CATG	7 cut(s)	171, 570, 684, 775, 813, 931, 969
FauNDI	CATATG	1 cut(s)	146
FbaI	TGATCA	3 cut(s)	216, 972, 1024
Fnu4HI	GCNGC	4 cut(s)	300, 428, 500, 656
FokI	GGATG	3 cut(s)	357, 370, 528
Fsp4HI	GCNGC	4 cut(s)	300, 428, 500, 656
FspBI	CTAG	2 cut(s)	225, 551
GlaI	GCGC	1 cut(s)	521
GluI	GCNGC	4 cut(s)	300, 428, 500, 656
GsaI	CCCAGC	1 cut(s)	662
HaeII	RGCGCY	1 cut(s)	523
HaeIII	GGCC	3 cut(s)	31, 670, 963
HgaI	GACGC	1 cut(s)	433
HhaI	GCGC	1 cut(s)	522
Hin1I	GRCGYC	1 cut(s)	520
Hin1II	CATG	7 cut(s)	175, 574, 688, 779, 817, 935, 973
Hin6I	GCGC	1 cut(s)	520
HinP1I	GCGC	1 cut(s)	520
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	4 cut(s)	61, 318, 575, 615
HphI	GGTGA	1 cut(s)	808
Hpy166II	GTNNAC	3 cut(s)	111, 364, 619
Hpy188I	TCNGA	4 cut(s)	423, 441, 646, 739
Hpy188III	TCNNGA	5 cut(s)	452, 599, 707, 776, 857
Hpy8I	GTNNAC	3 cut(s)	111, 364, 619
Hpy99I	CGWCG	1 cut(s)	427
HpyAV	CCTTC	4 cut(s)	42, 151, 888, 898
HpyCH4III	ACNGT	4 cut(s)	89, 95, 289, 895
HpyCH4V	TGCA	4 cut(s)	191, 302, 417, 702
HpyF3I	CTNAG	3 cut(s)	117, 695, 789
Hsp92I	GRCGYC	1 cut(s)	520
Hsp92II	CATG	7 cut(s)	175, 574, 688, 779, 817, 935, 973
HspAI	GCGC	1 cut(s)	520
KasI	GGCGCC	1 cut(s)	519
Ksp22I	TGATCA	3 cut(s)	216, 972, 1024
LguI	GCTCTTC	1 cut(s)	813
LmnI	GCTCC	2 cut(s)	635, 907
Lsp1109I	GCAGC	4 cut(s)	286, 414, 486, 642
LweI	GCATC	2 cut(s)	486, 730
MaeI	CTAG	2 cut(s)	225, 551
MaeIII	GTNAC	4 cut(s)	89, 167, 714, 854
MboII	GAAGA	5 cut(s)	134, 458, 830, 1028, 1031
MflI	RGATCY	1 cut(s)	448
MluCI	AATT	5 cut(s)	197, 304, 401, 435, 554
Mly113I	GGCGCC	1 cut(s)	520
MlyI	GAGTC	3 cut(s)	70, 569, 624
MmeI	TCCRAC	2 cut(s)	446, 505
MnlI	CCTC	7 cut(s)	16, 284, 597, 758, 953, 984, 987
MseI	TTAA	5 cut(s)	129, 231, 848, 915, 951
MslI	CAYNNNNRTG	3 cut(s)	339, 514, 893
MspR9I	CCNGG	2 cut(s)	177, 987
Mva1269I	GAATGC	1 cut(s)	237
MvaI	CCWGG	2 cut(s)	177, 987
NarI	GGCGCC	1 cut(s)	520
NdeI	CATATG	1 cut(s)	146
NlaIII	CATG	7 cut(s)	175, 574, 688, 779, 817, 935, 973
NlaIV	GGNNCC	3 cut(s)	181, 521, 984
NmuCI	GTSAC	1 cut(s)	854
NspI	RCATGY	1 cut(s)	175
OliI	CACNNNNGTG	1 cut(s)	893
PagI	TCATGA	1 cut(s)	775
PaqCI	CACCTGC	1 cut(s)	422
PciSI	GCTCTTC	1 cut(s)	813
PctI	GAATGC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	318
PflMI	CCANNNNNTGG	1 cut(s)	487
PkrI	GCNGC	4 cut(s)	301, 429, 501, 657
PleI	GAGTC	3 cut(s)	69, 569, 623
PluTI	GGCGCC	1 cut(s)	523
PpsI	GAGTC	3 cut(s)	69, 569, 623
Psp6I	CCWGG	2 cut(s)	175, 985
PspFI	CCCAGC	1 cut(s)	658
PspGI	CCWGG	2 cut(s)	175, 985
PspN4I	GGNNCC	3 cut(s)	181, 521, 984
PspPI	GGNCC	1 cut(s)	179
PstNI	CAGNNNCTG	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	448
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
RseI	CAYNNNNRTG	3 cut(s)	339, 514, 893
SapI	GCTCTTC	1 cut(s)	813
SaqAI	TTAA	5 cut(s)	129, 231, 848, 915, 951
SatI	GCNGC	4 cut(s)	300, 428, 500, 656
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	3 cut(s)	70, 569, 624
ScrFI	CCNGG	2 cut(s)	177, 987
SfaNI	GCATC	2 cut(s)	486, 730
SfoI	GGCGCC	1 cut(s)	521
SinI	GGWCC	1 cut(s)	179
SmiMI	CAYNNNNRTG	3 cut(s)	339, 514, 893
Sse9I	AATT	5 cut(s)	197, 304, 401, 435, 554
SsiI	CCGC	1 cut(s)	980
SspDI	GGCGCC	1 cut(s)	519
SspI	AATATT	1 cut(s)	353
SspMI	CTAG	2 cut(s)	225, 551
StyD4I	CCNGG	2 cut(s)	175, 985
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	4 cut(s)	89, 95, 289, 895
TaqI	TCGA	3 cut(s)	316, 432, 781
TasI	AATT	5 cut(s)	197, 304, 401, 435, 554
TatI	WGTACW	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	5 cut(s)	129, 231, 848, 915, 951
Tru9I	TTAA	5 cut(s)	129, 231, 848, 915, 951
TscAI	CASTG	3 cut(s)	248, 757, 900
TseFI	GTSAC	1 cut(s)	854
TseI	GCWGC	4 cut(s)	299, 427, 499, 655
Tsp45I	GTSAC	1 cut(s)	854
TspDTI	ATGAA	3 cut(s)	310, 584, 595
TspRI	CASTG	3 cut(s)	248, 757, 900
Van91I	CCANNNNNTGG	1 cut(s)	487
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	2 cut(s)	401, 435
XceI	RCATGY	1 cut(s)	175
XspI	CTAG	2 cut(s)	225, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.