FvH4_6g13230

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010288
Physical Location & Seq
Forward (+)
8055744 .. 8057918
2175 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13230.t1

Sequence Viewer

Length: 1023 bp
ATGGATCAAAGTTTGCTCTGCGATGAGGTGTGGCCTTCCAGCCCTTTGGCGACTGCTAAGAACTACATGATTGATTGTGAAACATTATCAATGTATGCAAGAAGTAAGCGAGACTATGATGAATCTTTTACCATATGCTTGGAGAAGGAGATGAGTTACATGCCCCAACCGAACTACGTAGAGAATCTCTGCTCAAATAATTTGGTCATTGCTAGGTTTAAAAGCATCCAATGGTTTGTCAAGTCTGGAAGCCGCTTGAACCTCTCCCTTGGAACTGTTTTCTATGCTGCAAACTATCTTGATCGATTCATATCTATGAATAATGCATGGAAATACTGGATGGTGGAATTGTTGTCCATTGCTTGCTTATCCATTGCCTCCAAGTTTAATGACACCTGCTCTCCTACCCTGCTTGAAATTCAGATGGAGGATCTGGACTACTCTTTTGATTCCAGCACAATCCAACGAATGGAAATGATGGTGCTAGAGGCATTAGGATGGCGCCTTGCTTCTACAACAGCTTATTCCTACCTAGAACTGATGTTATCATTGGTTAGTCTTGACCCCGGATCCTTCAAACCTCAAATTCAGGAACAGTTGATATCCAGATTCAACAATTTGCTTCTTGGATCTATTTCAGACTCGAAGTTGCTGGAGTTTAGGCCAAGCGTGGTTGCGATATCTGCTCTAAGTTGCAGCCTAGATAAGTCACTAATTTCAAGTACTGCGTCTGATACCTACCTGGCCTGTGCTACAAGTCTACTGGATAATGATCAAAAGGCTGAGTTGGTCAAGTGCCAGAAGATCATGGAAGCACAATCAGTAGCTGATGATTGCTTATACAACTTATTAGCTTACGGAGCATTCCATTTCTGCCCTTCGAGTCCTACAACTGTGTTGCTCAAGGAGAAGATTAACCTTTCTCAGTATCATGTTGATTTCTCAGTCTTTAACTTGAGAGCTCCAAATGTGGACGCTGCAGAATCAACAAGGATCTGCCAGAAGAGAAAGAGGGAAGAGTGA

Protein Analysis

341

Amino Acids

38.51

Weight (kDa)

4.9

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 43 - 169 3.5e-22 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 404
Acc36I ACCTGC 1 cut(s) 404
AccB1I GGYRCC 1 cut(s) 501
AccB7I CCANNNNNTGG 1 cut(s) 469
AccI GTMKAC 1 cut(s) 760
AciI CCGC 1 cut(s) 253
AclWI GGATC 6 cut(s) 12, 438, 564, 577, 637, 1001
AcsI RAATTY 2 cut(s) 417, 585
AcyI GRCGYC 1 cut(s) 502
AfaI GTAC 1 cut(s) 724
AfiI CCNNNNNNNGG 1 cut(s) 469
AgsI TTSAA 5 cut(s) 259, 416, 577, 613, 720
AjnI CCWGG 1 cut(s) 741
AluBI AGCT 4 cut(s) 521, 827, 854, 962
AluI AGCT 4 cut(s) 521, 827, 854, 962
Alw21I GWGCWC 1 cut(s) 964
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 6 cut(s) 12, 438, 564, 577, 637, 1001
AlwNI CAGNNNCTG 1 cut(s) 827
AoxI GGCC 3 cut(s) 32, 662, 744
ApeKI GCWGC 3 cut(s) 287, 696, 977
ApoI RAATTY 2 cut(s) 417, 585
ArsI GACNNNNNNTTYG 2 cut(s) 428, 460
AspLEI GCGC 1 cut(s) 504
AsuC2I CCSGG 1 cut(s) 567
BamHI GGATCC 1 cut(s) 569
BanI GGYRCC 1 cut(s) 501
BanII GRGCYC 1 cut(s) 964
Bbv12I GWGCWC 1 cut(s) 964
BbvI GCAGC 3 cut(s) 274, 708, 964
BccI CCATC 4 cut(s) 334, 418, 472, 492
BciT130I CCWGG 1 cut(s) 743
BclI TGATCA 1 cut(s) 772
BcnI CCSGG 1 cut(s) 567
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 4 cut(s) 213, 485, 533, 701
BfmI CTRYAG 1 cut(s) 978
BfoI RGCGCY 1 cut(s) 505
BfuAI ACCTGC 1 cut(s) 404
BisI GCNGC 4 cut(s) 253, 288, 697, 978
BlsI GCNGC 4 cut(s) 254, 289, 698, 979
BmcAI AGTACT 1 cut(s) 724
Bme1390I CCNGG 2 cut(s) 567, 743
BmiI GGNNCC 2 cut(s) 503, 571
BmrFI CCNGG 2 cut(s) 567, 743
BmsI GCATC 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 674
BpuEI CTTGAG 2 cut(s) 887, 976
BpuMI CCSGG 1 cut(s) 567
Bsa29I ATCGAT 1 cut(s) 304
BsaAI YACGTR 1 cut(s) 178
BsaBI GATNNNNATC 2 cut(s) 310, 771
BsaHI GRCGYC 1 cut(s) 502
BsaJI CCNNGG 2 cut(s) 268, 565
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
Bsc4I CCNNNNNNNGG 1 cut(s) 469
Bse1I ACTGG 2 cut(s) 341, 768
Bse3DI GCAATG 3 cut(s) 207, 357, 372
Bse8I GATNNNNATC 2 cut(s) 310, 771
BseBI CCWGG 1 cut(s) 743
BseCI ATCGAT 1 cut(s) 304
BseDI CCNNGG 2 cut(s) 268, 565
BseGI GGATG 3 cut(s) 225, 345, 503
BseJI GATNNNNATC 2 cut(s) 310, 771
BseLI CCNNNNNNNGG 1 cut(s) 469
BseMI GCAATG 3 cut(s) 207, 357, 372
BseMII CTCAG 3 cut(s) 774, 938, 957
BseNI ACTGG 2 cut(s) 341, 768
BseXI GCAGC 3 cut(s) 274, 708, 964
BshFI GGCC 3 cut(s) 34, 664, 746
BshNI GGYRCC 1 cut(s) 501
BshVI ATCGAT 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 964
BsiSI CCGG 1 cut(s) 567
BslI CCNNNNNNNGG 1 cut(s) 469
BsmAI GTCTC 1 cut(s) 105
BsmI GAATGC 1 cut(s) 863
BsnI GGCC 3 cut(s) 34, 664, 746
Bsp1286I GDGCHC 1 cut(s) 964
Bsp143I GATC 8 cut(s) 4, 301, 430, 569, 629, 772, 804, 993
BspACI CCGC 1 cut(s) 253
BspANI GGCC 3 cut(s) 34, 664, 746
BspCNI CTCAG 3 cut(s) 775, 937, 956
BspDI ATCGAT 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 503, 571
BspMAI CTGCAG 1 cut(s) 982
BspMI ACCTGC 1 cut(s) 404
BspPI GGATC 6 cut(s) 12, 438, 564, 577, 637, 1001
BspT107I GGYRCC 1 cut(s) 501
BsrDI GCAATG 3 cut(s) 207, 357, 372
BsrI ACTGG 2 cut(s) 341, 768
BssECI CCNNGG 2 cut(s) 268, 565
BssMI GATC 8 cut(s) 4, 301, 430, 569, 629, 772, 804, 993
BssNI GRCGYC 1 cut(s) 502
BssT1I CCWWGG 1 cut(s) 268
Bst2UI CCWGG 1 cut(s) 743
Bst4CI ACNGT 3 cut(s) 277, 597, 895
Bst6I CTCTTC 2 cut(s) 998, 1011
BstACI GRCGYC 1 cut(s) 502
BstBAI YACGTR 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 364
BstDEI CTNAG 5 cut(s) 57, 689, 783, 924, 943
BstF5I GGATG 3 cut(s) 225, 345, 503
BstH2I RGCGCY 1 cut(s) 505
BstHHI GCGC 1 cut(s) 504
BstKTI GATC 8 cut(s) 7, 304, 433, 572, 632, 775, 807, 996
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 8 cut(s) 4, 301, 430, 569, 629, 772, 804, 993
BstMWI GCNNNNNNNGC 2 cut(s) 683, 860
BstNI CCWGG 1 cut(s) 743
BstNSI RCATGY 1 cut(s) 163
BstSCI CCNGG 2 cut(s) 565, 741
BstSFI CTRYAG 1 cut(s) 978
BstSNI TACGTA 1 cut(s) 178
BstV1I GCAGC 3 cut(s) 274, 708, 964
BstX2I RGATCY 4 cut(s) 430, 569, 629, 993
BstXI CCANNNNNNTGG 2 cut(s) 46, 139
BstYI RGATCY 4 cut(s) 430, 569, 629, 993
Bsu15I ATCGAT 1 cut(s) 304
BsuRI GGCC 3 cut(s) 34, 664, 746
BsuTUI ATCGAT 1 cut(s) 304
BtgZI GCGATG 1 cut(s) 36
BtsCI GGATG 3 cut(s) 225, 345, 503
BveI ACCTGC 1 cut(s) 404
Cac8I GCNNGC 1 cut(s) 364
CaiI CAGNNNCTG 1 cut(s) 827
CfoI GCGC 1 cut(s) 504
ClaI ATCGAT 1 cut(s) 304
CseI GACGC 2 cut(s) 717, 983
Csp6I GTAC 1 cut(s) 723
CviAII CATG 5 cut(s) 67, 160, 327, 808, 932
CviQI GTAC 1 cut(s) 723
DdeI CTNAG 5 cut(s) 57, 689, 783, 924, 943
DinI GGCGCC 1 cut(s) 503
DpnI GATC 8 cut(s) 6, 303, 432, 571, 631, 774, 806, 995
DpnII GATC 8 cut(s) 4, 301, 430, 569, 629, 772, 804, 993
DraI TTTAAA 1 cut(s) 220
Eam1104I CTCTTC 2 cut(s) 998, 1011
EarI CTCTTC 2 cut(s) 998, 1011
Ecl136II GAGCTC 1 cut(s) 962
Eco105I TACGTA 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 268
Eco24I GRGCYC 1 cut(s) 964
Eco32I GATATC 2 cut(s) 603, 681
Eco53kI GAGCTC 1 cut(s) 962
EcoICRI GAGCTC 1 cut(s) 962
EcoRII CCWGG 1 cut(s) 741
EcoRV GATATC 2 cut(s) 603, 681
EcoT14I CCWWGG 1 cut(s) 268
EcoT22I ATGCAT 1 cut(s) 328
EcoT38I GRGCYC 1 cut(s) 964
EgeI GGCGCC 1 cut(s) 503
EheI GGCGCC 1 cut(s) 503
ErhI CCWWGG 1 cut(s) 268
FaeI CATG 5 cut(s) 70, 163, 330, 811, 935
FatI CATG 5 cut(s) 66, 159, 326, 807, 931
FauNDI CATATG 1 cut(s) 134
FbaI TGATCA 1 cut(s) 772
FblI GTMKAC 1 cut(s) 760
Fnu4HI GCNGC 4 cut(s) 253, 288, 697, 978
FokI GGATG 3 cut(s) 212, 352, 510
FriOI GRGCYC 1 cut(s) 964
Fsp4HI GCNGC 4 cut(s) 253, 288, 697, 978
FspBI CTAG 4 cut(s) 213, 485, 533, 701
GlaI GCGC 1 cut(s) 503
GluI GCNGC 4 cut(s) 253, 288, 697, 978
GsuI CTGGAG 1 cut(s) 674
HaeII RGCGCY 1 cut(s) 505
HaeIII GGCC 3 cut(s) 34, 664, 746
HapII CCGG 1 cut(s) 567
HgaI GACGC 2 cut(s) 717, 983
HhaI GCGC 1 cut(s) 504
Hin1I GRCGYC 1 cut(s) 502
Hin1II CATG 5 cut(s) 70, 163, 330, 811, 935
Hin6I GCGC 1 cut(s) 502
HinP1I GCGC 1 cut(s) 502
HinfI GANTC 8 cut(s) 122, 184, 306, 449, 609, 641, 883, 983
HpaII CCGG 1 cut(s) 567
Hpy166II GTNNAC 2 cut(s) 761, 973
Hpy188I TCNGA 3 cut(s) 423, 640, 733
Hpy188III TCNNGA 6 cut(s) 246, 299, 434, 560, 590, 606
Hpy8I GTNNAC 2 cut(s) 761, 973
HpyAV CCTTC 4 cut(s) 45, 139, 583, 888
HpyCH4III ACNGT 3 cut(s) 277, 597, 895
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 5 cut(s) 98, 290, 326, 696, 980
HpyF10VI GCNNNNNNNGC 2 cut(s) 683, 860
HpyF3I CTNAG 5 cut(s) 57, 689, 783, 924, 943
HpySE526I ACGT 1 cut(s) 177
Hsp92I GRCGYC 1 cut(s) 502
Hsp92II CATG 5 cut(s) 70, 163, 330, 811, 935
HspAI GCGC 1 cut(s) 502
KasI GGCGCC 1 cut(s) 501
Ksp22I TGATCA 1 cut(s) 772
Kzo9I GATC 8 cut(s) 4, 301, 430, 569, 629, 772, 804, 993
LmnI GCTCC 2 cut(s) 860, 967
Lsp1109I GCAGC 3 cut(s) 274, 708, 964
LweI GCATC 1 cut(s) 234
MaeI CTAG 4 cut(s) 213, 485, 533, 701
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 155, 708
MalI GATC 8 cut(s) 6, 303, 432, 571, 631, 774, 806, 995
MboI GATC 8 cut(s) 4, 301, 430, 569, 629, 772, 804, 993
MboII GAAGA 3 cut(s) 814, 922, 1015
MflI RGATCY 4 cut(s) 430, 569, 629, 993
MhlI GDGCHC 1 cut(s) 964
MluCI AATT 6 cut(s) 199, 347, 417, 585, 616, 714
Mly113I GGCGCC 1 cut(s) 502
MlyI GAGTC 2 cut(s) 635, 892
MmeI TCCRAC 1 cut(s) 487
MnlI CCTC 7 cut(s) 19, 272, 388, 421, 481, 591, 1005
Mph1103I ATGCAT 1 cut(s) 328
MseI TTAA 4 cut(s) 219, 387, 915, 951
MslI CAYNNNNRTG 2 cut(s) 314, 496
MspI CCGG 1 cut(s) 567
MspR9I CCNGG 2 cut(s) 567, 743
Mva1269I GAATGC 1 cut(s) 863
MvaI CCWGG 1 cut(s) 743
MwoI GCNNNNNNNGC 2 cut(s) 683, 860
NarI GGCGCC 1 cut(s) 502
NciI CCSGG 1 cut(s) 567
NdeI CATATG 1 cut(s) 134
NdeII GATC 8 cut(s) 4, 301, 430, 569, 629, 772, 804, 993
NlaIII CATG 5 cut(s) 70, 163, 330, 811, 935
NlaIV GGNNCC 2 cut(s) 503, 571
NmuCI GTSAC 1 cut(s) 708
NsiI ATGCAT 1 cut(s) 328
NspI RCATGY 1 cut(s) 163
PaqCI CACCTGC 1 cut(s) 404
PctI GAATGC 1 cut(s) 863
PfeI GAWTC 6 cut(s) 122, 184, 306, 449, 609, 983
PflMI CCANNNNNTGG 1 cut(s) 469
PkrI GCNGC 4 cut(s) 254, 289, 698, 979
PleI GAGTC 2 cut(s) 635, 891
PluTI GGCGCC 1 cut(s) 505
PpsI GAGTC 2 cut(s) 635, 891
Ppu21I YACGTR 1 cut(s) 178
Psp124BI GAGCTC 1 cut(s) 964
Psp6I CCWGG 1 cut(s) 741
PspGI CCWGG 1 cut(s) 741
PspN4I GGNNCC 2 cut(s) 503, 571
PstI CTGCAG 1 cut(s) 982
PstNI CAGNNNCTG 1 cut(s) 827
PsuI RGATCY 4 cut(s) 430, 569, 629, 993
RsaI GTAC 1 cut(s) 724
RsaNI GTAC 1 cut(s) 723
RseI CAYNNNNRTG 2 cut(s) 314, 496
SacI GAGCTC 1 cut(s) 964
SaqAI TTAA 4 cut(s) 219, 387, 915, 951
SatI GCNGC 4 cut(s) 253, 288, 697, 978
Sau3AI GATC 8 cut(s) 4, 301, 430, 569, 629, 772, 804, 993
ScaI AGTACT 1 cut(s) 724
SchI GAGTC 2 cut(s) 635, 892
ScrFI CCNGG 2 cut(s) 567, 743
SduI GDGCHC 1 cut(s) 964
SfaNI GCATC 1 cut(s) 234
SfcI CTRYAG 1 cut(s) 978
SfoI GGCGCC 1 cut(s) 503
SmiMI CAYNNNNRTG 2 cut(s) 314, 496
SmlI CTYRAG 2 cut(s) 902, 955
SmoI CTYRAG 2 cut(s) 902, 955
SnaBI TACGTA 1 cut(s) 178
Sse9I AATT 6 cut(s) 199, 347, 417, 585, 616, 714
SsiI CCGC 1 cut(s) 253
SspDI GGCGCC 1 cut(s) 501
SspMI CTAG 4 cut(s) 213, 485, 533, 701
SstI GAGCTC 1 cut(s) 964
StyD4I CCNGG 2 cut(s) 565, 741
StyI CCWWGG 1 cut(s) 268
TaaI ACNGT 3 cut(s) 277, 597, 895
TaiI ACGT 1 cut(s) 180
TaqI TCGA 3 cut(s) 304, 644, 881
TasI AATT 6 cut(s) 199, 347, 417, 585, 616, 714
TatI WGTACW 1 cut(s) 722
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 6 cut(s) 122, 184, 306, 449, 609, 983
Tru1I TTAA 4 cut(s) 219, 387, 915, 951
Tru9I TTAA 4 cut(s) 219, 387, 915, 951
TseFI GTSAC 1 cut(s) 708
TseI GCWGC 3 cut(s) 287, 696, 977
Tsp45I GTSAC 1 cut(s) 708
TspDTI ATGAA 3 cut(s) 135, 298, 332
TspGWI ACGGA 1 cut(s) 873
Van91I CCANNNNNTGG 1 cut(s) 469
XapI RAATTY 2 cut(s) 417, 585
XceI RCATGY 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 760
XspI CTAG 4 cut(s) 213, 485, 533, 701
ZrmI AGTACT 1 cut(s) 724
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.