Rh3BG146500

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0010288
Physical Location & Seq
Forward (+)
12457470 .. 12458673
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG146500.1

Sequence Viewer

Length: 696 bp
ATGGTGGAATTGTTGTCTATTGCTTGCTTATCCATTGCCTCCAAGTTTAATGACACCTGCTCTCCTACCTTGCTTGAAATTCAGAGGGAGGATCTGGACTACTCTTTTGACTCCATCACAATCCAACGAATGGAAATAATGGTGCTAGAGGCATTAGGATGGCGCATTGCTTCTACAACAGCTTACTCGTACCTAGAACTGCTGTTATCATTGATCAATCTTGACTCCAGATCCTTTAAACCTCAAATTCAGGAACAGTTGATTACCAAATTCAACAACTTGCTTCTTGGAGCTATTTCAGACTCGAAGCTGCTGGAGTTTAGGCCAAGCGTGGTTGCCATATCTGCTCTAAGTTGCAGCCTAGACAAGTCAATTATTTCAAGTACAGCATCTGATACCTACCTAGCCTGTGCTACAAGTCTACTGGATAACAATCAAAAGGCTGAGTTGGTCAAGTGCCAGAAGCTCATGGAAGCACAAGCAGTAGCTGATGATTGCTTCTACAACTTACTAGCTCACAGGGTTTTCCATTTCTGCCCTTCAAGTCCCACAACTGTGTTGCTGAAGGAGCGGATTAACTTTTCTCATTATCATGTTGATTTCTCCCTCTTTAAGATGAGAGCTCAAAGAATGGACACTGCGGAATCAACAGCAAGGATCTGCCGGAAGAGAAAGAGGGAAGAAGAAGAAGAGTAA

Protein Analysis

231

Amino Acids

26.23

Weight (kDa)

5.49

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 2 - 56 2e-08 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 65
AccB7I CCANNNNNTGG 1 cut(s) 130
AccBSI CCGCTC 1 cut(s) 571
AccI GTMKAC 1 cut(s) 421
AciI CCGC 2 cut(s) 571, 641
AclWI GGATC 3 cut(s) 99, 225, 665
AcsI RAATTY 3 cut(s) 78, 246, 269
AcuI CTGAAG 1 cut(s) 584
AfaI GTAC 2 cut(s) 191, 385
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 4 cut(s) 77, 274, 381, 543
AleI CACNNNNGTG 1 cut(s) 554
AluBI AGCT 7 cut(s) 182, 293, 310, 466, 488, 515, 623
AluI AGCT 7 cut(s) 182, 293, 310, 466, 488, 515, 623
Alw21I GWGCWC 1 cut(s) 625
AlwI GGATC 3 cut(s) 99, 225, 665
AlwNI CAGNNNCTG 2 cut(s) 392, 488
AoxI GGCC 1 cut(s) 323
ApeKI GCWGC 2 cut(s) 310, 357
ApoI RAATTY 3 cut(s) 78, 246, 269
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AspLEI GCGC 1 cut(s) 165
BanII GRGCYC 1 cut(s) 625
Bbv12I GWGCWC 1 cut(s) 625
BbvI GCAGC 2 cut(s) 297, 369
BccI CCATC 2 cut(s) 122, 153
BclI TGATCA 1 cut(s) 213
BfaI CTAG 5 cut(s) 146, 194, 362, 404, 512
BfuAI ACCTGC 1 cut(s) 65
BisI GCNGC 2 cut(s) 311, 358
BlsI GCNGC 2 cut(s) 312, 359
BmsI GCATC 1 cut(s) 398
BpmI CTGGAG 2 cut(s) 211, 335
BsaBI GATNNNNATC 1 cut(s) 432
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 429
Bse3DI GCAATG 2 cut(s) 33, 165
Bse8I GATNNNNATC 1 cut(s) 432
BseGI GGATG 1 cut(s) 164
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMI GCAATG 2 cut(s) 33, 165
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 1 cut(s) 429
BseXI GCAGC 2 cut(s) 297, 369
BshFI GGCC 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 625
BsiSI CCGG 1 cut(s) 664
BslFI GGGAC 1 cut(s) 531
BslI CCNNNNNNNGG 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 531
BsnI GGCC 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 625
Bsp143I GATC 4 cut(s) 91, 213, 230, 657
BspACI CCGC 2 cut(s) 571, 641
BspANI GGCC 1 cut(s) 325
BspCNI CTCAG 1 cut(s) 436
BspMI ACCTGC 1 cut(s) 65
BspPI GGATC 3 cut(s) 99, 225, 665
BsrBI CCGCTC 1 cut(s) 571
BsrDI GCAATG 2 cut(s) 33, 165
BsrI ACTGG 1 cut(s) 429
BssMI GATC 4 cut(s) 91, 213, 230, 657
Bst4CI ACNGT 2 cut(s) 258, 556
Bst6I CTCTTC 2 cut(s) 662, 684
BstC8I GCNNGC 1 cut(s) 25
BstDEI CTNAG 2 cut(s) 350, 444
BstF5I GGATG 1 cut(s) 164
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 4 cut(s) 94, 216, 233, 660
BstMBI GATC 4 cut(s) 91, 213, 230, 657
BstMWI GCNNNNNNNGC 2 cut(s) 344, 568
BstV1I GCAGC 2 cut(s) 297, 369
BstX2I RGATCY 3 cut(s) 91, 230, 657
BstYI RGATCY 3 cut(s) 91, 230, 657
BsuRI GGCC 1 cut(s) 325
BtsCI GGATG 1 cut(s) 164
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 1 cut(s) 636
BveI ACCTGC 1 cut(s) 65
Cac8I GCNNGC 1 cut(s) 25
CaiI CAGNNNCTG 2 cut(s) 392, 488
CfoI GCGC 1 cut(s) 165
Csp6I GTAC 2 cut(s) 190, 384
CviAII CATG 2 cut(s) 469, 593
CviQI GTAC 2 cut(s) 190, 384
DdeI CTNAG 2 cut(s) 350, 444
DpnI GATC 4 cut(s) 93, 215, 232, 659
DpnII GATC 4 cut(s) 91, 213, 230, 657
DraI TTTAAA 1 cut(s) 238
Eam1104I CTCTTC 2 cut(s) 662, 684
EarI CTCTTC 2 cut(s) 662, 684
Ecl136II GAGCTC 1 cut(s) 623
Eco24I GRGCYC 1 cut(s) 625
Eco53kI GAGCTC 1 cut(s) 623
Eco57I CTGAAG 1 cut(s) 584
EcoICRI GAGCTC 1 cut(s) 623
EcoT38I GRGCYC 1 cut(s) 625
FaeI CATG 2 cut(s) 472, 596
FaiI YATR 3 cut(s) 341, 470, 594
FaqI GGGAC 1 cut(s) 531
FatI CATG 2 cut(s) 468, 592
FbaI TGATCA 1 cut(s) 213
FblI GTMKAC 1 cut(s) 421
Fnu4HI GCNGC 2 cut(s) 311, 358
FokI GGATG 1 cut(s) 171
FriOI GRGCYC 1 cut(s) 625
Fsp4HI GCNGC 2 cut(s) 311, 358
FspBI CTAG 5 cut(s) 146, 194, 362, 404, 512
GlaI GCGC 1 cut(s) 164
GluI GCNGC 2 cut(s) 311, 358
GsuI CTGGAG 2 cut(s) 211, 335
HaeIII GGCC 1 cut(s) 325
HapII CCGG 1 cut(s) 664
HhaI GCGC 1 cut(s) 165
Hin1II CATG 2 cut(s) 472, 596
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HinfI GANTC 4 cut(s) 110, 224, 302, 644
HpaII CCGG 1 cut(s) 664
Hpy166II GTNNAC 1 cut(s) 422
Hpy188I TCNGA 3 cut(s) 84, 301, 394
Hpy188III TCNNGA 4 cut(s) 95, 221, 228, 251
Hpy8I GTNNAC 1 cut(s) 422
HpyAV CCTTC 2 cut(s) 549, 559
HpyCH4III ACNGT 2 cut(s) 258, 556
HpyCH4V TGCA 1 cut(s) 357
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 568
HpyF3I CTNAG 2 cut(s) 350, 444
Hsp92II CATG 2 cut(s) 472, 596
HspAI GCGC 1 cut(s) 163
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 4 cut(s) 91, 213, 230, 657
LmnI GCTCC 2 cut(s) 290, 568
Lsp1109I GCAGC 2 cut(s) 297, 369
LweI GCATC 1 cut(s) 398
MaeI CTAG 5 cut(s) 146, 194, 362, 404, 512
MalI GATC 4 cut(s) 93, 215, 232, 659
MbiI CCGCTC 1 cut(s) 571
MboI GATC 4 cut(s) 91, 213, 230, 657
MboII GAAGA 3 cut(s) 679, 692, 695
MflI RGATCY 3 cut(s) 91, 230, 657
MhlI GDGCHC 1 cut(s) 625
MluCI AATT 5 cut(s) 8, 78, 246, 269, 372
MlyI GAGTC 3 cut(s) 104, 218, 296
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 7 cut(s) 49, 78, 82, 142, 252, 617, 669
MseI TTAA 4 cut(s) 48, 237, 576, 612
MslI CAYNNNNRTG 3 cut(s) 157, 554, 591
MspI CCGG 1 cut(s) 664
MwoI GCNNNNNNNGC 2 cut(s) 344, 568
NdeII GATC 4 cut(s) 91, 213, 230, 657
NlaIII CATG 2 cut(s) 472, 596
OliI CACNNNNGTG 1 cut(s) 554
PaqCI CACCTGC 1 cut(s) 65
PfeI GAWTC 1 cut(s) 644
PflMI CCANNNNNTGG 1 cut(s) 130
PkrI GCNGC 2 cut(s) 312, 359
PleI GAGTC 3 cut(s) 104, 218, 296
PpsI GAGTC 3 cut(s) 104, 218, 296
Psp124BI GAGCTC 1 cut(s) 625
PstNI CAGNNNCTG 2 cut(s) 392, 488
PsuI RGATCY 3 cut(s) 91, 230, 657
RsaI GTAC 2 cut(s) 191, 385
RsaNI GTAC 2 cut(s) 190, 384
RseI CAYNNNNRTG 3 cut(s) 157, 554, 591
SacI GAGCTC 1 cut(s) 625
SaqAI TTAA 4 cut(s) 48, 237, 576, 612
SatI GCNGC 2 cut(s) 311, 358
Sau3AI GATC 4 cut(s) 91, 213, 230, 657
SchI GAGTC 3 cut(s) 104, 218, 296
SduI GDGCHC 1 cut(s) 625
SfaNI GCATC 1 cut(s) 398
SmiMI CAYNNNNRTG 3 cut(s) 157, 554, 591
Sse9I AATT 5 cut(s) 8, 78, 246, 269, 372
SsiI CCGC 2 cut(s) 571, 641
SspMI CTAG 5 cut(s) 146, 194, 362, 404, 512
SstI GAGCTC 1 cut(s) 625
TaaI ACNGT 2 cut(s) 258, 556
TaqI TCGA 1 cut(s) 305
TasI AATT 5 cut(s) 8, 78, 246, 269, 372
TatI WGTACW 1 cut(s) 383
TfiI GAWTC 1 cut(s) 644
Tru1I TTAA 4 cut(s) 48, 237, 576, 612
Tru9I TTAA 4 cut(s) 48, 237, 576, 612
TscAI CASTG 1 cut(s) 643
TseI GCWGC 2 cut(s) 310, 357
TspRI CASTG 1 cut(s) 643
Van91I CCANNNNNTGG 1 cut(s) 130
XapI RAATTY 3 cut(s) 78, 246, 269
XmiI GTMKAC 1 cut(s) 421
XspI CTAG 5 cut(s) 146, 194, 362, 404, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.