Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029260.1

Orthogroup ID

OG0010288

Physical Location & Seq

Genomic Coordinates Forward (+)

1644 .. 3390

Gene Structure 1747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029260.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atggatcaaagtttgctctgcgatgaggtgtggccttccagccctttgacgactgctatgaactacatgattgattgtggaacattatcaatgtatgcaagaagtaaggatgactatgatgaatcttttactatatgcttggagaaggagatgagttacatgccccaaccgaactacgtagaaaatctctgctcaaatcatttggtcattgctaggtttaaaagcattcaatggtttatcaagtctagaagccgcttgaacctctcccttagaactgttttttatgctgcaaactaccttgatcgcttcatatctatgaatcactgtaatgctgagttggtcaagtgccagaagctcatggaagcacaagcagtagctgatgattgcttctacaacttactagctcacagggttttccatttctgcccttcaagtcccacaactgtgttgctgaaggagcggattaacttttctcattatcatgttgatttctccctctttaagatgagagctcaaagaatggacactgcggaatcaacagcaaggatctgccggaagagaaagagggaagaagaagaagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051726 GO:0061458 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

194

Amino Acids

22.87

Weight (kDa)

6.59

Isoelectric Point (pI)

58.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02110 AT5G02110
fragaria_vesca	FvH4_6g13230
malus_domestica	MD04G1133300.v1.1 MD12G1146100.v1.1
prunus_persica	Prupe.6G259300_v2.0.a1
pyrus_communis	pycom12g14010
rosa_chinensis	RchiOBHm_Chr3g0466061
rosa_laevigata	RLG00000024606
rosa_multiflora	Rmu_sc0005135.1_g000003 Rmu_sc0007597.1_g000002 Rmu_sc0007597.1_g000004 Rmu_sc0029260.1_g000002
rosa_roxburghii	Rroxscaffold_6G00414830
rosa_rugosa	Rorug03G0079200
rosa_samantha	Rh3BG146400 Rh3BG146500 Rh3CG147300 Rh3DG147300 Rh3DG147400
rosa_wichuraiana	Rw3G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	460
AciI	CCGC	3 cut(s)	253, 460, 530
AclWI	GGATC	2 cut(s)	12, 554
AcuI	CTGAAG	1 cut(s)	473
AgsI	TTSAA	3 cut(s)	230, 259, 432
AleI	CACNNNNGTG	1 cut(s)	443
AluBI	AGCT	4 cut(s)	355, 377, 404, 512
AluI	AGCT	4 cut(s)	355, 377, 404, 512
Alw21I	GWGCWC	1 cut(s)	514
AlwI	GGATC	2 cut(s)	12, 554
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	514
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	1 cut(s)	274
BfaI	CTAG	3 cut(s)	213, 246, 401
BisI	GCNGC	2 cut(s)	253, 288
BlsI	GCNGC	2 cut(s)	254, 289
BsaAI	YACGTR	1 cut(s)	178
Bse3DI	GCAATG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	324
BseXI	GCAGC	1 cut(s)	274
BshFI	GGCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	514
BsiSI	CCGG	1 cut(s)	553
BslFI	GGGAC	1 cut(s)	420
BsmFI	GGGAC	1 cut(s)	420
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	514
Bsp143I	GATC	3 cut(s)	4, 301, 546
BspACI	CCGC	3 cut(s)	253, 460, 530
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	1 cut(s)	325
BspPI	GGATC	2 cut(s)	12, 554
BsrBI	CCGCTC	1 cut(s)	460
BsrDI	GCAATG	1 cut(s)	207
BssMI	GATC	3 cut(s)	4, 301, 546
Bst4CI	ACNGT	3 cut(s)	277, 326, 445
Bst6I	CTCTTC	2 cut(s)	551, 573
BstBAI	YACGTR	1 cut(s)	178
BstDEI	CTNAG	2 cut(s)	269, 333
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	3 cut(s)	7, 304, 549
BstMBI	GATC	3 cut(s)	4, 301, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	457
BstNSI	RCATGY	1 cut(s)	163
BstSNI	TACGTA	1 cut(s)	178
BstV1I	GCAGC	1 cut(s)	274
BstX2I	RGATCY	1 cut(s)	546
BstYI	RGATCY	1 cut(s)	546
BsuRI	GGCC	1 cut(s)	34
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	115
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	2 cut(s)	322, 525
CaiI	CAGNNNCTG	1 cut(s)	377
CviAII	CATG	4 cut(s)	67, 160, 358, 482
CviJI	RGCY	7 cut(s)	34, 42, 252, 355, 377, 404, 512
CviKI_1	RGCY	7 cut(s)	34, 42, 252, 355, 377, 404, 512
DdeI	CTNAG	2 cut(s)	269, 333
DpnI	GATC	3 cut(s)	6, 303, 548
DpnII	GATC	3 cut(s)	4, 301, 546
DraI	TTTAAA	1 cut(s)	220
Eam1104I	CTCTTC	2 cut(s)	551, 573
EarI	CTCTTC	2 cut(s)	551, 573
Ecl136II	GAGCTC	1 cut(s)	512
Eco105I	TACGTA	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	514
Eco53kI	GAGCTC	1 cut(s)	512
Eco57I	CTGAAG	1 cut(s)	473
EcoICRI	GAGCTC	1 cut(s)	512
EcoT38I	GRGCYC	1 cut(s)	514
FaeI	CATG	4 cut(s)	70, 163, 361, 485
FaqI	GGGAC	1 cut(s)	420
FatI	CATG	4 cut(s)	66, 159, 357, 481
Fnu4HI	GCNGC	2 cut(s)	253, 288
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	514
Fsp4HI	GCNGC	2 cut(s)	253, 288
FspBI	CTAG	3 cut(s)	213, 246, 401
GluI	GCNGC	2 cut(s)	253, 288
HaeIII	GGCC	1 cut(s)	34
HapII	CCGG	1 cut(s)	553
Hin1II	CATG	4 cut(s)	70, 163, 361, 485
HinfI	GANTC	3 cut(s)	122, 319, 533
HpaII	CCGG	1 cut(s)	553
Hpy188III	TCNNGA	1 cut(s)	246
HpyAV	CCTTC	4 cut(s)	45, 139, 438, 448
HpyCH4III	ACNGT	3 cut(s)	277, 326, 445
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	2 cut(s)	98, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	457
HpyF3I	CTNAG	2 cut(s)	269, 333
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	4 cut(s)	70, 163, 361, 485
Kzo9I	GATC	3 cut(s)	4, 301, 546
LmnI	GCTCC	1 cut(s)	457
LpnPI	CCDG	4 cut(s)	52, 362, 394, 566
Lsp1109I	GCAGC	1 cut(s)	274
MaeI	CTAG	3 cut(s)	213, 246, 401
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	3 cut(s)	6, 303, 548
MbiI	CCGCTC	1 cut(s)	460
MboI	GATC	3 cut(s)	4, 301, 546
MboII	GAAGA	3 cut(s)	568, 581, 584
MflI	RGATCY	1 cut(s)	546
MhlI	GDGCHC	1 cut(s)	514
MnlI	CCTC	4 cut(s)	19, 272, 506, 558
MseI	TTAA	3 cut(s)	219, 465, 501
MslI	CAYNNNNRTG	4 cut(s)	314, 327, 443, 480
MspI	CCGG	1 cut(s)	553
Mva1269I	GAATGC	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	457
NdeII	GATC	3 cut(s)	4, 301, 546
NlaIII	CATG	4 cut(s)	70, 163, 361, 485
NspI	RCATGY	1 cut(s)	163
OliI	CACNNNNGTG	1 cut(s)	443
PctI	GAATGC	1 cut(s)	225
PfeI	GAWTC	3 cut(s)	122, 319, 533
PkrI	GCNGC	2 cut(s)	254, 289
Ppu21I	YACGTR	1 cut(s)	178
Psp124BI	GAGCTC	1 cut(s)	514
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	546
RseI	CAYNNNNRTG	4 cut(s)	314, 327, 443, 480
SacI	GAGCTC	1 cut(s)	514
SaqAI	TTAA	3 cut(s)	219, 465, 501
SatI	GCNGC	2 cut(s)	253, 288
Sau3AI	GATC	3 cut(s)	4, 301, 546
SduI	GDGCHC	1 cut(s)	514
SetI	ASST	9 cut(s)	30, 180, 218, 264, 300, 357, 379, 406, 514
SmiMI	CAYNNNNRTG	4 cut(s)	314, 327, 443, 480
SnaBI	TACGTA	1 cut(s)	178
SsiI	CCGC	3 cut(s)	253, 460, 530
SspMI	CTAG	3 cut(s)	213, 246, 401
SstI	GAGCTC	1 cut(s)	514
TaaI	ACNGT	3 cut(s)	277, 326, 445
TaiI	ACGT	1 cut(s)	180
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	3 cut(s)	122, 319, 533
Tru1I	TTAA	3 cut(s)	219, 465, 501
Tru9I	TTAA	3 cut(s)	219, 465, 501
TscAI	CASTG	2 cut(s)	329, 532
TseI	GCWGC	1 cut(s)	287
TspDTI	ATGAA	4 cut(s)	74, 135, 298, 332
TspRI	CASTG	2 cut(s)	329, 532
XbaI	TCTAGA	1 cut(s)	245
XceI	RCATGY	1 cut(s)	163
XspI	CTAG	3 cut(s)	213, 246, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.