Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010288

Physical Location & Seq

Genomic Coordinates Reverse (-)

37092688 .. 37094479

Gene Structure 1792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00414830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGATCAAAGTTTGCTCTGCGATGAGGTGTGGCCTTCCAGCCCTTTGGCTACTGCTATGAACTACATGATTGATTGTGGAACATTATCAATATATGCAAGAAGTAAGGACGACTATGATGAATCTTTTACCATATGCTTGGAGAAGGAGATGAGTTACATGCCCCAACCGAACTACGTAGAAAATCTCTGCTCAAATTATTTGGTCATTGCTAGGTTTAAAAGCATTCAATGGTTTATCAAGTCTAGAAGCCGCTTGAACCTCTCCATTGGAACTGTTTTTTATGCTGCAAACTACCTTGATCGCTTCATATCTATGAATCACTGTAATCCATGGAAATATTGGATGGTGGAATTGTTGTCTGTTGCTTGCTTATCCATTGCCTCCAAGTTTAATGACACCTGCTCTCCTACCCTGCTTGAAATTCAGAGGGAGGATCTGGACTACTCTTTTGACTCCATCACAATCCAACGAATGGAAATAATGGTGCTAGAGGCATTAGGATGGCGCATTGCTTCTACAACAGCTTACTCGTACCTAGAACTGTTGTTGTCATTGATTAATCTTGACTCTAGATCCTTTAAACCTCAAATTCAGGAACAGTTGATTGCCAAATTCAACAATTTGCTTCTTGGAGCTATTTCAGACTCGAAGCTGCTGGAGTTTAGGCCAAGCGTGGTTGCCATATCTGCTCTAAGTTGCAGCCTAGACAAGTCAATTATTTCAAGTACAGCATCTGATACCTACCTAGCCTGTGCTACAAGTCTACTGGATAACAATCAAAAGGCTGAGTTGGTCAAGTGCCAGAAGCTCATGGAAGCACAATCAGTAGCTGATGATTGCTTCTACAACTTACTAGCTCACAGGGTTTTCCATTTCTGCCCTTCAAGTCCCACAACTGTGTTGCTGAAGGAGCGGATTAACTTTTCTCATTATCATGTTGATTTCTCCCTCTTTAAGATGAGAGCTCAAAGAATGGACACTGCGGAATCAACAGCAAGGACCTGCCGGAAGAGAAAGAGGGAAGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051726 GO:0061458 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

344

Amino Acids

39.49

Weight (kDa)

5.67

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	43 - 171	1.6e-19	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02110 AT5G02110
fragaria_vesca	FvH4_6g13230
malus_domestica	MD04G1133300.v1.1 MD12G1146100.v1.1
prunus_persica	Prupe.6G259300_v2.0.a1
pyrus_communis	pycom12g14010
rosa_chinensis	RchiOBHm_Chr3g0466061
rosa_laevigata	RLG00000024606
rosa_multiflora	Rmu_sc0005135.1_g000003 Rmu_sc0007597.1_g000002 Rmu_sc0007597.1_g000004 Rmu_sc0029260.1_g000002
rosa_roxburghii	Rroxscaffold_6G00414830
rosa_rugosa	Rorug03G0079200
rosa_samantha	Rh3BG146400 Rh3BG146500 Rh3CG147300 Rh3DG147300 Rh3DG147400
rosa_wichuraiana	Rw3G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	410
Acc36I	ACCTGC	2 cut(s)	410, 1013
AccB7I	CCANNNNNTGG	1 cut(s)	475
AccBSI	CCGCTC	1 cut(s)	916
AccI	GTMKAC	1 cut(s)	766
AciI	CCGC	3 cut(s)	253, 916, 986
AclWI	GGATC	3 cut(s)	12, 444, 570
AcsI	RAATTY	3 cut(s)	423, 591, 614
AcuI	CTGAAG	1 cut(s)	929
AfaI	GTAC	2 cut(s)	536, 730
AfiI	CCNNNNNNNGG	1 cut(s)	475
AgsI	TTSAA	6 cut(s)	230, 259, 422, 619, 726, 888
AleI	CACNNNNGTG	1 cut(s)	899
AluBI	AGCT	7 cut(s)	527, 638, 655, 811, 833, 860, 968
AluI	AGCT	7 cut(s)	527, 638, 655, 811, 833, 860, 968
Alw21I	GWGCWC	1 cut(s)	970
AlwI	GGATC	3 cut(s)	12, 444, 570
AlwNI	CAGNNNCTG	2 cut(s)	737, 833
AoxI	GGCC	2 cut(s)	32, 668
ApeKI	GCWGC	3 cut(s)	287, 655, 702
ApoI	RAATTY	3 cut(s)	423, 591, 614
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AseI	ATTAAT	1 cut(s)	561
AspLEI	GCGC	1 cut(s)	510
AspS9I	GGNCC	1 cut(s)	1002
AvaII	GGWCC	1 cut(s)	1002
BanII	GRGCYC	1 cut(s)	970
Bbv12I	GWGCWC	1 cut(s)	970
BbvI	GCAGC	3 cut(s)	274, 642, 714
BccI	CCATC	3 cut(s)	340, 467, 498
BfaI	CTAG	8 cut(s)	213, 246, 491, 539, 573, 707, 749, 857
BfuAI	ACCTGC	2 cut(s)	410, 1013
BisI	GCNGC	4 cut(s)	253, 288, 656, 703
BlsI	GCNGC	4 cut(s)	254, 289, 657, 704
Bme18I	GGWCC	1 cut(s)	1002
BmgT120I	GGNCC	1 cut(s)	1002
BmsI	GCATC	1 cut(s)	743
BpmI	CTGGAG	1 cut(s)	680
BsaAI	YACGTR	1 cut(s)	178
BsaBI	GATNNNNATC	1 cut(s)	777
BsaJI	CCNNGG	1 cut(s)	332
BsaXI	ACNNNNNCTCC	2 cut(s)	391, 421
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse1I	ACTGG	1 cut(s)	774
Bse3DI	GCAATG	3 cut(s)	207, 378, 510
Bse8I	GATNNNNATC	1 cut(s)	777
BseDI	CCNNGG	1 cut(s)	332
BseGI	GGATG	2 cut(s)	351, 509
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMI	GCAATG	3 cut(s)	207, 378, 510
BseMII	CTCAG	1 cut(s)	780
BseNI	ACTGG	1 cut(s)	774
BseXI	GCAGC	3 cut(s)	274, 642, 714
BshFI	GGCC	2 cut(s)	34, 670
BsiHKAI	GWGCWC	1 cut(s)	970
BsiSI	CCGG	1 cut(s)	1009
BslFI	GGGAC	1 cut(s)	876
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmFI	GGGAC	1 cut(s)	876
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	2 cut(s)	34, 670
Bsp1286I	GDGCHC	1 cut(s)	970
Bsp143I	GATC	4 cut(s)	4, 301, 436, 575
Bsp19I	CCATGG	1 cut(s)	332
BspACI	CCGC	3 cut(s)	253, 916, 986
BspANI	GGCC	2 cut(s)	34, 670
BspCNI	CTCAG	1 cut(s)	781
BspMI	ACCTGC	2 cut(s)	410, 1013
BspPI	GGATC	3 cut(s)	12, 444, 570
BsrBI	CCGCTC	1 cut(s)	916
BsrDI	GCAATG	3 cut(s)	207, 378, 510
BsrI	ACTGG	1 cut(s)	774
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	4 cut(s)	4, 301, 436, 575
BssT1I	CCWWGG	1 cut(s)	332
Bst4CI	ACNGT	5 cut(s)	277, 326, 546, 603, 901
Bst6I	CTCTTC	1 cut(s)	1007
BstBAI	YACGTR	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	2 cut(s)	695, 789
BstDSI	CCRYGG	1 cut(s)	332
BstF5I	GGATG	2 cut(s)	351, 509
BstHHI	GCGC	1 cut(s)	510
BstKTI	GATC	4 cut(s)	7, 304, 439, 578
BstMBI	GATC	4 cut(s)	4, 301, 436, 575
BstMWI	GCNNNNNNNGC	2 cut(s)	689, 913
BstNSI	RCATGY	1 cut(s)	163
BstSNI	TACGTA	1 cut(s)	178
BstV1I	GCAGC	3 cut(s)	274, 642, 714
BstX2I	RGATCY	2 cut(s)	436, 575
BstXI	CCANNNNNNTGG	2 cut(s)	46, 139
BstYI	RGATCY	2 cut(s)	436, 575
BsuRI	GGCC	2 cut(s)	34, 670
BtgI	CCRYGG	1 cut(s)	332
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	351, 509
BtsI	GCAGTG	1 cut(s)	981
BtsIMutI	CAGTG	2 cut(s)	322, 981
BveI	ACCTGC	2 cut(s)	410, 1013
Cac8I	GCNNGC	1 cut(s)	370
CaiI	CAGNNNCTG	2 cut(s)	737, 833
CfoI	GCGC	1 cut(s)	510
Cfr13I	GGNCC	1 cut(s)	1002
Csp6I	GTAC	2 cut(s)	535, 729
CviAII	CATG	5 cut(s)	67, 160, 333, 814, 938
CviQI	GTAC	2 cut(s)	535, 729
DdeI	CTNAG	2 cut(s)	695, 789
DpnI	GATC	4 cut(s)	6, 303, 438, 577
DpnII	GATC	4 cut(s)	4, 301, 436, 575
DraI	TTTAAA	2 cut(s)	220, 583
Eam1104I	CTCTTC	1 cut(s)	1007
EarI	CTCTTC	1 cut(s)	1007
Ecl136II	GAGCTC	1 cut(s)	968
Eco105I	TACGTA	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	332
Eco24I	GRGCYC	1 cut(s)	970
Eco47I	GGWCC	1 cut(s)	1002
Eco53kI	GAGCTC	1 cut(s)	968
Eco57I	CTGAAG	1 cut(s)	929
EcoICRI	GAGCTC	1 cut(s)	968
EcoO109I	RGGNCCY	1 cut(s)	1002
EcoT14I	CCWWGG	1 cut(s)	332
EcoT38I	GRGCYC	1 cut(s)	970
ErhI	CCWWGG	1 cut(s)	332
FaeI	CATG	5 cut(s)	70, 163, 336, 817, 941
FaqI	GGGAC	1 cut(s)	876
FatI	CATG	5 cut(s)	66, 159, 332, 813, 937
FauNDI	CATATG	1 cut(s)	134
FblI	GTMKAC	1 cut(s)	766
Fnu4HI	GCNGC	4 cut(s)	253, 288, 656, 703
FokI	GGATG	2 cut(s)	358, 516
FriOI	GRGCYC	1 cut(s)	970
Fsp4HI	GCNGC	4 cut(s)	253, 288, 656, 703
FspBI	CTAG	8 cut(s)	213, 246, 491, 539, 573, 707, 749, 857
GlaI	GCGC	1 cut(s)	509
GluI	GCNGC	4 cut(s)	253, 288, 656, 703
GsuI	CTGGAG	1 cut(s)	680
HaeIII	GGCC	2 cut(s)	34, 670
HapII	CCGG	1 cut(s)	1009
HhaI	GCGC	1 cut(s)	510
Hin1II	CATG	5 cut(s)	70, 163, 336, 817, 941
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HinfI	GANTC	6 cut(s)	122, 319, 455, 569, 647, 989
HpaII	CCGG	1 cut(s)	1009
Hpy166II	GTNNAC	1 cut(s)	767
Hpy188I	TCNGA	3 cut(s)	429, 646, 739
Hpy188III	TCNNGA	5 cut(s)	246, 440, 566, 573, 596
Hpy8I	GTNNAC	1 cut(s)	767
HpyAV	CCTTC	4 cut(s)	45, 139, 894, 904
HpyCH4III	ACNGT	5 cut(s)	277, 326, 546, 603, 901
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	3 cut(s)	98, 290, 702
HpyF10VI	GCNNNNNNNGC	2 cut(s)	689, 913
HpyF3I	CTNAG	2 cut(s)	695, 789
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	5 cut(s)	70, 163, 336, 817, 941
HspAI	GCGC	1 cut(s)	508
Kzo9I	GATC	4 cut(s)	4, 301, 436, 575
LmnI	GCTCC	2 cut(s)	635, 913
Lsp1109I	GCAGC	3 cut(s)	274, 642, 714
LweI	GCATC	1 cut(s)	743
MaeI	CTAG	8 cut(s)	213, 246, 491, 539, 573, 707, 749, 857
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	4 cut(s)	6, 303, 438, 577
MbiI	CCGCTC	1 cut(s)	916
MboI	GATC	4 cut(s)	4, 301, 436, 575
MboII	GAAGA	1 cut(s)	1024
MflI	RGATCY	2 cut(s)	436, 575
MhlI	GDGCHC	1 cut(s)	970
MluCI	AATT	7 cut(s)	196, 353, 423, 591, 614, 622, 717
MlyI	GAGTC	3 cut(s)	449, 563, 641
MmeI	TCCRAC	1 cut(s)	493
MnlI	CCTC	9 cut(s)	19, 272, 394, 423, 427, 487, 597, 962, 1014
MseI	TTAA	6 cut(s)	219, 393, 561, 582, 921, 957
MslI	CAYNNNNRTG	4 cut(s)	314, 502, 899, 936
MspI	CCGG	1 cut(s)	1009
Mva1269I	GAATGC	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	689, 913
NcoI	CCATGG	1 cut(s)	332
NdeI	CATATG	1 cut(s)	134
NdeII	GATC	4 cut(s)	4, 301, 436, 575
NlaIII	CATG	5 cut(s)	70, 163, 336, 817, 941
NspI	RCATGY	1 cut(s)	163
OliI	CACNNNNGTG	1 cut(s)	899
PaqCI	CACCTGC	1 cut(s)	410
PctI	GAATGC	1 cut(s)	225
PfeI	GAWTC	3 cut(s)	122, 319, 989
PflMI	CCANNNNNTGG	1 cut(s)	475
PkrI	GCNGC	4 cut(s)	254, 289, 657, 704
PleI	GAGTC	3 cut(s)	449, 563, 641
PpsI	GAGTC	3 cut(s)	449, 563, 641
Ppu21I	YACGTR	1 cut(s)	178
PpuMI	RGGWCCY	1 cut(s)	1002
PshBI	ATTAAT	1 cut(s)	561
Psp124BI	GAGCTC	1 cut(s)	970
Psp5II	RGGWCCY	1 cut(s)	1002
PspPI	GGNCC	1 cut(s)	1002
PspPPI	RGGWCCY	1 cut(s)	1002
PstNI	CAGNNNCTG	2 cut(s)	737, 833
PsuI	RGATCY	2 cut(s)	436, 575
RsaI	GTAC	2 cut(s)	536, 730
RsaNI	GTAC	2 cut(s)	535, 729
RseI	CAYNNNNRTG	4 cut(s)	314, 502, 899, 936
SacI	GAGCTC	1 cut(s)	970
SaqAI	TTAA	6 cut(s)	219, 393, 561, 582, 921, 957
SatI	GCNGC	4 cut(s)	253, 288, 656, 703
Sau3AI	GATC	4 cut(s)	4, 301, 436, 575
Sau96I	GGNCC	1 cut(s)	1002
SchI	GAGTC	3 cut(s)	449, 563, 641
SduI	GDGCHC	1 cut(s)	970
SfaNI	GCATC	1 cut(s)	743
SinI	GGWCC	1 cut(s)	1002
SmiMI	CAYNNNNRTG	4 cut(s)	314, 502, 899, 936
SnaBI	TACGTA	1 cut(s)	178
Sse9I	AATT	7 cut(s)	196, 353, 423, 591, 614, 622, 717
SsiI	CCGC	3 cut(s)	253, 916, 986
SspI	AATATT	1 cut(s)	341
SspMI	CTAG	8 cut(s)	213, 246, 491, 539, 573, 707, 749, 857
SstI	GAGCTC	1 cut(s)	970
StyI	CCWWGG	1 cut(s)	332
TaaI	ACNGT	5 cut(s)	277, 326, 546, 603, 901
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	1 cut(s)	650
TasI	AATT	7 cut(s)	196, 353, 423, 591, 614, 622, 717
TatI	WGTACW	1 cut(s)	728
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	3 cut(s)	122, 319, 989
Tru1I	TTAA	6 cut(s)	219, 393, 561, 582, 921, 957
Tru9I	TTAA	6 cut(s)	219, 393, 561, 582, 921, 957
TscAI	CASTG	2 cut(s)	329, 988
TseI	GCWGC	3 cut(s)	287, 655, 702
TspDTI	ATGAA	4 cut(s)	74, 135, 298, 332
TspRI	CASTG	2 cut(s)	329, 988
Van91I	CCANNNNNTGG	1 cut(s)	475
VpaK11BI	GGWCC	1 cut(s)	1002
VspI	ATTAAT	1 cut(s)	561
XapI	RAATTY	3 cut(s)	423, 591, 614
XbaI	TCTAGA	2 cut(s)	245, 572
XceI	RCATGY	1 cut(s)	163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	339
XmiI	GTMKAC	1 cut(s)	766
XspI	CTAG	8 cut(s)	213, 246, 491, 539, 573, 707, 749, 857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.