Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010700

Physical Location & Seq

Genomic Coordinates Forward (+)

981859 .. 984289

Gene Structure 2431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G03740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAGTTCTGGGGTGTTGAAGTTAAGAATGGCAAACCACTTCACCTAGATCCTGGGCTAGACAGGCTCGTGCACATCTCTCAGGTTGCTTTGGGAGAGAGTAAGAACAATGTAACCGAACCAATCCAGCTTTACGTGACTGTTGGATCGGATAAGCTTCTCATTGGAACGCTATCTCATGAGAAGTTTCCTCAGCTGTCTACGGAGATTGTCTTGGAAAGGAACTTTGCGCTGTCTCATACTTGGAAGAATGGGAGCGTTTTCTTCTCTGGTTACAAAGTTGATGCATCTGATCCCGAGCCTGAGGATTTGATTGATGATCAACTTGAGGCTGCTGGTTTCAAAGCTGCTCCGAAATCTGCTGCGAAACAGGTGAACTTTCAGTTGCCAAATGAAGATGTCAAAGCCAAGCAAGATGATGACGCTGACGGTAGTGAAGAAGATTCTTCAGATGATGATGATAGTGAAAACTCTGGAGACGAGGAGGAAGAGAAGGTTACTGCTGAATCTGACAGTGAGGAAGATGACTCATCAGACGACGAAGAAGATGACTCCTCAGAAGAGGAAACCCCAAAGAAGCCTGAAGAACCCAAGAAGAGGTCTGCAGAACCCAACTCCTCCAAGAACCCTGCGTCCAACAAGAAGGCTAAGTTTGTAACTCCTCAGAAAACAGATTCGAAGAAACCGCATGTCCATGTTGCAACTCCTCATCCCTCAAAACAGGCGGGTAAGAATTCTGGTGGAGGCAGCACTGGAGAGACATCGAAGCAGCAGCAGACACCGAAGTCTGCAGGAGCGTTTGGGTGCAAGTCGTGCACCAGAACCTTTACTTCGGAAATGGGATTGCAGTCTCACACAAAGGCCAAACACAGTGCAGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6 zf-met

Protein Analysis

294

Amino Acids

31.83

Weight (kDa)

4.77

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPL	PF17800	3 - 93	8.9e-16	Nucleoplasmin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03740
fragaria_vesca	FvH4_6g17790
malus_domestica	MD12G1017000.v1.1 MD14G1014900.v1.1
prunus_persica	Prupe.7G118500_v2.0.a1 Prupe.7G118500_v2.0.a1
pyrus_communis	pycom12g01380 pycom14g01240
rosa_chinensis	RchiOBHm_Chr3g0472041
rosa_laevigata	RLG00000024110
rosa_multiflora	Rmu_sc0002532.1_g000010
rosa_roxburghii	Rroxscaffold_6G00409300
rosa_rugosa	Rorug03G0121800
rosa_samantha	Rh3AG173400 Rh3AG173500 Rh3BG198900 Rh3CG190000 Rh3CG197400 Rh3DG175600
rosa_wichuraiana	Rw3G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	784
AccI	GTMKAC	1 cut(s)	200
AciI	CCGC	2 cut(s)	686, 725
AclWI	GGATC	3 cut(s)	44, 154, 287
AcsI	RAATTY	1 cut(s)	733
AcuI	CTGAAG	2 cut(s)	432, 603
AfiI	CCNNNNNNNGG	1 cut(s)	597
AgsI	TTSAA	2 cut(s)	20, 343
AjnI	CCWGG	1 cut(s)	52
AloI	GAACNNNNNNTCC	2 cut(s)	617, 649
AluBI	AGCT	5 cut(s)	130, 157, 196, 347, 878
AluI	AGCT	5 cut(s)	130, 157, 196, 347, 878
Alw21I	GWGCWC	2 cut(s)	75, 818
Alw26I	GTCTC	4 cut(s)	240, 471, 752, 855
Alw44I	GTGCAC	2 cut(s)	71, 814
AlwI	GGATC	3 cut(s)	44, 154, 287
Ama87I	CYCGRG	1 cut(s)	296
AoxI	GGCC	1 cut(s)	861
ApaLI	GTGCAC	2 cut(s)	71, 814
ApeKI	GCWGC	8 cut(s)	332, 347, 362, 747, 769, 772, 875, 878
ApoI	RAATTY	1 cut(s)	733
AspLEI	GCGC	1 cut(s)	232
AsuHPI	GGTGA	2 cut(s)	35, 385
AsuII	TTCGAA	1 cut(s)	677
AvaI	CYCGRG	1 cut(s)	296
AxyI	CCTNAGG	1 cut(s)	303
BaeGI	GKGCMC	2 cut(s)	75, 818
BauI	CACGAG	1 cut(s)	68
Bbv12I	GWGCWC	2 cut(s)	75, 818
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	7 cut(s)	319, 334, 349, 759, 781, 784, 865
BciT130I	CCWGG	1 cut(s)	54
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	4 cut(s)	240, 471, 752, 855
BfaI	CTAG	2 cut(s)	47, 59
BfmI	CTRYAG	2 cut(s)	603, 789
BisI	GCNGC	8 cut(s)	333, 348, 363, 748, 770, 773, 876, 879
BlsI	GCNGC	8 cut(s)	334, 349, 364, 749, 771, 774, 877, 880
Bme1390I	CCNGG	1 cut(s)	54
BmeT110I	CYCGRG	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	54
BmsI	GCATC	2 cut(s)	274, 296
BpmI	CTGGAG	2 cut(s)	495, 774
Bpu10I	CCTNAGC	1 cut(s)	192
Bpu14I	TTCGAA	1 cut(s)	677
BpuEI	CTTGAG	1 cut(s)	347
BsaAI	YACGTR	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	597
Bse1I	ACTGG	1 cut(s)	757
Bse21I	CCTNAGG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	53
BseGI	GGATG	1 cut(s)	709
BseLI	CCNNNNNNNGG	1 cut(s)	597
BseMII	CTCAG	5 cut(s)	95, 206, 294, 570, 677
BseNI	ACTGG	1 cut(s)	757
BseRI	GAGGAG	5 cut(s)	497, 544, 607, 651, 696
BseSI	GKGCMC	2 cut(s)	75, 818
BseXI	GCAGC	7 cut(s)	319, 334, 349, 759, 781, 784, 865
BshFI	GGCC	1 cut(s)	863
BsiHKAI	GWGCWC	2 cut(s)	75, 818
BsiHKCI	CYCGRG	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	597
BsmAI	GTCTC	4 cut(s)	240, 471, 752, 855
BsmBI	CGTCTC	1 cut(s)	471
BsnI	GGCC	1 cut(s)	863
BsoBI	CYCGRG	1 cut(s)	296
Bsp119I	TTCGAA	1 cut(s)	677
Bsp1286I	GDGCHC	2 cut(s)	75, 818
Bsp143I	GATC	4 cut(s)	49, 146, 292, 319
BspACI	CCGC	2 cut(s)	686, 725
BspANI	GGCC	1 cut(s)	863
BspCNI	CTCAG	5 cut(s)	94, 205, 295, 569, 676
BspHI	TCATGA	1 cut(s)	178
BspMAI	CTGCAG	2 cut(s)	607, 793
BspPI	GGATC	3 cut(s)	44, 154, 287
BspT104I	TTCGAA	1 cut(s)	677
BsrI	ACTGG	1 cut(s)	757
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	4 cut(s)	49, 146, 292, 319
BssSI	CACGAG	1 cut(s)	68
Bst2BI	CACGAG	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	4 cut(s)	142, 431, 515, 872
Bst6I	CTCTTC	3 cut(s)	483, 555, 590
BstAPI	GCANNNNNTGC	1 cut(s)	813
BstBAI	YACGTR	1 cut(s)	136
BstBI	TTCGAA	1 cut(s)	677
BstDEI	CTNAG	6 cut(s)	81, 192, 303, 556, 648, 663
BstF5I	GGATG	1 cut(s)	709
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	4 cut(s)	52, 149, 295, 322
BstMAI	GTCTC	4 cut(s)	240, 471, 752, 855
BstMBI	GATC	4 cut(s)	49, 146, 292, 319
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 813
BstNI	CCWGG	1 cut(s)	54
BstNSI	RCATGY	1 cut(s)	692
BstSCI	CCNGG	1 cut(s)	52
BstSFI	CTRYAG	2 cut(s)	603, 789
BstSLI	GKGCMC	2 cut(s)	75, 818
BstV1I	GCAGC	7 cut(s)	319, 334, 349, 759, 781, 784, 865
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	863
BtsCI	GGATG	1 cut(s)	709
BtsIMutI	CAGTG	3 cut(s)	520, 750, 877
CciI	TCATGA	1 cut(s)	178
CfoI	GCGC	1 cut(s)	232
CseI	GACGC	2 cut(s)	431, 621
CviAII	CATG	3 cut(s)	179, 689, 695
DdeI	CTNAG	6 cut(s)	81, 192, 303, 556, 648, 663
DpnI	GATC	4 cut(s)	51, 148, 294, 321
DpnII	GATC	4 cut(s)	49, 146, 292, 319
DrdI	GACNNNNNNGTC	1 cut(s)	784
DseDI	GACNNNNNNGTC	1 cut(s)	784
Eam1104I	CTCTTC	3 cut(s)	483, 555, 590
EarI	CTCTTC	3 cut(s)	483, 555, 590
Eco57I	CTGAAG	2 cut(s)	432, 603
Eco81I	CCTNAGG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	296
EcoRI	GAATTC	1 cut(s)	733
EcoRII	CCWGG	1 cut(s)	52
EcoT22I	ATGCAT	1 cut(s)	289
Esp3I	CGTCTC	1 cut(s)	471
FaeI	CATG	3 cut(s)	182, 692, 698
FaiI	YATR	4 cut(s)	180, 240, 690, 696
FatI	CATG	3 cut(s)	178, 688, 694
FauI	CCCGC	1 cut(s)	718
FbaI	TGATCA	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	200
Fnu4HI	GCNGC	8 cut(s)	333, 348, 363, 748, 770, 773, 876, 879
FokI	GGATG	1 cut(s)	696
Fsp4HI	GCNGC	8 cut(s)	333, 348, 363, 748, 770, 773, 876, 879
FspBI	CTAG	2 cut(s)	47, 59
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	8 cut(s)	333, 348, 363, 748, 770, 773, 876, 879
GsuI	CTGGAG	2 cut(s)	495, 774
HaeIII	GGCC	1 cut(s)	863
HgaI	GACGC	2 cut(s)	431, 621
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	3 cut(s)	182, 692, 698
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	5 cut(s)	443, 506, 527, 551, 674
HphI	GGTGA	2 cut(s)	35, 385
Hpy166II	GTNNAC	4 cut(s)	73, 201, 376, 816
Hpy188I	TCNGA	9 cut(s)	151, 292, 354, 451, 511, 535, 559, 666, 835
Hpy188III	TCNNGA	3 cut(s)	179, 296, 474
Hpy8I	GTNNAC	4 cut(s)	73, 201, 376, 816
Hpy99I	CGWCG	1 cut(s)	542
HpyAV	CCTTC	2 cut(s)	487, 637
HpyCH4III	ACNGT	4 cut(s)	142, 431, 515, 872
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	9 cut(s)	73, 287, 605, 701, 791, 807, 816, 847, 875
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 813
HpyF3I	CTNAG	6 cut(s)	81, 192, 303, 556, 648, 663
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	3 cut(s)	182, 692, 698
HspAI	GCGC	1 cut(s)	230
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	4 cut(s)	49, 146, 292, 319
LmnI	GCTCC	3 cut(s)	255, 355, 794
Lsp1109I	GCAGC	7 cut(s)	319, 334, 349, 759, 781, 784, 865
LweI	GCATC	2 cut(s)	274, 296
MaeI	CTAG	2 cut(s)	47, 59
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	5 cut(s)	112, 136, 272, 496, 655
MalI	GATC	4 cut(s)	51, 148, 294, 321
MboI	GATC	4 cut(s)	49, 146, 292, 319
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	2 cut(s)	75, 818
MluCI	AATT	1 cut(s)	733
MlyI	GAGTC	2 cut(s)	521, 545
MmeI	TCCRAC	2 cut(s)	124, 660
Mph1103I	ATGCAT	1 cut(s)	289
MseI	TTAA	1 cut(s)	24
MslI	CAYNNNNRTG	1 cut(s)	693
MspA1I	CMGCKG	2 cut(s)	196, 878
MspR9I	CCNGG	1 cut(s)	54
MvaI	CCWGG	1 cut(s)	54
MwoI	GCNNNNNNNGC	2 cut(s)	64, 813
NdeII	GATC	4 cut(s)	49, 146, 292, 319
NlaIII	CATG	3 cut(s)	182, 692, 698
NmuCI	GTSAC	1 cut(s)	136
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	1 cut(s)	692
NspV	TTCGAA	1 cut(s)	677
PagI	TCATGA	1 cut(s)	178
PfeI	GAWTC	3 cut(s)	443, 506, 674
PkrI	GCNGC	8 cut(s)	334, 349, 364, 749, 771, 774, 877, 880
PleI	GAGTC	2 cut(s)	521, 545
PpsI	GAGTC	2 cut(s)	521, 545
Ppu21I	YACGTR	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	52
PstI	CTGCAG	2 cut(s)	607, 793
PsuI	RGATCY	1 cut(s)	49
PvuII	CAGCTG	2 cut(s)	196, 878
RseI	CAYNNNNRTG	1 cut(s)	693
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	8 cut(s)	333, 348, 363, 748, 770, 773, 876, 879
Sau3AI	GATC	4 cut(s)	49, 146, 292, 319
SchI	GAGTC	2 cut(s)	521, 545
ScrFI	CCNGG	1 cut(s)	54
SduI	GDGCHC	2 cut(s)	75, 818
SfaNI	GCATC	2 cut(s)	274, 296
SfcI	CTRYAG	2 cut(s)	603, 789
SfuI	TTCGAA	1 cut(s)	677
SmiMI	CAYNNNNRTG	1 cut(s)	693
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	1 cut(s)	733
SsiI	CCGC	2 cut(s)	686, 725
SspMI	CTAG	2 cut(s)	47, 59
StyD4I	CCNGG	1 cut(s)	52
TaaI	ACNGT	4 cut(s)	142, 431, 515, 872
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	2 cut(s)	677, 764
TasI	AATT	1 cut(s)	733
TfiI	GAWTC	3 cut(s)	443, 506, 674
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	3 cut(s)	520, 757, 877
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	8 cut(s)	332, 347, 362, 747, 769, 772, 875, 878
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	408
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	3 cut(s)	520, 757, 877
VneI	GTGCAC	2 cut(s)	71, 814
XapI	RAATTY	1 cut(s)	733
XceI	RCATGY	1 cut(s)	692
XmiI	GTMKAC	1 cut(s)	200
XspI	CTAG	2 cut(s)	47, 59
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.