Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010700

Physical Location & Seq

Genomic Coordinates Reverse (-)

1296467 .. 1300281

Gene Structure 3815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1014900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGACGTTTCACGTTAAATGGTGTGTCTTACATGTTACTTGTTCTCAGATTACTTTCTTGAACATTGAATTTTTTGTTAAATCCTTGACTGCTATGTTTTGTCTTCACTATTGTGGAGTCTGGATGATGCACCACCTATTAGGGCACCTACTCTGGTTGATAAGGGTTAATGTTACTGAGGTAGCTAAGAAGCCTATTAAATCTGAGCAAAAGGAAGCTAGTAGCGATGATGATGATGAGTTTGTTGGTCATCAGGCCTTGGCTGAGGGAGATAGCAGTAAAGATTTTGACGAAAGTGATGATGATTCTGACAGTGACGATGACAGTGAAGAGGATGAAGAAACTCCGAAGAAGGCTGATGTTGGCAAGAAGCGACCTGCTGAATCTTCTAAAACACCTGCTAATGACAAGAAGCCAAAGTTTGTTACTCCTGAAAAGATTGGTAGCAGGAAGGGCAGCGTCCACACAGCAACTCCACACCCTTCAAAGCAGACTGGGAAAAAACCAGCTACGTCCGACCAGTCAAAGCAGCAGGCTCCTAAATCAAGCGGTGCATTCCATTGCCAACCCTGCAACAGGTCGTTTAACTCGGATGGTGCATTGCAAAGCCATACAAAGGCAAAGCACAGTGCTGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6 zf-met

Protein Analysis

214

Amino Acids

23.6

Weight (kDa)

6.45

Isoelectric Point (pI)

52.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03740
fragaria_vesca	FvH4_6g17790
malus_domestica	MD12G1017000.v1.1 MD14G1014900.v1.1
prunus_persica	Prupe.7G118500_v2.0.a1 Prupe.7G118500_v2.0.a1
pyrus_communis	pycom12g01380 pycom14g01240
rosa_chinensis	RchiOBHm_Chr3g0472041
rosa_laevigata	RLG00000024110
rosa_multiflora	Rmu_sc0002532.1_g000010
rosa_roxburghii	Rroxscaffold_6G00409300
rosa_rugosa	Rorug03G0121800
rosa_samantha	Rh3AG173400 Rh3AG173500 Rh3BG198900 Rh3CG190000 Rh3CG197400 Rh3DG175600
rosa_wichuraiana	Rw3G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	406
Acc36I	ACCTGC	2 cut(s)	385, 406
AccB1I	GGYRCC	1 cut(s)	144
AciI	CCGC	1 cut(s)	549
AcsI	RAATTY	1 cut(s)	68
AfiI	CCNNNNNNNGG	2 cut(s)	576, 616
AflIII	ACRYGT	1 cut(s)	31
AgsI	TTSAA	3 cut(s)	61, 68, 486
AleI	CACNNNNGTG	1 cut(s)	111
AluBI	AGCT	3 cut(s)	185, 218, 509
AluI	AGCT	3 cut(s)	185, 218, 509
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	3 cut(s)	456, 529, 632
ApoI	RAATTY	1 cut(s)	68
BaeGI	GKGCMC	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	95
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	3 cut(s)	468, 541, 619
BccI	CCATC	1 cut(s)	587
BfaI	CTAG	1 cut(s)	219
BfuAI	ACCTGC	2 cut(s)	385, 406
BisI	GCNGC	3 cut(s)	457, 530, 633
BlsI	GCNGC	3 cut(s)	458, 531, 634
BmiI	GGNNCC	2 cut(s)	146, 537
BmrI	ACTGGG	1 cut(s)	504
BmsI	GCATC	1 cut(s)	117
BmuI	ACTGGG	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	95
Bpu10I	CCTNAGC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	258
BsaXI	ACNNNNNCTCC	2 cut(s)	457, 487
Bsc4I	CCNNNNNNNGG	2 cut(s)	576, 616
Bse1I	ACTGG	2 cut(s)	499, 520
Bse3DI	GCAATG	2 cut(s)	559, 599
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	3 cut(s)	129, 340, 598
BseLI	CCNNNNNNNGG	2 cut(s)	576, 616
BseMI	GCAATG	2 cut(s)	559, 599
BseMII	CTCAG	4 cut(s)	59, 168, 195, 255
BseNI	ACTGG	2 cut(s)	499, 520
BseSI	GKGCMC	1 cut(s)	147
BseXI	GCAGC	3 cut(s)	468, 541, 619
BshFI	GGCC	1 cut(s)	257
BshNI	GGYRCC	1 cut(s)	144
BslI	CCNNNNNNNGG	2 cut(s)	576, 616
BsmI	GAATGC	1 cut(s)	554
BsnI	GGCC	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	147
BspACI	CCGC	1 cut(s)	549
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	4 cut(s)	58, 169, 196, 256
BspLI	GGNNCC	2 cut(s)	146, 537
BspMI	ACCTGC	2 cut(s)	385, 406
BspT107I	GGYRCC	1 cut(s)	144
BsrDI	GCAATG	2 cut(s)	559, 599
BsrI	ACTGG	2 cut(s)	499, 520
BssECI	CCNNGG	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	3 cut(s)	314, 326, 629
Bst6I	CTCTTC	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	5 cut(s)	45, 177, 186, 204, 264
BstENI	CCTNNNNNAGG	1 cut(s)	574
BstF5I	GGATG	3 cut(s)	129, 340, 598
BstMWI	GCNNNNNNNGC	2 cut(s)	453, 570
BstNSI	RCATGY	1 cut(s)	35
BstSLI	GKGCMC	1 cut(s)	147
BstV1I	GCAGC	3 cut(s)	468, 541, 619
BstV2I	GAAGAC	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	257
BtgZI	GCGATG	1 cut(s)	240
BtsCI	GGATG	3 cut(s)	129, 340, 598
BtsIMutI	CAGTG	3 cut(s)	319, 331, 634
BveI	ACCTGC	2 cut(s)	385, 406
Cac8I	GCNNGC	1 cut(s)	534
CseI	GACGC	1 cut(s)	448
CviAII	CATG	1 cut(s)	32
DdeI	CTNAG	5 cut(s)	45, 177, 186, 204, 264
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	258
Eco147I	AGGCCT	1 cut(s)	257
EcoNI	CCTNNNNNAGG	1 cut(s)	574
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	1 cut(s)	35
FaiI	YATR	3 cut(s)	33, 95, 612
FatI	CATG	1 cut(s)	31
Fnu4HI	GCNGC	3 cut(s)	457, 530, 633
FokI	GGATG	3 cut(s)	136, 347, 605
Fsp4HI	GCNGC	3 cut(s)	457, 530, 633
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	3 cut(s)	457, 530, 633
HaeIII	GGCC	1 cut(s)	257
HgaI	GACGC	1 cut(s)	448
Hin1II	CATG	1 cut(s)	35
HinfI	GANTC	3 cut(s)	117, 305, 383
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	6 cut(s)	48, 205, 310, 348, 517, 592
Hpy188III	TCNNGA	3 cut(s)	58, 121, 431
Hpy8I	GTNNAC	1 cut(s)	463
HpyAV	CCTTC	3 cut(s)	346, 445, 492
HpyCH4III	ACNGT	3 cut(s)	314, 326, 629
HpyCH4IV	ACGT	3 cut(s)	5, 12, 512
HpyCH4V	TGCA	6 cut(s)	130, 554, 573, 599, 604, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	453, 570
HpyF3I	CTNAG	5 cut(s)	45, 177, 186, 204, 264
HpySE526I	ACGT	3 cut(s)	5, 12, 512
Hsp92II	CATG	1 cut(s)	35
LmnI	GCTCC	1 cut(s)	541
Lsp1109I	GCAGC	3 cut(s)	468, 541, 619
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	3 cut(s)	5, 12, 512
MaeIII	GTNAC	4 cut(s)	34, 172, 314, 424
MboII	GAAGA	5 cut(s)	95, 341, 350, 361, 378
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	540
MnlI	CCTC	3 cut(s)	172, 259, 325
MseI	TTAA	5 cut(s)	15, 78, 168, 198, 585
MslI	CAYNNNNRTG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	554
MwoI	GCNNNNNNNGC	2 cut(s)	453, 570
NlaIII	CATG	1 cut(s)	35
NlaIV	GGNNCC	2 cut(s)	146, 537
NmuCI	GTSAC	1 cut(s)	314
NspI	RCATGY	1 cut(s)	35
OliI	CACNNNNGTG	1 cut(s)	111
PaqCI	CACCTGC	1 cut(s)	406
PceI	AGGCCT	1 cut(s)	257
PciI	ACATGT	1 cut(s)	31
PctI	GAATGC	1 cut(s)	554
PfeI	GAWTC	2 cut(s)	305, 383
PkrI	GCNGC	3 cut(s)	458, 531, 634
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PscI	ACATGT	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	146, 537
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	5 cut(s)	15, 78, 168, 198, 585
SatI	GCNGC	3 cut(s)	457, 530, 633
SchI	GAGTC	1 cut(s)	126
SduI	GDGCHC	1 cut(s)	147
SfaNI	GCATC	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	1 cut(s)	68
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	1 cut(s)	549
SspMI	CTAG	1 cut(s)	219
StuI	AGGCCT	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	3 cut(s)	314, 326, 629
TaiI	ACGT	3 cut(s)	8, 15, 515
TasI	AATT	1 cut(s)	68
TfiI	GAWTC	2 cut(s)	305, 383
Tru1I	TTAA	5 cut(s)	15, 78, 168, 198, 585
Tru9I	TTAA	5 cut(s)	15, 78, 168, 198, 585
TscAI	CASTG	3 cut(s)	319, 331, 634
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	3 cut(s)	456, 529, 632
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	1 cut(s)	351
TspRI	CASTG	3 cut(s)	319, 331, 634
XagI	CCTNNNNNAGG	1 cut(s)	574
XapI	RAATTY	1 cut(s)	68
XceI	RCATGY	1 cut(s)	35
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.