Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0010700

Physical Location & Seq

Genomic Coordinates Reverse (-)

879322 .. 883164

Gene Structure 3843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g01240.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTGTAACGTTCTCACTCTTCATCTCACTGTTAAAACAAGAATTATTTCAGTGATTAAAATTGTCACCGCAAATTATAAATTGAAAATTCCGCAAAGCCTTGTAGAAAACCTAGCACTAGCAAGCAATGGAGTTTTGGGGTTGAAGGTGCTATGGTGCTATGGTGCTGAGGTAAAAAGTGGTCAGTCTCTTGTTGTCGATCCTGGTGAAAAGCTCCTGCATCTTTCGCAGGCTTGTCTGGATGACCTTAAGAAAGCGAAGGGAAGCGATTCTATTTCACTCTTCGCGAAAGTTGGCGATCTGAAGCTTGTTCTTGGGTTTCTTTCTGCTGAGAAATCCCCTCAGTTAATGTTTGATATTGTGTTTGATGAGAAATTTGAGCTATCCCATAACTGGAAAAATGGGAGCGTCCACTTCACTGGATATAAGTCTTTTGTGGAGTCTGATTCTGAAGAGGAGGATGCACCACCTATTAGGGCACCTACTCTGGTTGATAAGGGAAAAGCAAAGGTTAATGGTACTGAGGTAGCTAAGAAACCTATTAAATCTGAGCAAAAGGAAGCTAGTAGCGATGATGAAGATGAATCTGATGATGAAGAGTTTGTTGGTCATCCGGCCTTGGCTGAGGCAGATGGCAGTAAAGATTTTGACAAAAGCGATGATGATTCTGACAGTGACGATGACAGTGATGACAGTGAAGAGGATGAAGAGACTCCGAAGAAGGCTGATGTTGGCAAGAAGCGACCTGCTGAATCTTCTAAAACACCTGCTAATGACAAGAAGCCAAAGTTTGTTACTCCTGAAAAGATTGGTAGCAAGAAAGGCAGCGTCCACACAGCAACTCCACACCCTTCAAAGCAGACTGGGAAAAAACCAGCTACGTCCGACCAGTCAAAGCAGCAGGCTCCTAAATTAGGCGGTGCATTCCATTGCCAACCCTGCAACAGGTCGTTTAACTCGGATGGTGCATTGCAAAGCCATACAAAGGCAAAGCACAGTGCTGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6 zf-met

Protein Analysis

337

Amino Acids

36.36

Weight (kDa)

5.75

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03740
fragaria_vesca	FvH4_6g17790
malus_domestica	MD12G1017000.v1.1 MD14G1014900.v1.1
prunus_persica	Prupe.7G118500_v2.0.a1 Prupe.7G118500_v2.0.a1
pyrus_communis	pycom12g01380 pycom14g01240
rosa_chinensis	RchiOBHm_Chr3g0472041
rosa_laevigata	RLG00000024110
rosa_multiflora	Rmu_sc0002532.1_g000010
rosa_roxburghii	Rroxscaffold_6G00409300
rosa_rugosa	Rorug03G0121800
rosa_samantha	Rh3AG173400 Rh3AG173500 Rh3BG198900 Rh3CG190000 Rh3CG197400 Rh3DG175600
rosa_wichuraiana	Rw3G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	78
AarI	CACCTGC	1 cut(s)	775
Acc36I	ACCTGC	2 cut(s)	754, 775
AccB1I	GGYRCC	1 cut(s)	478
AccII	CGCG	1 cut(s)	287
AciI	CCGC	3 cut(s)	69, 92, 918
AclI	AACGTT	1 cut(s)	9
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	2 cut(s)	87, 374
AcuI	CTGAAG	2 cut(s)	323, 471
AfaI	GTAC	1 cut(s)	520
AfiI	CCNNNNNNNGG	4 cut(s)	393, 914, 945, 985
AflII	CTTAAG	1 cut(s)	248
AgsI	TTSAA	3 cut(s)	85, 145, 855
AjnI	CCWGG	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	2 cut(s)	588, 620
AluBI	AGCT	6 cut(s)	214, 307, 382, 530, 563, 878
AluI	AGCT	6 cut(s)	214, 307, 382, 530, 563, 878
Alw26I	GTCTC	2 cut(s)	192, 704
AlwI	GGATC	1 cut(s)	194
AoxI	GGCC	1 cut(s)	615
ApeKI	GCWGC	3 cut(s)	825, 898, 1001
ApoI	RAATTY	2 cut(s)	87, 374
Asp700I	GAANNNNTTC	2 cut(s)	46, 268
AsuHPI	GGTGA	2 cut(s)	58, 218
BaeGI	GKGCMC	1 cut(s)	481
BaeI	ACNNNNGTAYC	2 cut(s)	510, 543
BanI	GGYRCC	1 cut(s)	478
BbvCI	CCTCAGC	2 cut(s)	168, 624
BbvI	GCAGC	3 cut(s)	837, 910, 988
BccI	CCATC	2 cut(s)	626, 956
BciT130I	CCWGG	1 cut(s)	204
BcoDI	GTCTC	2 cut(s)	192, 704
BfaI	CTAG	3 cut(s)	113, 119, 564
BfrI	CTTAAG	1 cut(s)	248
BfuAI	ACCTGC	2 cut(s)	754, 775
BisI	GCNGC	3 cut(s)	826, 899, 1002
BlsI	GCNGC	3 cut(s)	827, 900, 1003
Bme1390I	CCNGG	1 cut(s)	204
BmiI	GGNNCC	2 cut(s)	480, 906
BmrFI	CCNGG	1 cut(s)	204
BmrI	ACTGGG	1 cut(s)	873
BmsI	GCATC	2 cut(s)	229, 451
BmuI	ACTGGG	1 cut(s)	873
Bpu10I	CCTNAGC	2 cut(s)	168, 624
BsaJI	CCNNGG	1 cut(s)	618
BsaXI	ACNNNNNCTCC	2 cut(s)	826, 856
Bsc4I	CCNNNNNNNGG	4 cut(s)	393, 914, 945, 985
Bse1I	ACTGG	4 cut(s)	398, 424, 868, 889
Bse3DI	GCAATG	3 cut(s)	133, 928, 968
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	618
BseGI	GGATG	5 cut(s)	247, 466, 610, 709, 967
BseLI	CCNNNNNNNGG	4 cut(s)	393, 914, 945, 985
BseMI	GCAATG	3 cut(s)	133, 928, 968
BseMII	CTCAG	6 cut(s)	159, 321, 356, 513, 540, 615
BseNI	ACTGG	4 cut(s)	398, 424, 868, 889
BseRI	GAGGAG	1 cut(s)	470
BseSI	GKGCMC	1 cut(s)	481
BseXI	GCAGC	3 cut(s)	837, 910, 988
Bsh1236I	CGCG	1 cut(s)	287
BshFI	GGCC	1 cut(s)	617
BshNI	GGYRCC	1 cut(s)	478
BsiSI	CCGG	1 cut(s)	614
BslI	CCNNNNNNNGG	4 cut(s)	393, 914, 945, 985
BsmAI	GTCTC	2 cut(s)	192, 704
BsmI	GAATGC	1 cut(s)	923
BsnI	GGCC	1 cut(s)	617
Bsp1286I	GDGCHC	1 cut(s)	481
Bsp143I	GATC	2 cut(s)	199, 298
Bsp68I	TCGCGA	1 cut(s)	287
BspACI	CCGC	3 cut(s)	69, 92, 918
BspANI	GGCC	1 cut(s)	617
BspCNI	CTCAG	6 cut(s)	160, 322, 355, 514, 541, 616
BspFNI	CGCG	1 cut(s)	287
BspLI	GGNNCC	2 cut(s)	480, 906
BspMI	ACCTGC	2 cut(s)	754, 775
BspPI	GGATC	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	478
BspTI	CTTAAG	1 cut(s)	248
BsrDI	GCAATG	3 cut(s)	133, 928, 968
BsrI	ACTGG	4 cut(s)	398, 424, 868, 889
BssECI	CCNNGG	1 cut(s)	618
BssMI	GATC	2 cut(s)	199, 298
BssT1I	CCWWGG	1 cut(s)	618
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	5 cut(s)	31, 674, 686, 695, 998
Bst6I	CTCTTC	6 cut(s)	24, 287, 447, 591, 693, 702
BstAFI	CTTAAG	1 cut(s)	248
BstC8I	GCNNGC	3 cut(s)	124, 231, 903
BstDEI	CTNAG	7 cut(s)	168, 330, 342, 522, 531, 549, 624
BstENI	CCTNNNNNAGG	2 cut(s)	912, 943
BstF5I	GGATG	5 cut(s)	247, 466, 610, 709, 967
BstFNI	CGCG	1 cut(s)	287
BstKTI	GATC	2 cut(s)	202, 301
BstMAI	GTCTC	2 cut(s)	192, 704
BstMBI	GATC	2 cut(s)	199, 298
BstMWI	GCNNNNNNNGC	3 cut(s)	226, 822, 939
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BstSLI	GKGCMC	1 cut(s)	481
BstUI	CGCG	1 cut(s)	287
BstV1I	GCAGC	3 cut(s)	837, 910, 988
BstXI	CCANNNNNNTGG	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	617
BtgZI	GCGATG	2 cut(s)	585, 672
BtsCI	GGATG	5 cut(s)	247, 466, 610, 709, 967
BtsIMutI	CAGTG	7 cut(s)	27, 57, 417, 679, 691, 700, 1003
BtuMI	TCGCGA	1 cut(s)	287
BveI	ACCTGC	2 cut(s)	754, 775
Cac8I	GCNNGC	3 cut(s)	124, 231, 903
CseI	GACGC	2 cut(s)	397, 817
Csp6I	GTAC	1 cut(s)	519
CviQI	GTAC	1 cut(s)	519
DdeI	CTNAG	7 cut(s)	168, 330, 342, 522, 531, 549, 624
DpnI	GATC	2 cut(s)	201, 300
DpnII	GATC	2 cut(s)	199, 298
Eam1104I	CTCTTC	6 cut(s)	24, 287, 447, 591, 693, 702
EarI	CTCTTC	6 cut(s)	24, 287, 447, 591, 693, 702
Eco130I	CCWWGG	1 cut(s)	618
Eco57I	CTGAAG	2 cut(s)	323, 471
EcoNI	CCTNNNNNAGG	2 cut(s)	912, 943
EcoRII	CCWGG	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	618
ErhI	CCWWGG	1 cut(s)	618
FaiI	YATR	6 cut(s)	78, 154, 162, 390, 426, 981
Fnu4HI	GCNGC	3 cut(s)	826, 899, 1002
FokI	GGATG	5 cut(s)	254, 473, 597, 716, 974
Fsp4HI	GCNGC	3 cut(s)	826, 899, 1002
FspBI	CTAG	3 cut(s)	113, 119, 564
GluI	GCNGC	3 cut(s)	826, 899, 1002
HaeIII	GGCC	1 cut(s)	617
HapII	CCGG	1 cut(s)	614
HgaI	GACGC	2 cut(s)	397, 817
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	7 cut(s)	269, 440, 446, 584, 665, 712, 752
HpaII	CCGG	1 cut(s)	614
HphI	GGTGA	2 cut(s)	58, 218
Hpy166II	GTNNAC	2 cut(s)	412, 832
Hpy188I	TCNGA	9 cut(s)	303, 445, 451, 550, 589, 670, 717, 886, 961
Hpy188III	TCNNGA	3 cut(s)	239, 286, 800
Hpy8I	GTNNAC	2 cut(s)	412, 832
HpyAV	CCTTC	4 cut(s)	139, 253, 715, 861
HpyCH4III	ACNGT	5 cut(s)	31, 674, 686, 695, 998
HpyCH4IV	ACGT	2 cut(s)	9, 881
HpyCH4V	TGCA	7 cut(s)	220, 464, 923, 942, 968, 973, 1004
HpyF10VI	GCNNNNNNNGC	3 cut(s)	226, 822, 939
HpyF3I	CTNAG	7 cut(s)	168, 330, 342, 522, 531, 549, 624
HpySE526I	ACGT	2 cut(s)	9, 881
Kzo9I	GATC	2 cut(s)	199, 298
LmnI	GCTCC	3 cut(s)	219, 405, 910
Lsp1109I	GCAGC	3 cut(s)	837, 910, 988
LweI	GCATC	2 cut(s)	229, 451
MaeI	CTAG	3 cut(s)	113, 119, 564
MaeII	ACGT	2 cut(s)	9, 881
MaeIII	GTNAC	4 cut(s)	5, 64, 674, 793
MalI	GATC	2 cut(s)	201, 300
MboI	GATC	2 cut(s)	199, 298
MboII	GAAGA	9 cut(s)	11, 274, 464, 590, 608, 710, 719, 730, 747
MhlI	GDGCHC	1 cut(s)	481
MluCI	AATT	7 cut(s)	42, 60, 73, 80, 87, 374, 911
MlyI	GAGTC	2 cut(s)	449, 706
MmeI	TCCRAC	1 cut(s)	909
MnlI	CCTC	7 cut(s)	163, 351, 448, 451, 517, 619, 694
MroXI	GAANNNNTTC	2 cut(s)	46, 268
MseI	TTAA	7 cut(s)	33, 57, 249, 347, 513, 543, 954
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	1 cut(s)	614
MspR9I	CCNGG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	923
MvaI	CCWGG	1 cut(s)	204
MvnI	CGCG	1 cut(s)	287
MwoI	GCNNNNNNNGC	3 cut(s)	226, 822, 939
NdeII	GATC	2 cut(s)	199, 298
NlaIV	GGNNCC	2 cut(s)	480, 906
NmuCI	GTSAC	2 cut(s)	64, 674
NruI	TCGCGA	1 cut(s)	287
PaqCI	CACCTGC	1 cut(s)	775
PctI	GAATGC	1 cut(s)	923
PdmI	GAANNNNTTC	2 cut(s)	46, 268
PfeI	GAWTC	5 cut(s)	269, 446, 584, 665, 752
PkrI	GCNGC	3 cut(s)	827, 900, 1003
PleI	GAGTC	2 cut(s)	448, 706
PpsI	GAGTC	2 cut(s)	448, 706
PsiI	TTATAA	1 cut(s)	78
Psp1406I	AACGTT	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	480, 906
RruI	TCGCGA	1 cut(s)	287
RsaI	GTAC	1 cut(s)	520
RsaNI	GTAC	1 cut(s)	519
SaqAI	TTAA	7 cut(s)	33, 57, 249, 347, 513, 543, 954
SatI	GCNGC	3 cut(s)	826, 899, 1002
Sau3AI	GATC	2 cut(s)	199, 298
SchI	GAGTC	2 cut(s)	449, 706
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	1 cut(s)	481
SfaNI	GCATC	2 cut(s)	229, 451
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	7 cut(s)	42, 60, 73, 80, 87, 374, 911
SsiI	CCGC	3 cut(s)	69, 92, 918
SspMI	CTAG	3 cut(s)	113, 119, 564
StyD4I	CCNGG	1 cut(s)	202
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	5 cut(s)	31, 674, 686, 695, 998
TaiI	ACGT	2 cut(s)	12, 884
TaqI	TCGA	1 cut(s)	198
TasI	AATT	7 cut(s)	42, 60, 73, 80, 87, 374, 911
TfiI	GAWTC	5 cut(s)	269, 446, 584, 665, 752
Tru1I	TTAA	7 cut(s)	33, 57, 249, 347, 513, 543, 954
Tru9I	TTAA	7 cut(s)	33, 57, 249, 347, 513, 543, 954
TscAI	CASTG	7 cut(s)	34, 57, 424, 679, 691, 700, 1003
TseFI	GTSAC	2 cut(s)	64, 674
TseI	GCWGC	3 cut(s)	825, 898, 1001
Tsp45I	GTSAC	2 cut(s)	64, 674
TspDTI	ATGAA	5 cut(s)	11, 591, 597, 609, 720
TspRI	CASTG	7 cut(s)	34, 57, 424, 679, 691, 700, 1003
Vha464I	CTTAAG	1 cut(s)	248
XagI	CCTNNNNNAGG	2 cut(s)	912, 943
XapI	RAATTY	2 cut(s)	87, 374
XmnI	GAANNNNTTC	2 cut(s)	46, 268
XspI	CTAG	3 cut(s)	113, 119, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.