histone deacetylase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G03740 |
| fragaria_vesca | FvH4_6g17790 |
| malus_domestica | MD12G1017000.v1.1 MD14G1014900.v1.1 |
| prunus_persica | Prupe.7G118500_v2.0.a1 Prupe.7G118500_v2.0.a1 |
| pyrus_communis | pycom12g01380 pycom14g01240 |
| rosa_chinensis | RchiOBHm_Chr3g0472041 |
| rosa_laevigata | RLG00000024110 |
| rosa_multiflora | Rmu_sc0002532.1_g000010 |
| rosa_roxburghii | Rroxscaffold_6G00409300 |
| rosa_rugosa | Rorug03G0121800 |
| rosa_samantha | Rh3AG173400 Rh3AG173500 Rh3BG198900 Rh3CG190000 Rh3CG197400 Rh3DG175600 |
| rosa_wichuraiana | Rw3G016710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 346 |
| AciI | CCGC | 1 cut(s) | 501 |
| AclWI | GGATC | 1 cut(s) | 38 |
| AcuI | CTGAAG | 1 cut(s) | 339 |
| AfaI | GTAC | 3 cut(s) | 225, 388, 597 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 128 |
| AflII | CTTAAG | 1 cut(s) | 23 |
| AluBI | AGCT | 3 cut(s) | 82, 398, 431 |
| AluI | AGCT | 3 cut(s) | 82, 398, 431 |
| Alw26I | GTCTC | 1 cut(s) | 569 |
| AlwI | GGATC | 1 cut(s) | 38 |
| AsuHPI | GGTGA | 4 cut(s) | 391, 485, 515, 601 |
| BaeGI | GKGCMC | 1 cut(s) | 349 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 378, 411 |
| BanI | GGYRCC | 1 cut(s) | 346 |
| BciVI | GTATCC | 1 cut(s) | 151 |
| BclI | TGATCA | 1 cut(s) | 475 |
| BcoDI | GTCTC | 1 cut(s) | 569 |
| BfaI | CTAG | 2 cut(s) | 408, 432 |
| BfrI | CTTAAG | 1 cut(s) | 23 |
| BfuI | GTATCC | 1 cut(s) | 151 |
| BmcAI | AGTACT | 1 cut(s) | 597 |
| BmiI | GGNNCC | 1 cut(s) | 348 |
| BmsI | GCATC | 1 cut(s) | 319 |
| Bpu10I | CCTNAGC | 1 cut(s) | 489 |
| BsaJI | CCNNGG | 2 cut(s) | 88, 483 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 128 |
| Bse1I | ACTGG | 2 cut(s) | 133, 159 |
| BseDI | CCNNGG | 2 cut(s) | 88, 483 |
| BseGI | GGATG | 2 cut(s) | 334, 574 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 128 |
| BseMII | CTCAG | 2 cut(s) | 381, 408 |
| BseNI | ACTGG | 2 cut(s) | 133, 159 |
| BseRI | GAGGAG | 2 cut(s) | 320, 338 |
| BseSI | GKGCMC | 1 cut(s) | 349 |
| BshNI | GGYRCC | 1 cut(s) | 346 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 128 |
| BsmAI | GTCTC | 1 cut(s) | 569 |
| Bsp1286I | GDGCHC | 1 cut(s) | 349 |
| Bsp143I | GATC | 3 cut(s) | 43, 249, 475 |
| BspACI | CCGC | 1 cut(s) | 501 |
| BspCNI | CTCAG | 2 cut(s) | 382, 409 |
| BspLI | GGNNCC | 1 cut(s) | 348 |
| BspPI | GGATC | 1 cut(s) | 38 |
| BspT107I | GGYRCC | 1 cut(s) | 346 |
| BspTI | CTTAAG | 1 cut(s) | 23 |
| BsrI | ACTGG | 2 cut(s) | 133, 159 |
| BssECI | CCNNGG | 2 cut(s) | 88, 483 |
| BssMI | GATC | 3 cut(s) | 43, 249, 475 |
| BssT1I | CCWWGG | 2 cut(s) | 88, 483 |
| Bst4CI | ACNGT | 2 cut(s) | 280, 560 |
| Bst6I | CTCTTC | 3 cut(s) | 315, 459, 567 |
| BstAFI | CTTAAG | 1 cut(s) | 23 |
| BstC8I | GCNNGC | 1 cut(s) | 84 |
| BstDEI | CTNAG | 5 cut(s) | 390, 399, 417, 489, 683 |
| BstF5I | GGATG | 2 cut(s) | 334, 574 |
| BstKTI | GATC | 3 cut(s) | 46, 252, 478 |
| BstMAI | GTCTC | 1 cut(s) | 569 |
| BstMBI | GATC | 3 cut(s) | 43, 249, 475 |
| BstSLI | GKGCMC | 1 cut(s) | 349 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 154 |
| BsuI | GTATCC | 1 cut(s) | 151 |
| BtgZI | GCGATG | 1 cut(s) | 453 |
| BtsCI | GGATG | 2 cut(s) | 334, 574 |
| BtsIMutI | CAGTG | 2 cut(s) | 152, 565 |
| Cac8I | GCNNGC | 1 cut(s) | 84 |
| CseI | GACGC | 1 cut(s) | 132 |
| Csp6I | GTAC | 3 cut(s) | 224, 387, 596 |
| CviAII | CATG | 1 cut(s) | 198 |
| CviJI | RGCY | 6 cut(s) | 82, 398, 431, 481, 488, 717 |
| CviKI_1 | RGCY | 6 cut(s) | 82, 398, 431, 481, 488, 717 |
| CviQI | GTAC | 3 cut(s) | 224, 387, 596 |
| DdeI | CTNAG | 5 cut(s) | 390, 399, 417, 489, 683 |
| DpnI | GATC | 3 cut(s) | 45, 251, 477 |
| DpnII | GATC | 3 cut(s) | 43, 249, 475 |
| DraI | TTTAAA | 1 cut(s) | 204 |
| Eam1104I | CTCTTC | 3 cut(s) | 315, 459, 567 |
| EarI | CTCTTC | 3 cut(s) | 315, 459, 567 |
| Eco130I | CCWWGG | 2 cut(s) | 88, 483 |
| Eco32I | GATATC | 1 cut(s) | 175 |
| Eco57I | CTGAAG | 1 cut(s) | 339 |
| EcoRV | GATATC | 1 cut(s) | 175 |
| EcoT14I | CCWWGG | 2 cut(s) | 88, 483 |
| ErhI | CCWWGG | 2 cut(s) | 88, 483 |
| FaeI | CATG | 1 cut(s) | 201 |
| FaiI | YATR | 6 cut(s) | 125, 199, 237, 286, 413, 643 |
| FatI | CATG | 1 cut(s) | 197 |
| FbaI | TGATCA | 1 cut(s) | 475 |
| FokI | GGATG | 2 cut(s) | 341, 581 |
| FspBI | CTAG | 2 cut(s) | 408, 432 |
| HgaI | GACGC | 1 cut(s) | 132 |
| Hin1II | CATG | 1 cut(s) | 201 |
| HindIII | AAGCTT | 1 cut(s) | 80 |
| HinfI | GANTC | 5 cut(s) | 308, 314, 452, 530, 577 |
| HphI | GGTGA | 4 cut(s) | 391, 485, 515, 601 |
| Hpy166II | GTNNAC | 1 cut(s) | 147 |
| Hpy188I | TCNGA | 7 cut(s) | 78, 313, 319, 418, 457, 535, 582 |
| Hpy188III | TCNNGA | 2 cut(s) | 14, 247 |
| Hpy8I | GTNNAC | 1 cut(s) | 147 |
| HpyAV | CCTTC | 3 cut(s) | 28, 580, 658 |
| HpyCH4III | ACNGT | 2 cut(s) | 280, 560 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 332 |
| HpyF3I | CTNAG | 5 cut(s) | 390, 399, 417, 489, 683 |
| Hsp92II | CATG | 1 cut(s) | 201 |
| Ksp22I | TGATCA | 1 cut(s) | 475 |
| Kzo9I | GATC | 3 cut(s) | 43, 249, 475 |
| LpnPI | CCDG | 3 cut(s) | 114, 140, 341 |
| LweI | GCATC | 1 cut(s) | 319 |
| MaeI | CTAG | 2 cut(s) | 408, 432 |
| MaeIII | GTNAC | 1 cut(s) | 539 |
| MalI | GATC | 3 cut(s) | 45, 251, 477 |
| MboI | GATC | 3 cut(s) | 43, 249, 475 |
| MboII | GAAGA | 5 cut(s) | 332, 476, 518, 584, 595 |
| MhlI | GDGCHC | 1 cut(s) | 349 |
| MluCI | AATT | 4 cut(s) | 66, 229, 257, 671 |
| MlyI | GAGTC | 2 cut(s) | 317, 571 |
| MmeI | TCCRAC | 1 cut(s) | 610 |
| MnlI | CCTC | 5 cut(s) | 298, 316, 319, 385, 559 |
| MseI | TTAA | 4 cut(s) | 24, 186, 203, 255 |
| MspCI | CTTAAG | 1 cut(s) | 23 |
| NdeII | GATC | 3 cut(s) | 43, 249, 475 |
| NlaIII | CATG | 1 cut(s) | 201 |
| NlaIV | GGNNCC | 1 cut(s) | 348 |
| NmuCI | GTSAC | 1 cut(s) | 539 |
| PfeI | GAWTC | 3 cut(s) | 314, 452, 530 |
| PleI | GAGTC | 2 cut(s) | 316, 571 |
| PpsI | GAGTC | 2 cut(s) | 316, 571 |
| PspN4I | GGNNCC | 1 cut(s) | 348 |
| RsaI | GTAC | 3 cut(s) | 225, 388, 597 |
| RsaNI | GTAC | 3 cut(s) | 224, 387, 596 |
| SaqAI | TTAA | 4 cut(s) | 24, 186, 203, 255 |
| Sau3AI | GATC | 3 cut(s) | 43, 249, 475 |
| ScaI | AGTACT | 1 cut(s) | 597 |
| SchI | GAGTC | 2 cut(s) | 317, 571 |
| SduI | GDGCHC | 1 cut(s) | 349 |
| SfaNI | GCATC | 1 cut(s) | 319 |
| SmlI | CTYRAG | 1 cut(s) | 23 |
| SmoI | CTYRAG | 1 cut(s) | 23 |
| Sse9I | AATT | 4 cut(s) | 66, 229, 257, 671 |
| SsiI | CCGC | 1 cut(s) | 501 |
| SspMI | CTAG | 2 cut(s) | 408, 432 |
| StyI | CCWWGG | 2 cut(s) | 88, 483 |
| TaaI | ACNGT | 2 cut(s) | 280, 560 |
| TasI | AATT | 4 cut(s) | 66, 229, 257, 671 |
| TatI | WGTACW | 2 cut(s) | 223, 595 |
| TfiI | GAWTC | 3 cut(s) | 314, 452, 530 |
| Tru1I | TTAA | 4 cut(s) | 24, 186, 203, 255 |
| Tru9I | TTAA | 4 cut(s) | 24, 186, 203, 255 |
| TscAI | CASTG | 2 cut(s) | 159, 565 |
| TseFI | GTSAC | 1 cut(s) | 539 |
| Tsp45I | GTSAC | 1 cut(s) | 539 |
| TspDTI | ATGAA | 5 cut(s) | 186, 465, 477, 561, 585 |
| TspRI | CASTG | 2 cut(s) | 159, 565 |
| Vha464I | CTTAAG | 1 cut(s) | 23 |
| XspI | CTAG | 2 cut(s) | 408, 432 |
| ZrmI | AGTACT | 1 cut(s) | 597 |