Rw3G016710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0010700
Physical Location & Seq
Forward (+)
17866823 .. 17870495
3673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G016710.1

Sequence Viewer

Length: 825 bp
ATGAAGTTTTGGGGTGTTGAGGTAAAGAGTGGAGAGTCTATTGTTGTTGAACCTGGTATTACCCTTGTCCATCTTTCACAGGCCTGTCTGGATGAGGTCAAGAAAGGAAAGGGAAGTGATTCTATTTCACTCTTTGTGAAAACCGGTGATCAGAAGCTTGTTATTGGACATCTTTATGCTGATAAACTACCTCAGATATATTTTGATATTGTGTTTAATAAAAAATTTGTGCTATCTCATAATGGGAAAAGTGGGAGCGTCCACTTCCATGGATATATTGCTAATATGGGATATCCTTTTTCCGAACCAAAGGTGAGTCTTGAGGAAGCTAAGAAAGAAATTAAATCTGATAAGAAGGATTCTAGTAGTGACGATGATGATGATGATGATGATGAATCTGAAGATGAAGAGTTTGATCAGGTCAAGAGTGTGGAAGATGGCAGTGAAGATGATGAAGAAAGTAGTGATGATGATGATGATAGTGAAGATGAAGATGATGACAGCGAGGAAGAGAATGAAGAGACTCCAAATAAGGTTGATGGGAGCAACAAACGTGCTGCTGAGAGTAGTAAAACACCTGTTCAAAAGAAGGCAAAGTTTGTTACTCCTGAAAAAACTAGTGGCAAGAAAGGAGCTGTCCACACTGCAACTCCTTACCCTTCAAAACAGGCTCTCAAAAAACCAGCTAATACTGACCAGACAAAGCTGCAGAGCTCAAAATCAAGTGGTGGTGGTGCATTCCGTTGTGATCCCTGCAATAGGTCGTTTAACTCAGATGGTGCACTGCAGAGTCATACAAAGGCAAAGCATGGAGCTGCAAAGTGA

Protein Analysis

274

Amino Acids

29.94

Weight (kDa)

4.81

Isoelectric Point (pI)

47.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 3 - 93 9.2e-15 Nucleoplasmin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010700)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03740
fragaria_vesca FvH4_6g17790
malus_domestica MD12G1017000.v1.1 MD14G1014900.v1.1
prunus_persica Prupe.7G118500_v2.0.a1 Prupe.7G118500_v2.0.a1
pyrus_communis pycom12g01380 pycom14g01240
rosa_chinensis RchiOBHm_Chr3g0472041
rosa_laevigata RLG00000024110
rosa_multiflora Rmu_sc0002532.1_g000010
rosa_roxburghii Rroxscaffold_6G00409300
rosa_rugosa Rorug03G0121800
rosa_samantha Rh3AG173400 Rh3AG173500 Rh3BG198900 Rh3CG190000 Rh3CG197400 Rh3DG175600
rosa_wichuraiana Rw3G016710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 743
AcsI RAATTY 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 420
AfiI CCNNNNNNNGG 1 cut(s) 759
AgeI ACCGGT 1 cut(s) 143
AgsI TTSAA 3 cut(s) 50, 584, 663
AhlI ACTAGT 1 cut(s) 617
AjnI CCWGG 1 cut(s) 52
AluBI AGCT 7 cut(s) 157, 329, 635, 686, 706, 714, 815
AluI AGCT 7 cut(s) 157, 329, 635, 686, 706, 714, 815
Alw21I GWGCWC 2 cut(s) 716, 784
Alw26I GTCTC 1 cut(s) 515
Alw44I GTGCAC 1 cut(s) 780
AlwI GGATC 1 cut(s) 743
AoxI GGCC 1 cut(s) 81
ApaLI GTGCAC 1 cut(s) 780
ApeKI GCWGC 3 cut(s) 557, 706, 815
ApoI RAATTY 1 cut(s) 224
AsiGI ACCGGT 1 cut(s) 143
Asp700I GAANNNNTTC 1 cut(s) 118
AsuHPI GGTGA 2 cut(s) 158, 325
BaeGI GKGCMC 1 cut(s) 784
BanII GRGCYC 1 cut(s) 716
Bbv12I GWGCWC 2 cut(s) 716, 784
BbvI GCAGC 3 cut(s) 544, 693, 802
BccI CCATC 4 cut(s) 78, 431, 533, 770
BciT130I CCWGG 1 cut(s) 54
BclI TGATCA 2 cut(s) 148, 415
BcoDI GTCTC 1 cut(s) 515
BcuI ACTAGT 1 cut(s) 617
BfaI CTAG 2 cut(s) 363, 618
BfmI CTRYAG 2 cut(s) 707, 785
BisI GCNGC 3 cut(s) 558, 707, 816
BlsI GCNGC 3 cut(s) 559, 708, 817
Bme1390I CCNGG 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 268
BsaWI WCCGGW 1 cut(s) 143
BsaXI ACNNNNNCTCC 2 cut(s) 634, 664
Bsc4I CCNNNNNNNGG 1 cut(s) 759
Bse118I RCCGGY 1 cut(s) 143
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 268
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 1 cut(s) 759
BseMII CTCAG 3 cut(s) 206, 552, 786
BseSI GKGCMC 1 cut(s) 784
BseXI GCAGC 3 cut(s) 544, 693, 802
BshFI GGCC 1 cut(s) 83
BshTI ACCGGT 1 cut(s) 143
BsiHKAI GWGCWC 2 cut(s) 716, 784
BsiSI CCGG 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 759
BsmAI GTCTC 1 cut(s) 515
BsmI GAATGC 1 cut(s) 737
BsnI GGCC 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 716, 784
Bsp143I GATC 3 cut(s) 148, 415, 748
Bsp19I CCATGG 1 cut(s) 268
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 3 cut(s) 205, 553, 785
BspMAI CTGCAG 2 cut(s) 711, 789
BspPI GGATC 1 cut(s) 743
BsrFI RCCGGY 1 cut(s) 143
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 3 cut(s) 148, 415, 748
BssT1I CCWWGG 1 cut(s) 268
Bst2UI CCWGG 1 cut(s) 54
Bst6I CTCTTC 3 cut(s) 402, 504, 513
BstDEI CTNAG 4 cut(s) 192, 330, 561, 772
BstDSI CCRYGG 1 cut(s) 268
BstENI CCTNNNNNAGG 1 cut(s) 757
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 3 cut(s) 151, 418, 751
BstMAI GTCTC 1 cut(s) 515
BstMBI GATC 3 cut(s) 148, 415, 748
BstNI CCWGG 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 52
BstSFI CTRYAG 2 cut(s) 707, 785
BstSLI GKGCMC 1 cut(s) 784
BstV1I GCAGC 3 cut(s) 544, 693, 802
BstXI CCANNNNNNTGG 1 cut(s) 269
BsuRI GGCC 1 cut(s) 83
BtgI CCRYGG 1 cut(s) 268
BtsCI GGATG 1 cut(s) 97
BtsI GCAGTG 3 cut(s) 448, 642, 782
BtsIMutI CAGTG 3 cut(s) 448, 642, 782
Cfr10I RCCGGY 1 cut(s) 143
CseI GACGC 1 cut(s) 247
CsiI ACCWGGT 1 cut(s) 52
CspAI ACCGGT 1 cut(s) 143
CviAII CATG 2 cut(s) 269, 809
CviJI RGCY 9 cut(s) 83, 157, 329, 635, 671, 686, 706, 714, 815
CviKI_1 RGCY 9 cut(s) 83, 157, 329, 635, 671, 686, 706, 714, 815
DdeI CTNAG 4 cut(s) 192, 330, 561, 772
DpnI GATC 3 cut(s) 150, 417, 750
DpnII GATC 3 cut(s) 148, 415, 748
Eam1104I CTCTTC 3 cut(s) 402, 504, 513
EarI CTCTTC 3 cut(s) 402, 504, 513
Ecl136II GAGCTC 1 cut(s) 714
Eco130I CCWWGG 1 cut(s) 268
Eco147I AGGCCT 1 cut(s) 83
Eco24I GRGCYC 1 cut(s) 716
Eco32I GATATC 1 cut(s) 293
Eco53kI GAGCTC 1 cut(s) 714
Eco57I CTGAAG 1 cut(s) 420
EcoICRI GAGCTC 1 cut(s) 714
EcoNI CCTNNNNNAGG 1 cut(s) 757
EcoRII CCWGG 1 cut(s) 52
EcoRV GATATC 1 cut(s) 293
EcoT14I CCWWGG 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 716
ErhI CCWWGG 1 cut(s) 268
FaeI CATG 2 cut(s) 272, 812
FaiI YATR 8 cut(s) 177, 199, 240, 270, 276, 287, 795, 810
FatI CATG 2 cut(s) 268, 808
FbaI TGATCA 2 cut(s) 148, 415
Fnu4HI GCNGC 3 cut(s) 558, 707, 816
FokI GGATG 1 cut(s) 104
FriOI GRGCYC 1 cut(s) 716
Fsp4HI GCNGC 3 cut(s) 558, 707, 816
FspBI CTAG 2 cut(s) 363, 618
GluI GCNGC 3 cut(s) 558, 707, 816
HaeIII GGCC 1 cut(s) 83
HapII CCGG 1 cut(s) 144
HgaI GACGC 1 cut(s) 247
Hin1II CATG 2 cut(s) 272, 812
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 7 cut(s) 35, 119, 316, 359, 395, 523, 790
HpaII CCGG 1 cut(s) 144
HphI GGTGA 2 cut(s) 158, 325
Hpy166II GTNNAC 3 cut(s) 262, 640, 782
Hpy188I TCNGA 6 cut(s) 153, 195, 304, 349, 400, 775
Hpy188III TCNNGA 5 cut(s) 89, 100, 320, 424, 608
Hpy8I GTNNAC 3 cut(s) 262, 640, 782
HpyAV CCTTC 3 cut(s) 349, 583, 669
HpyCH4IV ACGT 1 cut(s) 553
HpyCH4V TGCA 7 cut(s) 647, 709, 737, 756, 782, 787, 818
HpyF3I CTNAG 4 cut(s) 192, 330, 561, 772
HpySE526I ACGT 1 cut(s) 553
Hsp92II CATG 2 cut(s) 272, 812
Ksp22I TGATCA 2 cut(s) 148, 415
Kzo9I GATC 3 cut(s) 148, 415, 748
LmnI GCTCC 4 cut(s) 255, 543, 632, 812
Lsp1109I GCAGC 3 cut(s) 544, 693, 802
MabI ACCWGGT 1 cut(s) 52
MaeI CTAG 2 cut(s) 363, 618
MaeII ACGT 1 cut(s) 553
MaeIII GTNAC 2 cut(s) 368, 601
MalI GATC 3 cut(s) 150, 417, 750
MboI GATC 3 cut(s) 148, 415, 748
MboII GAAGA 9 cut(s) 413, 419, 446, 458, 467, 497, 503, 521, 530
MhlI GDGCHC 2 cut(s) 716, 784
MluCI AATT 2 cut(s) 224, 339
MlyI GAGTC 4 cut(s) 44, 325, 517, 799
MnlI CCTC 5 cut(s) 13, 88, 201, 316, 499
MroXI GAANNNNTTC 1 cut(s) 118
MseI TTAA 3 cut(s) 216, 342, 768
MslI CAYNNNNRTG 2 cut(s) 174, 267
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 54
Mva1269I GAATGC 1 cut(s) 737
MvaI CCWGG 1 cut(s) 54
NcoI CCATGG 1 cut(s) 268
NdeII GATC 3 cut(s) 148, 415, 748
NlaIII CATG 2 cut(s) 272, 812
NmuCI GTSAC 1 cut(s) 368
PceI AGGCCT 1 cut(s) 83
PctI GAATGC 1 cut(s) 737
PdmI GAANNNNTTC 1 cut(s) 118
PfeI GAWTC 3 cut(s) 119, 359, 395
PinAI ACCGGT 1 cut(s) 143
PkrI GCNGC 3 cut(s) 559, 708, 817
PleI GAGTC 4 cut(s) 43, 324, 517, 798
PpsI GAGTC 4 cut(s) 43, 324, 517, 798
Psp124BI GAGCTC 1 cut(s) 716
Psp6I CCWGG 1 cut(s) 52
PspGI CCWGG 1 cut(s) 52
PstI CTGCAG 2 cut(s) 711, 789
RseI CAYNNNNRTG 2 cut(s) 174, 267
SacI GAGCTC 1 cut(s) 716
SaqAI TTAA 3 cut(s) 216, 342, 768
SatI GCNGC 3 cut(s) 558, 707, 816
Sau3AI GATC 3 cut(s) 148, 415, 748
SchI GAGTC 4 cut(s) 44, 325, 517, 799
ScrFI CCNGG 1 cut(s) 54
SduI GDGCHC 2 cut(s) 716, 784
SexAI ACCWGGT 1 cut(s) 52
SfcI CTRYAG 2 cut(s) 707, 785
SmiMI CAYNNNNRTG 2 cut(s) 174, 267
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SpeI ACTAGT 1 cut(s) 617
Sse9I AATT 2 cut(s) 224, 339
SseBI AGGCCT 1 cut(s) 83
SspMI CTAG 2 cut(s) 363, 618
SstI GAGCTC 1 cut(s) 716
StuI AGGCCT 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 52
StyI CCWWGG 1 cut(s) 268
TaiI ACGT 1 cut(s) 556
TasI AATT 2 cut(s) 224, 339
TfiI GAWTC 3 cut(s) 119, 359, 395
Tru1I TTAA 3 cut(s) 216, 342, 768
Tru9I TTAA 3 cut(s) 216, 342, 768
TscAI CASTG 3 cut(s) 448, 649, 789
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 3 cut(s) 557, 706, 815
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 6 cut(s) 17, 408, 420, 468, 504, 531
TspGWI ACGGA 1 cut(s) 731
TspRI CASTG 3 cut(s) 448, 649, 789
VneI GTGCAC 1 cut(s) 780
XagI CCTNNNNNAGG 1 cut(s) 757
XapI RAATTY 1 cut(s) 224
XmnI GAANNNNTTC 1 cut(s) 118
XspI CTAG 2 cut(s) 363, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.