RchiOBHm_Chr3g0472041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0010700
Physical Location & Seq
Reverse (-)
17859083 .. 17860661
1579 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43777

Sequence Viewer

Length: 318 bp
ATGGCGAACAAGATGAAGTTTTGGGGTGTTGAGGTAAAGAGTGGACAGTCTGTTGTTGTTGAACCTGGTATTACCCTTGTCCATCTTTCACAGGCCTGTCTGGATGAGGTCAAGAAAGGAAAGGGAAGTGATTCTATTTCACTCTTTGTGAAAACCGGTGATCAGAAGCTTGTTATTGGACATCTTTATGCTGATAAACTACCTCAGATATATTTTGATATTGTGTTTAATAAAAAATTTGTGCTATCTCATAATGGGAAAAGTGGGAGCGTCCACTTCCATGGATATATTGCTAATACGGGATATCCTTTTTGTTAA

Protein Analysis

105

Amino Acids

11.58

Weight (kDa)

9.12

Isoelectric Point (pI)

29.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 7 - 97 2.4e-16 Nucleoplasmin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010700)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03740
fragaria_vesca FvH4_6g17790
malus_domestica MD12G1017000.v1.1 MD14G1014900.v1.1
prunus_persica Prupe.7G118500_v2.0.a1 Prupe.7G118500_v2.0.a1
pyrus_communis pycom12g01380 pycom14g01240
rosa_chinensis RchiOBHm_Chr3g0472041
rosa_laevigata RLG00000024110
rosa_multiflora Rmu_sc0002532.1_g000010
rosa_roxburghii Rroxscaffold_6G00409300
rosa_rugosa Rorug03G0121800
rosa_samantha Rh3AG173400 Rh3AG173500 Rh3BG198900 Rh3CG190000 Rh3CG197400 Rh3DG175600
rosa_wichuraiana Rw3G016710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 236
AgeI ACCGGT 1 cut(s) 155
AgsI TTSAA 1 cut(s) 62
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
AoxI GGCC 1 cut(s) 93
ApoI RAATTY 1 cut(s) 236
AsiGI ACCGGT 1 cut(s) 155
Asp700I GAANNNNTTC 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 170
BccI CCATC 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 66
BclI TGATCA 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 280
BsaWI WCCGGW 1 cut(s) 155
Bse118I RCCGGY 1 cut(s) 155
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 280
BseGI GGATG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 218
BshFI GGCC 1 cut(s) 95
BshTI ACCGGT 1 cut(s) 155
BsiSI CCGG 1 cut(s) 156
BsnI GGCC 1 cut(s) 95
Bsp143I GATC 1 cut(s) 160
Bsp19I CCATGG 1 cut(s) 280
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 217
BsrFI RCCGGY 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 48
BstDEI CTNAG 1 cut(s) 204
BstDSI CCRYGG 1 cut(s) 280
BstF5I GGATG 1 cut(s) 109
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 64
BstXI CCANNNNNNTGG 1 cut(s) 281
BsuRI GGCC 1 cut(s) 95
BtgI CCRYGG 1 cut(s) 280
BtsCI GGATG 1 cut(s) 109
Cfr10I RCCGGY 1 cut(s) 155
CseI GACGC 1 cut(s) 259
CsiI ACCWGGT 1 cut(s) 64
CspAI ACCGGT 1 cut(s) 155
CviAII CATG 1 cut(s) 281
CviJI RGCY 2 cut(s) 95, 169
CviKI_1 RGCY 2 cut(s) 95, 169
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 280
Eco147I AGGCCT 1 cut(s) 95
Eco32I GATATC 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 64
EcoRV GATATC 1 cut(s) 305
EcoT14I CCWWGG 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 280
FaeI CATG 1 cut(s) 284
FaiI YATR 5 cut(s) 189, 211, 252, 282, 288
FatI CATG 1 cut(s) 280
FbaI TGATCA 1 cut(s) 160
FokI GGATG 1 cut(s) 116
HaeIII GGCC 1 cut(s) 95
HapII CCGG 1 cut(s) 156
HgaI GACGC 1 cut(s) 259
Hin1II CATG 1 cut(s) 284
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 1 cut(s) 131
HpaII CCGG 1 cut(s) 156
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 2 cut(s) 44, 274
Hpy188I TCNGA 2 cut(s) 165, 207
Hpy188III TCNNGA 2 cut(s) 101, 112
Hpy8I GTNNAC 2 cut(s) 44, 274
HpyCH4III ACNGT 1 cut(s) 48
HpyF3I CTNAG 1 cut(s) 204
Hsp92II CATG 1 cut(s) 284
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 267
LpnPI CCDG 6 cut(s) 51, 77, 78, 86, 109, 169
MabI ACCWGGT 1 cut(s) 64
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MluCI AATT 1 cut(s) 236
MnlI CCTC 3 cut(s) 25, 100, 213
MroXI GAANNNNTTC 1 cut(s) 130
MseI TTAA 2 cut(s) 228, 316
MslI CAYNNNNRTG 2 cut(s) 186, 279
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
NcoI CCATGG 1 cut(s) 280
NdeII GATC 1 cut(s) 160
NlaIII CATG 1 cut(s) 284
PceI AGGCCT 1 cut(s) 95
PdmI GAANNNNTTC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 131
PinAI ACCGGT 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
RseI CAYNNNNRTG 2 cut(s) 186, 279
SaqAI TTAA 2 cut(s) 228, 316
Sau3AI GATC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 66
SetI ASST 5 cut(s) 36, 67, 111, 171, 205
SexAI ACCWGGT 1 cut(s) 64
SmiMI CAYNNNNRTG 2 cut(s) 186, 279
Sse9I AATT 1 cut(s) 236
SseBI AGGCCT 1 cut(s) 95
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 64
StyI CCWWGG 1 cut(s) 280
TaaI ACNGT 1 cut(s) 48
TasI AATT 1 cut(s) 236
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 2 cut(s) 228, 316
Tru9I TTAA 2 cut(s) 228, 316
TspDTI ATGAA 1 cut(s) 29
XapI RAATTY 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.