histone deacetylase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G03740 |
| fragaria_vesca | FvH4_6g17790 |
| malus_domestica | MD12G1017000.v1.1 MD14G1014900.v1.1 |
| prunus_persica | Prupe.7G118500_v2.0.a1 Prupe.7G118500_v2.0.a1 |
| pyrus_communis | pycom12g01380 pycom14g01240 |
| rosa_chinensis | RchiOBHm_Chr3g0472041 |
| rosa_laevigata | RLG00000024110 |
| rosa_multiflora | Rmu_sc0002532.1_g000010 |
| rosa_roxburghii | Rroxscaffold_6G00409300 |
| rosa_rugosa | Rorug03G0121800 |
| rosa_samantha | Rh3AG173400 Rh3AG173500 Rh3BG198900 Rh3CG190000 Rh3CG197400 Rh3DG175600 |
| rosa_wichuraiana | Rw3G016710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 634 |
| AccI | GTMKAC | 1 cut(s) | 635 |
| AciI | CCGC | 1 cut(s) | 798 |
| AcsI | RAATTY | 3 cut(s) | 168, 185, 224 |
| AcuI | CTGAAG | 1 cut(s) | 333 |
| AfaI | GTAC | 1 cut(s) | 382 |
| AfeI | AGCGCT | 1 cut(s) | 880 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 243, 794, 865 |
| AgsI | TTSAA | 3 cut(s) | 50, 808, 835 |
| AluBI | AGCT | 5 cut(s) | 157, 232, 401, 425, 758 |
| AluI | AGCT | 5 cut(s) | 157, 232, 401, 425, 758 |
| Alw26I | GTCTC | 2 cut(s) | 285, 584 |
| Aor51HI | AGCGCT | 1 cut(s) | 880 |
| AoxI | GGCC | 1 cut(s) | 741 |
| ApeKI | GCWGC | 3 cut(s) | 705, 778, 881 |
| ApoI | RAATTY | 3 cut(s) | 168, 185, 224 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 172 |
| AspLEI | GCGC | 1 cut(s) | 881 |
| AsuHPI | GGTGA | 4 cut(s) | 308, 388, 536, 719 |
| BbvI | GCAGC | 3 cut(s) | 717, 790, 868 |
| BccI | CCATC | 1 cut(s) | 836 |
| BcoDI | GTCTC | 2 cut(s) | 285, 584 |
| BfaI | CTAG | 1 cut(s) | 426 |
| BfoI | RGCGCY | 1 cut(s) | 882 |
| BfuAI | ACCTGC | 1 cut(s) | 634 |
| BisI | GCNGC | 4 cut(s) | 706, 779, 799, 882 |
| BlsI | GCNGC | 4 cut(s) | 707, 780, 800, 883 |
| BmcAI | AGTACT | 1 cut(s) | 382 |
| BmiI | GGNNCC | 1 cut(s) | 786 |
| BmrI | ACTGGG | 1 cut(s) | 187 |
| BmsI | GCATC | 3 cut(s) | 79, 379, 532 |
| BmuI | ACTGGG | 1 cut(s) | 187 |
| BoxI | GACNNNNGTC | 1 cut(s) | 479 |
| BsaJI | CCNNGG | 1 cut(s) | 477 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 243, 794, 865 |
| Bse1I | ACTGG | 5 cut(s) | 148, 193, 248, 274, 769 |
| Bse3DI | GCAATG | 2 cut(s) | 645, 848 |
| BseDI | CCNNGG | 1 cut(s) | 477 |
| BseGI | GGATG | 5 cut(s) | 97, 325, 394, 520, 589 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 243, 794, 865 |
| BseMI | GCAATG | 2 cut(s) | 645, 848 |
| BseMII | CTCAG | 4 cut(s) | 171, 375, 402, 852 |
| BseNI | ACTGG | 5 cut(s) | 148, 193, 248, 274, 769 |
| BseRI | GAGGAG | 1 cut(s) | 714 |
| BseXI | GCAGC | 3 cut(s) | 717, 790, 868 |
| BshFI | GGCC | 1 cut(s) | 743 |
| BsiSI | CCGG | 1 cut(s) | 744 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 243, 794, 865 |
| BsmAI | GTCTC | 2 cut(s) | 285, 584 |
| BsnI | GGCC | 1 cut(s) | 743 |
| BspACI | CCGC | 1 cut(s) | 798 |
| BspANI | GGCC | 1 cut(s) | 743 |
| BspCNI | CTCAG | 4 cut(s) | 172, 376, 403, 851 |
| BspLI | GGNNCC | 1 cut(s) | 786 |
| BspMI | ACCTGC | 1 cut(s) | 634 |
| BsrDI | GCAATG | 2 cut(s) | 645, 848 |
| BsrI | ACTGG | 5 cut(s) | 148, 193, 248, 274, 769 |
| BssECI | CCNNGG | 1 cut(s) | 477 |
| BssT1I | CCWWGG | 1 cut(s) | 477 |
| Bst4CI | ACNGT | 2 cut(s) | 334, 572 |
| Bst6I | CTCTTC | 3 cut(s) | 309, 573, 582 |
| BstC8I | GCNNGC | 2 cut(s) | 741, 783 |
| BstDEI | CTNAG | 5 cut(s) | 180, 384, 393, 411, 838 |
| BstF5I | GGATG | 5 cut(s) | 97, 325, 394, 520, 589 |
| BstH2I | RGCGCY | 1 cut(s) | 882 |
| BstHHI | GCGC | 1 cut(s) | 881 |
| BstMAI | GTCTC | 2 cut(s) | 285, 584 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 398, 702, 740, 819 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 479 |
| BstV1I | GCAGC | 3 cut(s) | 717, 790, 868 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 269 |
| BsuRI | GGCC | 1 cut(s) | 743 |
| BtsCI | GGATG | 5 cut(s) | 97, 325, 394, 520, 589 |
| BtsI | GCAGTG | 1 cut(s) | 508 |
| BtsIMutI | CAGTG | 3 cut(s) | 267, 508, 577 |
| BveI | ACCTGC | 1 cut(s) | 634 |
| Cac8I | GCNNGC | 2 cut(s) | 741, 783 |
| CfoI | GCGC | 1 cut(s) | 881 |
| CseI | GACGC | 2 cut(s) | 247, 697 |
| Csp6I | GTAC | 1 cut(s) | 381 |
| CviJI | RGCY | 9 cut(s) | 157, 232, 401, 425, 605, 743, 758, 785, 858 |
| CviKI_1 | RGCY | 9 cut(s) | 157, 232, 401, 425, 605, 743, 758, 785, 858 |
| CviQI | GTAC | 1 cut(s) | 381 |
| DdeI | CTNAG | 5 cut(s) | 180, 384, 393, 411, 838 |
| Eam1104I | CTCTTC | 3 cut(s) | 309, 573, 582 |
| EarI | CTCTTC | 3 cut(s) | 309, 573, 582 |
| Eco130I | CCWWGG | 1 cut(s) | 477 |
| Eco47III | AGCGCT | 1 cut(s) | 880 |
| Eco57I | CTGAAG | 1 cut(s) | 333 |
| EcoRI | GAATTC | 1 cut(s) | 168 |
| EcoT14I | CCWWGG | 1 cut(s) | 477 |
| ErhI | CCWWGG | 1 cut(s) | 477 |
| FaiI | YATR | 6 cut(s) | 153, 240, 276, 359, 716, 861 |
| FblI | GTMKAC | 1 cut(s) | 635 |
| Fnu4HI | GCNGC | 4 cut(s) | 706, 779, 799, 882 |
| FokI | GGATG | 5 cut(s) | 104, 332, 401, 527, 596 |
| Fsp4HI | GCNGC | 4 cut(s) | 706, 779, 799, 882 |
| FspBI | CTAG | 1 cut(s) | 426 |
| GlaI | GCGC | 1 cut(s) | 880 |
| GluI | GCNGC | 4 cut(s) | 706, 779, 799, 882 |
| HaeII | RGCGCY | 1 cut(s) | 882 |
| HaeIII | GGCC | 1 cut(s) | 743 |
| HapII | CCGG | 1 cut(s) | 744 |
| HgaI | GACGC | 2 cut(s) | 247, 697 |
| HhaI | GCGC | 1 cut(s) | 881 |
| Hin6I | GCGC | 1 cut(s) | 879 |
| HinP1I | GCGC | 1 cut(s) | 879 |
| HindIII | AAGCTT | 1 cut(s) | 155 |
| HinfI | GANTC | 4 cut(s) | 308, 443, 592, 632 |
| HpaII | CCGG | 1 cut(s) | 744 |
| HphI | GGTGA | 4 cut(s) | 308, 388, 536, 719 |
| Hpy166II | GTNNAC | 3 cut(s) | 262, 636, 712 |
| Hpy188I | TCNGA | 8 cut(s) | 307, 313, 412, 448, 474, 597, 766, 841 |
| Hpy188III | TCNNGA | 2 cut(s) | 89, 100 |
| Hpy8I | GTNNAC | 3 cut(s) | 262, 636, 712 |
| Hpy99I | CGWCG | 1 cut(s) | 542 |
| HpyAV | CCTTC | 2 cut(s) | 488, 655 |
| HpyCH4III | ACNGT | 2 cut(s) | 334, 572 |
| HpyCH4V | TGCA | 6 cut(s) | 70, 734, 822, 848, 853, 884 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 398, 702, 740, 819 |
| HpyF3I | CTNAG | 5 cut(s) | 180, 384, 393, 411, 838 |
| HspAI | GCGC | 1 cut(s) | 879 |
| LmnI | GCTCC | 2 cut(s) | 255, 790 |
| Lsp1109I | GCAGC | 3 cut(s) | 717, 790, 868 |
| LweI | GCATC | 3 cut(s) | 79, 379, 532 |
| MaeI | CTAG | 1 cut(s) | 426 |
| MaeIII | GTNAC | 1 cut(s) | 673 |
| MboII | GAAGA | 6 cut(s) | 326, 467, 518, 566, 590, 599 |
| MfeI | CAATTG | 1 cut(s) | 808 |
| MluCI | AATT | 5 cut(s) | 168, 185, 224, 301, 808 |
| MlyI | GAGTC | 2 cut(s) | 586, 641 |
| MnlI | CCTC | 7 cut(s) | 13, 310, 379, 505, 568, 574, 735 |
| MroXI | GAANNNNTTC | 1 cut(s) | 172 |
| MseI | TTAA | 1 cut(s) | 405 |
| MspI | CCGG | 1 cut(s) | 744 |
| MunI | CAATTG | 1 cut(s) | 808 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 398, 702, 740, 819 |
| NlaIV | GGNNCC | 1 cut(s) | 786 |
| NmeAIII | GCCGAG | 1 cut(s) | 655 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 537 |
| PdmI | GAANNNNTTC | 1 cut(s) | 172 |
| PfeI | GAWTC | 2 cut(s) | 308, 443 |
| PkrI | GCNGC | 4 cut(s) | 707, 780, 800, 883 |
| PleI | GAGTC | 2 cut(s) | 586, 640 |
| PpsI | GAGTC | 2 cut(s) | 586, 640 |
| PshAI | GACNNNNGTC | 1 cut(s) | 479 |
| PspN4I | GGNNCC | 1 cut(s) | 786 |
| RsaI | GTAC | 1 cut(s) | 382 |
| RsaNI | GTAC | 1 cut(s) | 381 |
| SaqAI | TTAA | 1 cut(s) | 405 |
| SatI | GCNGC | 4 cut(s) | 706, 779, 799, 882 |
| ScaI | AGTACT | 1 cut(s) | 382 |
| SchI | GAGTC | 2 cut(s) | 586, 641 |
| SfaNI | GCATC | 3 cut(s) | 79, 379, 532 |
| Sse9I | AATT | 5 cut(s) | 168, 185, 224, 301, 808 |
| SsiI | CCGC | 1 cut(s) | 798 |
| SspMI | CTAG | 1 cut(s) | 426 |
| StyI | CCWWGG | 1 cut(s) | 477 |
| TaaI | ACNGT | 2 cut(s) | 334, 572 |
| TaqI | TCGA | 1 cut(s) | 287 |
| TasI | AATT | 5 cut(s) | 168, 185, 224, 301, 808 |
| TatI | WGTACW | 1 cut(s) | 380 |
| TauI | GCSGC | 1 cut(s) | 801 |
| TfiI | GAWTC | 2 cut(s) | 308, 443 |
| Tru1I | TTAA | 1 cut(s) | 405 |
| Tru9I | TTAA | 1 cut(s) | 405 |
| TscAI | CASTG | 3 cut(s) | 274, 508, 577 |
| TseI | GCWGC | 3 cut(s) | 705, 778, 881 |
| TspDTI | ATGAA | 5 cut(s) | 456, 468, 531, 573, 600 |
| TspRI | CASTG | 3 cut(s) | 274, 508, 577 |
| XapI | RAATTY | 3 cut(s) | 168, 185, 224 |
| XmiI | GTMKAC | 1 cut(s) | 635 |
| XmnI | GAANNNNTTC | 1 cut(s) | 172 |
| XspI | CTAG | 1 cut(s) | 426 |
| ZrmI | AGTACT | 1 cut(s) | 382 |