Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0010700

Physical Location & Seq

Genomic Coordinates Reverse (-)

16079757 .. 16082426

Gene Structure 2670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG173500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCGAACAAGATGAAGTTTTGGGGTGTTGAGGTAAAGAGTGGACAGTCTGTTGTTGTTGAACCTGGTATTACCCTTGTCCATCTTTCACAGGCCTGTCTGGATGAGGTCAAGAAAGGAAAGGGAAGTGATTCTATTTCACTCTTTGTGAAAACCGGTGATCAGAAGCTTGTTATTGGACATCTTTATGCTGATAAACTACCTCAGATATATTTTGATATTGTGTTTAATAAAAAATTTGTGCTATCTCATAATGGGAAAAGTGGGAGCGTCCACTTCCATGGATATATTGCTAATACGGGATATCCTTTTTCCGAACCAAAGGTGAGTCTTGAGGAAGCTAAGAAAGAAATTAAATCTGATCAGAAGGATTCTAGTAGTGACGACGATGATGATGATGAATCTGAAGATGAAGAATTTGATCAGGTCAAGAGTGTGGAAGATGGCAGTGAAGATGATGAAGAAAGTAGTGATGATGATGATGATGATAGTGAAGATGAAGATGATGACAGCGAGGAAGAGAATGAAGAGACTCCAAATAAGGTAAATTACTCCTATCATCAACACCTTTGCCTTTTTGGTTGGAGATGTCAAATTGCTTCCATCCTGTCCATGTCGTTTATCATAAGCCAATTATTATTGCCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

24.27

Weight (kDa)

4.33

Isoelectric Point (pI)

52.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPL	PF17800	7 - 97	2e-15	Nucleoplasmin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03740
fragaria_vesca	FvH4_6g17790
malus_domestica	MD12G1017000.v1.1 MD14G1014900.v1.1
prunus_persica	Prupe.7G118500_v2.0.a1 Prupe.7G118500_v2.0.a1
pyrus_communis	pycom12g01380 pycom14g01240
rosa_chinensis	RchiOBHm_Chr3g0472041
rosa_laevigata	RLG00000024110
rosa_multiflora	Rmu_sc0002532.1_g000010
rosa_roxburghii	Rroxscaffold_6G00409300
rosa_rugosa	Rorug03G0121800
rosa_samantha	Rh3AG173400 Rh3AG173500 Rh3BG198900 Rh3CG190000 Rh3CG197400 Rh3DG175600
rosa_wichuraiana	Rw3G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	236, 416
AcuI	CTGAAG	1 cut(s)	426
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	2 cut(s)	169, 341
AluI	AGCT	2 cut(s)	169, 341
Alw26I	GTCTC	1 cut(s)	524
AoxI	GGCC	1 cut(s)	93
ApoI	RAATTY	2 cut(s)	236, 416
AsiGI	ACCGGT	1 cut(s)	155
Asp700I	GAANNNNTTC	1 cut(s)	130
AsuHPI	GGTGA	2 cut(s)	170, 337
BccI	CCATC	3 cut(s)	90, 437, 611
BciT130I	CCWGG	1 cut(s)	66
BclI	TGATCA	3 cut(s)	160, 361, 421
BcoDI	GTCTC	1 cut(s)	524
BfaI	CTAG	1 cut(s)	375
Bme1390I	CCNGG	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	280
BsaWI	WCCGGW	1 cut(s)	155
Bse118I	RCCGGY	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	2 cut(s)	109, 603
BseMII	CTCAG	1 cut(s)	218
BshFI	GGCC	1 cut(s)	95
BshTI	ACCGGT	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	524
BsnI	GGCC	1 cut(s)	95
Bsp143I	GATC	3 cut(s)	160, 361, 421
Bsp19I	CCATGG	1 cut(s)	280
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	217
BsrFI	RCCGGY	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	3 cut(s)	160, 361, 421
BssT1I	CCWWGG	1 cut(s)	280
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	48
Bst6I	CTCTTC	2 cut(s)	513, 522
BstDEI	CTNAG	2 cut(s)	204, 342
BstDSI	CCRYGG	1 cut(s)	280
BstF5I	GGATG	2 cut(s)	109, 603
BstKTI	GATC	3 cut(s)	163, 364, 424
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	3 cut(s)	160, 361, 421
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	2 cut(s)	109, 603
BtsI	GCAGTG	1 cut(s)	454
BtsIMutI	CAGTG	1 cut(s)	454
Cfr10I	RCCGGY	1 cut(s)	155
CseI	GACGC	1 cut(s)	259
CsiI	ACCWGGT	1 cut(s)	64
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	2 cut(s)	281, 613
CviJI	RGCY	4 cut(s)	95, 169, 341, 630
CviKI_1	RGCY	4 cut(s)	95, 169, 341, 630
DdeI	CTNAG	2 cut(s)	204, 342
DpnI	GATC	3 cut(s)	162, 363, 423
DpnII	GATC	3 cut(s)	160, 361, 421
Eam1104I	CTCTTC	2 cut(s)	513, 522
EarI	CTCTTC	2 cut(s)	513, 522
Eco130I	CCWWGG	1 cut(s)	280
Eco147I	AGGCCT	1 cut(s)	95
Eco32I	GATATC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	64
EcoRV	GATATC	1 cut(s)	305
EcoT14I	CCWWGG	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	2 cut(s)	284, 616
FaiI	YATR	7 cut(s)	189, 211, 252, 282, 288, 614, 626
FatI	CATG	2 cut(s)	280, 612
FbaI	TGATCA	3 cut(s)	160, 361, 421
FokI	GGATG	2 cut(s)	116, 590
FspBI	CTAG	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	259
Hin1II	CATG	2 cut(s)	284, 616
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	5 cut(s)	131, 328, 371, 401, 532
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	2 cut(s)	170, 337
Hpy166II	GTNNAC	2 cut(s)	44, 274
Hpy188I	TCNGA	6 cut(s)	165, 207, 316, 361, 366, 406
Hpy188III	TCNNGA	4 cut(s)	101, 112, 332, 430
Hpy8I	GTNNAC	2 cut(s)	44, 274
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	1 cut(s)	361
HpyCH4III	ACNGT	1 cut(s)	48
HpyF3I	CTNAG	2 cut(s)	204, 342
Hsp92II	CATG	2 cut(s)	284, 616
Ksp22I	TGATCA	3 cut(s)	160, 361, 421
Kzo9I	GATC	3 cut(s)	160, 361, 421
LmnI	GCTCC	1 cut(s)	267
LpnPI	CCDG	8 cut(s)	51, 77, 78, 86, 109, 169, 410, 620
MabI	ACCWGGT	1 cut(s)	64
MaeI	CTAG	1 cut(s)	375
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	3 cut(s)	162, 363, 423
MboI	GATC	3 cut(s)	160, 361, 421
MboII	GAAGA	9 cut(s)	419, 425, 452, 464, 473, 506, 512, 530, 539
MluCI	AATT	6 cut(s)	236, 351, 416, 547, 594, 632
MlyI	GAGTC	2 cut(s)	337, 526
MmeI	TCCRAC	1 cut(s)	563
MnlI	CCTC	5 cut(s)	25, 100, 213, 328, 508
MroXI	GAANNNNTTC	1 cut(s)	130
MseI	TTAA	2 cut(s)	228, 354
MslI	CAYNNNNRTG	2 cut(s)	186, 279
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
NcoI	CCATGG	1 cut(s)	280
NdeII	GATC	3 cut(s)	160, 361, 421
NlaIII	CATG	2 cut(s)	284, 616
NmuCI	GTSAC	1 cut(s)	380
PceI	AGGCCT	1 cut(s)	95
PdmI	GAANNNNTTC	1 cut(s)	130
PfeI	GAWTC	3 cut(s)	131, 371, 401
PinAI	ACCGGT	1 cut(s)	155
PleI	GAGTC	2 cut(s)	336, 526
PpsI	GAGTC	2 cut(s)	336, 526
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
RseI	CAYNNNNRTG	2 cut(s)	186, 279
SaqAI	TTAA	2 cut(s)	228, 354
Sau3AI	GATC	3 cut(s)	160, 361, 421
SchI	GAGTC	2 cut(s)	337, 526
ScrFI	CCNGG	1 cut(s)	66
SexAI	ACCWGGT	1 cut(s)	64
SmiMI	CAYNNNNRTG	2 cut(s)	186, 279
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	6 cut(s)	236, 351, 416, 547, 594, 632
SseBI	AGGCCT	1 cut(s)	95
SspMI	CTAG	1 cut(s)	375
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	64
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	1 cut(s)	48
TasI	AATT	6 cut(s)	236, 351, 416, 547, 594, 632
TfiI	GAWTC	3 cut(s)	131, 371, 401
Tru1I	TTAA	2 cut(s)	228, 354
Tru9I	TTAA	2 cut(s)	228, 354
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	1 cut(s)	380
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	6 cut(s)	29, 414, 426, 474, 513, 540
TspRI	CASTG	1 cut(s)	454
XapI	RAATTY	2 cut(s)	236, 416
XmnI	GAANNNNTTC	1 cut(s)	130
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.