Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002532.1

Orthogroup ID

OG0010700

Physical Location & Seq

Genomic Coordinates Reverse (-)

46277 .. 49625

Gene Structure 3349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002532.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atggcgaacaagatgaagttttggggtgttgaggtaaagagtggagagtctattgttgttgaacctggtattacccttgtccatctttcacaggcctgtctggatgaggtcaagaaaggaaagggaagtgattctatttcactctttgtgaaaaccgccgaaccaaaggtgagtcttgaggaagctaagaaagaaattaaatctgataagaaggattctagtagtgacgacgacgatgatgatgaatctgaagatgaagagtttgatcaggtcaagagtgtggaagatggcagtgaagatgatgaagaaagtagtgatgatgatgatgatgatgatgatagtgaagatgaagatgatgacagcgaggacgagaatgaagagactccaaataaggttgatgggagcaacaaacgtgctgctgagagtagtaaaacacctgttcaaaagaaggcaaagtttgttactcctgaaaaaactagtggcaagaaaggagctgtccacacagcaactccttacccttcaaaacaggctctcaaaagaccagctaatactgaccagacaaagctgcagagctcaaaatcaagtggtggtggtacattccgttgtgatccctgcaataggtcgtttaactcagatggtgcactgcagagtcatacaaaggcaaagcatggagctgcaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

227

Amino Acids

24.63

Weight (kDa)

4.56

Isoelectric Point (pI)

56.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03740
fragaria_vesca	FvH4_6g17790
malus_domestica	MD12G1017000.v1.1 MD14G1014900.v1.1
prunus_persica	Prupe.7G118500_v2.0.a1 Prupe.7G118500_v2.0.a1
pyrus_communis	pycom12g01380 pycom14g01240
rosa_chinensis	RchiOBHm_Chr3g0472041
rosa_laevigata	RLG00000024110
rosa_multiflora	Rmu_sc0002532.1_g000010
rosa_roxburghii	Rroxscaffold_6G00409300
rosa_rugosa	Rorug03G0121800
rosa_samantha	Rh3AG173400 Rh3AG173500 Rh3BG198900 Rh3CG190000 Rh3CG197400 Rh3DG175600
rosa_wichuraiana	Rw3G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	1 cut(s)	602
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	1 cut(s)	595
AfiI	CCNNNNNNNGG	1 cut(s)	618
AgsI	TTSAA	3 cut(s)	62, 443, 522
AhlI	ACTAGT	1 cut(s)	476
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	6 cut(s)	185, 494, 545, 565, 573, 674
AluI	AGCT	6 cut(s)	185, 494, 545, 565, 573, 674
Alw21I	GWGCWC	2 cut(s)	575, 643
Alw26I	GTCTC	1 cut(s)	374
Alw44I	GTGCAC	1 cut(s)	639
AlwI	GGATC	1 cut(s)	602
AoxI	GGCC	1 cut(s)	93
ApaLI	GTGCAC	1 cut(s)	639
ApeKI	GCWGC	3 cut(s)	416, 565, 674
Asp700I	GAANNNNTTC	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	643
BanII	GRGCYC	1 cut(s)	575
Bbv12I	GWGCWC	2 cut(s)	575, 643
BbvI	GCAGC	3 cut(s)	403, 552, 661
BccI	CCATC	4 cut(s)	90, 281, 392, 629
BciT130I	CCWGG	1 cut(s)	66
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	374
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	2 cut(s)	219, 477
BfmI	CTRYAG	2 cut(s)	566, 644
BisI	GCNGC	3 cut(s)	417, 566, 675
BlsI	GCNGC	3 cut(s)	418, 567, 676
Bme1390I	CCNGG	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	197
BsaXI	ACNNNNNCTCC	2 cut(s)	493, 523
Bsc4I	CCNNNNNNNGG	1 cut(s)	618
BseBI	CCWGG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	618
BseMII	CTCAG	2 cut(s)	411, 645
BseSI	GKGCMC	1 cut(s)	643
BseXI	GCAGC	3 cut(s)	403, 552, 661
BshFI	GGCC	1 cut(s)	95
BsiHKAI	GWGCWC	2 cut(s)	575, 643
BslI	CCNNNNNNNGG	1 cut(s)	618
BsmAI	GTCTC	1 cut(s)	374
BsnI	GGCC	1 cut(s)	95
Bsp1286I	GDGCHC	2 cut(s)	575, 643
Bsp143I	GATC	2 cut(s)	265, 607
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	2 cut(s)	412, 644
BspMAI	CTGCAG	2 cut(s)	570, 648
BspPI	GGATC	1 cut(s)	602
BssMI	GATC	2 cut(s)	265, 607
Bst2UI	CCWGG	1 cut(s)	66
Bst6I	CTCTTC	2 cut(s)	252, 372
BstDEI	CTNAG	3 cut(s)	186, 420, 631
BstENI	CCTNNNNNAGG	1 cut(s)	616
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	2 cut(s)	268, 610
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	2 cut(s)	265, 607
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BstSFI	CTRYAG	2 cut(s)	566, 644
BstSLI	GKGCMC	1 cut(s)	643
BstV1I	GCAGC	3 cut(s)	403, 552, 661
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	109
BtsI	GCAGTG	2 cut(s)	298, 641
BtsIMutI	CAGTG	2 cut(s)	298, 641
CsiI	ACCWGGT	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	594
CviAII	CATG	1 cut(s)	668
CviJI	RGCY	8 cut(s)	95, 185, 494, 530, 545, 565, 573, 674
CviKI_1	RGCY	8 cut(s)	95, 185, 494, 530, 545, 565, 573, 674
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	3 cut(s)	186, 420, 631
DpnI	GATC	2 cut(s)	267, 609
DpnII	GATC	2 cut(s)	265, 607
Eam1104I	CTCTTC	2 cut(s)	252, 372
EarI	CTCTTC	2 cut(s)	252, 372
Ecl136II	GAGCTC	1 cut(s)	573
Eco147I	AGGCCT	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	575
Eco53kI	GAGCTC	1 cut(s)	573
Eco57I	CTGAAG	1 cut(s)	270
EcoICRI	GAGCTC	1 cut(s)	573
EcoNI	CCTNNNNNAGG	1 cut(s)	616
EcoRII	CCWGG	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	575
FaeI	CATG	1 cut(s)	671
FaiI	YATR	2 cut(s)	654, 669
FatI	CATG	1 cut(s)	667
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	3 cut(s)	417, 566, 675
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	575
Fsp4HI	GCNGC	3 cut(s)	417, 566, 675
FspBI	CTAG	2 cut(s)	219, 477
GluI	GCNGC	3 cut(s)	417, 566, 675
HaeIII	GGCC	1 cut(s)	95
Hin1II	CATG	1 cut(s)	671
HinfI	GANTC	7 cut(s)	47, 131, 172, 215, 245, 382, 649
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	499, 641
Hpy188I	TCNGA	3 cut(s)	205, 250, 634
Hpy188III	TCNNGA	5 cut(s)	101, 112, 176, 274, 467
Hpy8I	GTNNAC	2 cut(s)	499, 641
Hpy99I	CGWCG	2 cut(s)	233, 236
HpyAV	CCTTC	3 cut(s)	205, 442, 528
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	5 cut(s)	568, 615, 641, 646, 677
HpyF3I	CTNAG	3 cut(s)	186, 420, 631
HpySE526I	ACGT	1 cut(s)	412
Hsp92II	CATG	1 cut(s)	671
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	265, 607
LmnI	GCTCC	3 cut(s)	402, 491, 671
Lsp1109I	GCAGC	3 cut(s)	403, 552, 661
MabI	ACCWGGT	1 cut(s)	64
MaeI	CTAG	2 cut(s)	219, 477
MaeII	ACGT	1 cut(s)	412
MaeIII	GTNAC	2 cut(s)	224, 460
MalI	GATC	2 cut(s)	267, 609
MboI	GATC	2 cut(s)	265, 607
MboII	GAAGA	8 cut(s)	263, 269, 296, 308, 317, 356, 362, 389
MhlI	GDGCHC	2 cut(s)	575, 643
MluCI	AATT	1 cut(s)	195
MlyI	GAGTC	4 cut(s)	56, 181, 376, 658
MnlI	CCTC	4 cut(s)	25, 100, 172, 358
MroXI	GAANNNNTTC	1 cut(s)	130
MseI	TTAA	2 cut(s)	198, 627
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
NdeII	GATC	2 cut(s)	265, 607
NlaIII	CATG	1 cut(s)	671
NmuCI	GTSAC	1 cut(s)	224
PceI	AGGCCT	1 cut(s)	95
PdmI	GAANNNNTTC	1 cut(s)	130
PfeI	GAWTC	3 cut(s)	131, 215, 245
PkrI	GCNGC	3 cut(s)	418, 567, 676
PleI	GAGTC	4 cut(s)	55, 180, 376, 657
PpsI	GAGTC	4 cut(s)	55, 180, 376, 657
Psp124BI	GAGCTC	1 cut(s)	575
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PstI	CTGCAG	2 cut(s)	570, 648
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
SacI	GAGCTC	1 cut(s)	575
SaqAI	TTAA	2 cut(s)	198, 627
SatI	GCNGC	3 cut(s)	417, 566, 675
Sau3AI	GATC	2 cut(s)	265, 607
SchI	GAGTC	4 cut(s)	56, 181, 376, 658
ScrFI	CCNGG	1 cut(s)	66
SduI	GDGCHC	2 cut(s)	575, 643
SexAI	ACCWGGT	1 cut(s)	64
SfcI	CTRYAG	2 cut(s)	566, 644
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SpeI	ACTAGT	1 cut(s)	476
Sse9I	AATT	1 cut(s)	195
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	1 cut(s)	156
SspMI	CTAG	2 cut(s)	219, 477
SstI	GAGCTC	1 cut(s)	575
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	64
TaiI	ACGT	1 cut(s)	415
TasI	AATT	1 cut(s)	195
TfiI	GAWTC	3 cut(s)	131, 215, 245
Tru1I	TTAA	2 cut(s)	198, 627
Tru9I	TTAA	2 cut(s)	198, 627
TscAI	CASTG	2 cut(s)	298, 648
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	3 cut(s)	416, 565, 674
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	6 cut(s)	29, 258, 270, 318, 363, 390
TspGWI	ACGGA	1 cut(s)	590
TspRI	CASTG	2 cut(s)	298, 648
VneI	GTGCAC	1 cut(s)	639
XagI	CCTNNNNNAGG	1 cut(s)	616
XmnI	GAANNNNTTC	1 cut(s)	130
XspI	CTAG	2 cut(s)	219, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.