RH3CG190000

No description available

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0010700
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG190000.1

Sequence Viewer

Length: 837 bp
ATGGCGAACAAGATGAAGTTTTGGGGTGTTGAGGTAAAGAGTGGACAGTCTGTTGTTGTTGAACCTGGTATTACCCTTGTCCATCTTTCACAGGCCTGTCTGGATGAGGTCAAGAAAGGAAAGGGAAGTGATTCTATTTCACTCTTTGTGAAAACCGGTGATCAGAAGCTTGTTATTGGACATCTTTATGCTGATAAACTACCTCAGATATATTTTGATATTGTGTTTAATAAAAAATTTGTGCTATCTCATAATGGGAAAAGTGGGAGCGTCCACTTCCATGGATATATTGCTAATACGGGGACTTTTGGTACTGCCGAACCAAAGGTGAGTCTTGAGGAAGCTAAGAAAGAAATTAAATCTGATCAGAAGGATTCTAGTAGTGACGACGATGATGATGATGAATCTGAAGATGAAGAATTTGATCAGGTCAAGAGTGTGGAAGATGGCAGTGAAGATGATGAAGAAAGTAGTGATGATGATGATGATGATAGTGAAGATGAAGATGATGACAGCGAGGAAGAGAATGAAGAGACTCCAAATAAGGTTGATGGGAGCAACAAACGTGCTGCTGAGAGTAGTAAAACACCTGTTCAAAAGAAGGCAAAGTTTGTTACTCCTGAAAAAACTAGTGGCAAGAAAGGAGCTGTCCACACAGCAACTCCTTACCCTTCAAAACAGGCTCTCAAAAGACCAGCTAATACTGACCAGACAAAGCTGCAGAGCTCAAAATCAAGTGGTGGTGGTACATTCCGTTGTGATCCCTGCAATAGGTCGTTTAACTCAGATGGTGCACTGCAGAGTCATACAAAGGCAAAGCATGGAGCTGCAAAGTGA

Protein Analysis

278

Amino Acids

30.26

Weight (kDa)

4.88

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 7 - 97 3.4e-15 Nucleoplasmin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010700)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03740
fragaria_vesca FvH4_6g17790
malus_domestica MD12G1017000.v1.1 MD14G1014900.v1.1
prunus_persica Prupe.7G118500_v2.0.a1 Prupe.7G118500_v2.0.a1
pyrus_communis pycom12g01380 pycom14g01240
rosa_chinensis RchiOBHm_Chr3g0472041
rosa_laevigata RLG00000024110
rosa_multiflora Rmu_sc0002532.1_g000010
rosa_roxburghii Rroxscaffold_6G00409300
rosa_rugosa Rorug03G0121800
rosa_samantha Rh3AG173400 Rh3AG173500 Rh3BG198900 Rh3CG190000 Rh3CG197400 Rh3DG175600
rosa_wichuraiana Rw3G016710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 755
AcsI RAATTY 2 cut(s) 236, 419
AcuI CTGAAG 1 cut(s) 429
AfaI GTAC 2 cut(s) 313, 748
AfiI CCNNNNNNNGG 1 cut(s) 771
AgeI ACCGGT 1 cut(s) 155
AgsI TTSAA 3 cut(s) 62, 596, 675
AhlI ACTAGT 1 cut(s) 629
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 7 cut(s) 169, 344, 647, 698, 718, 726, 827
AluI AGCT 7 cut(s) 169, 344, 647, 698, 718, 726, 827
Alw21I GWGCWC 2 cut(s) 728, 796
Alw26I GTCTC 1 cut(s) 527
Alw44I GTGCAC 1 cut(s) 792
AlwI GGATC 1 cut(s) 755
AoxI GGCC 1 cut(s) 93
ApaLI GTGCAC 1 cut(s) 792
ApeKI GCWGC 3 cut(s) 569, 718, 827
ApoI RAATTY 2 cut(s) 236, 419
AsiGI ACCGGT 1 cut(s) 155
Asp700I GAANNNNTTC 1 cut(s) 130
AsuHPI GGTGA 2 cut(s) 170, 340
BaeGI GKGCMC 1 cut(s) 796
BanII GRGCYC 1 cut(s) 728
Bbv12I GWGCWC 2 cut(s) 728, 796
BbvI GCAGC 3 cut(s) 556, 705, 814
BccI CCATC 4 cut(s) 90, 440, 545, 782
BciT130I CCWGG 1 cut(s) 66
BclI TGATCA 3 cut(s) 160, 364, 424
BcoDI GTCTC 1 cut(s) 527
BcuI ACTAGT 1 cut(s) 629
BfaI CTAG 2 cut(s) 378, 630
BfmI CTRYAG 2 cut(s) 719, 797
BisI GCNGC 3 cut(s) 570, 719, 828
BlsI GCNGC 3 cut(s) 571, 720, 829
Bme1390I CCNGG 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 280
BsaWI WCCGGW 1 cut(s) 155
BsaXI ACNNNNNCTCC 2 cut(s) 646, 676
Bsc4I CCNNNNNNNGG 1 cut(s) 771
Bse118I RCCGGY 1 cut(s) 155
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 280
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 771
BseMII CTCAG 3 cut(s) 218, 564, 798
BseSI GKGCMC 1 cut(s) 796
BseXI GCAGC 3 cut(s) 556, 705, 814
BshFI GGCC 1 cut(s) 95
BshTI ACCGGT 1 cut(s) 155
BsiHKAI GWGCWC 2 cut(s) 728, 796
BsiSI CCGG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 316
BslI CCNNNNNNNGG 1 cut(s) 771
BsmAI GTCTC 1 cut(s) 527
BsmFI GGGAC 1 cut(s) 316
BsnI GGCC 1 cut(s) 95
Bsp1286I GDGCHC 2 cut(s) 728, 796
Bsp143I GATC 4 cut(s) 160, 364, 424, 760
Bsp19I CCATGG 1 cut(s) 280
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 3 cut(s) 217, 565, 797
BspMAI CTGCAG 2 cut(s) 723, 801
BspPI GGATC 1 cut(s) 755
BsrFI RCCGGY 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 4 cut(s) 160, 364, 424, 760
BssT1I CCWWGG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 48
Bst6I CTCTTC 2 cut(s) 516, 525
BstDEI CTNAG 4 cut(s) 204, 345, 573, 784
BstDSI CCRYGG 1 cut(s) 280
BstENI CCTNNNNNAGG 1 cut(s) 769
BstF5I GGATG 1 cut(s) 109
BstKTI GATC 4 cut(s) 163, 367, 427, 763
BstMAI GTCTC 1 cut(s) 527
BstMBI GATC 4 cut(s) 160, 364, 424, 760
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 64
BstSFI CTRYAG 2 cut(s) 719, 797
BstSLI GKGCMC 1 cut(s) 796
BstV1I GCAGC 3 cut(s) 556, 705, 814
BstXI CCANNNNNNTGG 1 cut(s) 281
BsuRI GGCC 1 cut(s) 95
BtgI CCRYGG 1 cut(s) 280
BtsCI GGATG 1 cut(s) 109
BtsI GCAGTG 2 cut(s) 457, 794
BtsIMutI CAGTG 2 cut(s) 457, 794
Cfr10I RCCGGY 1 cut(s) 155
CseI GACGC 1 cut(s) 259
CsiI ACCWGGT 1 cut(s) 64
Csp6I GTAC 2 cut(s) 312, 747
CspAI ACCGGT 1 cut(s) 155
CviAII CATG 2 cut(s) 281, 821
CviJI RGCY 9 cut(s) 95, 169, 344, 647, 683, 698, 718, 726, 827
CviKI_1 RGCY 9 cut(s) 95, 169, 344, 647, 683, 698, 718, 726, 827
CviQI GTAC 2 cut(s) 312, 747
DdeI CTNAG 4 cut(s) 204, 345, 573, 784
DpnI GATC 4 cut(s) 162, 366, 426, 762
DpnII GATC 4 cut(s) 160, 364, 424, 760
Eam1104I CTCTTC 2 cut(s) 516, 525
EarI CTCTTC 2 cut(s) 516, 525
Ecl136II GAGCTC 1 cut(s) 726
Eco130I CCWWGG 1 cut(s) 280
Eco147I AGGCCT 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 728
Eco53kI GAGCTC 1 cut(s) 726
Eco57I CTGAAG 1 cut(s) 429
EcoICRI GAGCTC 1 cut(s) 726
EcoNI CCTNNNNNAGG 1 cut(s) 769
EcoRII CCWGG 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 280
EcoT38I GRGCYC 1 cut(s) 728
ErhI CCWWGG 1 cut(s) 280
FaeI CATG 2 cut(s) 284, 824
FaiI YATR 7 cut(s) 189, 211, 252, 282, 288, 807, 822
FaqI GGGAC 1 cut(s) 316
FatI CATG 2 cut(s) 280, 820
FbaI TGATCA 3 cut(s) 160, 364, 424
Fnu4HI GCNGC 3 cut(s) 570, 719, 828
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 728
Fsp4HI GCNGC 3 cut(s) 570, 719, 828
FspBI CTAG 2 cut(s) 378, 630
GluI GCNGC 3 cut(s) 570, 719, 828
HaeIII GGCC 1 cut(s) 95
HapII CCGG 1 cut(s) 156
HgaI GACGC 1 cut(s) 259
Hin1II CATG 2 cut(s) 284, 824
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 6 cut(s) 131, 331, 374, 404, 535, 802
HpaII CCGG 1 cut(s) 156
HphI GGTGA 2 cut(s) 170, 340
Hpy166II GTNNAC 4 cut(s) 44, 274, 652, 794
Hpy188I TCNGA 6 cut(s) 165, 207, 364, 369, 409, 787
Hpy188III TCNNGA 5 cut(s) 101, 112, 335, 433, 620
Hpy8I GTNNAC 4 cut(s) 44, 274, 652, 794
Hpy99I CGWCG 1 cut(s) 392
HpyAV CCTTC 3 cut(s) 364, 595, 681
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4IV ACGT 1 cut(s) 565
HpyCH4V TGCA 5 cut(s) 721, 768, 794, 799, 830
HpyF3I CTNAG 4 cut(s) 204, 345, 573, 784
HpySE526I ACGT 1 cut(s) 565
Hsp92II CATG 2 cut(s) 284, 824
Ksp22I TGATCA 3 cut(s) 160, 364, 424
Kzo9I GATC 4 cut(s) 160, 364, 424, 760
LmnI GCTCC 4 cut(s) 267, 555, 644, 824
Lsp1109I GCAGC 3 cut(s) 556, 705, 814
MabI ACCWGGT 1 cut(s) 64
MaeI CTAG 2 cut(s) 378, 630
MaeII ACGT 1 cut(s) 565
MaeIII GTNAC 2 cut(s) 383, 613
MalI GATC 4 cut(s) 162, 366, 426, 762
MboI GATC 4 cut(s) 160, 364, 424, 760
MboII GAAGA 9 cut(s) 422, 428, 455, 467, 476, 509, 515, 533, 542
MhlI GDGCHC 2 cut(s) 728, 796
MluCI AATT 3 cut(s) 236, 354, 419
MlyI GAGTC 3 cut(s) 340, 529, 811
MnlI CCTC 5 cut(s) 25, 100, 213, 331, 511
MroXI GAANNNNTTC 1 cut(s) 130
MseI TTAA 3 cut(s) 228, 357, 780
MslI CAYNNNNRTG 2 cut(s) 186, 279
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
NcoI CCATGG 1 cut(s) 280
NdeII GATC 4 cut(s) 160, 364, 424, 760
NlaIII CATG 2 cut(s) 284, 824
NmuCI GTSAC 1 cut(s) 383
PceI AGGCCT 1 cut(s) 95
PdmI GAANNNNTTC 1 cut(s) 130
PfeI GAWTC 3 cut(s) 131, 374, 404
PinAI ACCGGT 1 cut(s) 155
PkrI GCNGC 3 cut(s) 571, 720, 829
PleI GAGTC 3 cut(s) 339, 529, 810
PpsI GAGTC 3 cut(s) 339, 529, 810
Psp124BI GAGCTC 1 cut(s) 728
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PstI CTGCAG 2 cut(s) 723, 801
RsaI GTAC 2 cut(s) 313, 748
RsaNI GTAC 2 cut(s) 312, 747
RseI CAYNNNNRTG 2 cut(s) 186, 279
SacI GAGCTC 1 cut(s) 728
SaqAI TTAA 3 cut(s) 228, 357, 780
SatI GCNGC 3 cut(s) 570, 719, 828
Sau3AI GATC 4 cut(s) 160, 364, 424, 760
SchI GAGTC 3 cut(s) 340, 529, 811
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 2 cut(s) 728, 796
SexAI ACCWGGT 1 cut(s) 64
SfcI CTRYAG 2 cut(s) 719, 797
SmiMI CAYNNNNRTG 2 cut(s) 186, 279
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
SpeI ACTAGT 1 cut(s) 629
Sse9I AATT 3 cut(s) 236, 354, 419
SseBI AGGCCT 1 cut(s) 95
SspMI CTAG 2 cut(s) 378, 630
SstI GAGCTC 1 cut(s) 728
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 64
StyI CCWWGG 1 cut(s) 280
TaaI ACNGT 1 cut(s) 48
TaiI ACGT 1 cut(s) 568
TasI AATT 3 cut(s) 236, 354, 419
TfiI GAWTC 3 cut(s) 131, 374, 404
Tru1I TTAA 3 cut(s) 228, 357, 780
Tru9I TTAA 3 cut(s) 228, 357, 780
TscAI CASTG 2 cut(s) 457, 801
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 3 cut(s) 569, 718, 827
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 6 cut(s) 29, 417, 429, 477, 516, 543
TspGWI ACGGA 1 cut(s) 743
TspRI CASTG 2 cut(s) 457, 801
VneI GTGCAC 1 cut(s) 792
XagI CCTNNNNNAGG 1 cut(s) 769
XapI RAATTY 2 cut(s) 236, 419
XmnI GAANNNNTTC 1 cut(s) 130
XspI CTAG 2 cut(s) 378, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.