Rh3DG175600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0010700
Physical Location & Seq
Forward (+)
15577529 .. 15581484
3956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG175600.1

Sequence Viewer

Length: 693 bp
ATGGCGAACAAGATGAAGTTTTGGGGTGTTGAGGTAAAGAGTGGACAGTCTGTTGTTGTTGAACCTGGTATTACCCTTGTCCATCTTTCACAGGCCTGTCTGGATGAGGTCAAGAAAGGAAAGGGAAGTGATTCTATTTCACTCTTTGTGAAAACCGGTGATCAGAAGCTTGTTATTGGACATCTTTATGCTGATAAACTACCTCAGATATATTTTGATATCGTGTTTAATAAAAAATTTGTGCTATCTCATAATGGGAAAAGTGGGAGCGTCCACTTCCATGGATATATTGCTAATACGGGGACTTTTGGTACTGCCGAACCAAAGGTGAGTCTTGAGGAAGCTAAGAAAGAAATTAAATCTGATCAGAAGGATTCTAGTAGTGACGACGATGATGATGATGAATCTGAAGATGAAGAGTTTGATCAGGTCAAGAGTGTGGAAGATGGCAGTGAAGATGATGAAGAAAGCAGTGATGATGATGATGATGATGATGATAGTGAAGATGAAGATGATGACAGTGAGGAAGAGAATGAAGAGACTCCAAATAAGTCTGATTCCTTGACAATGAAATTGTTCAAGGTTGATGGGAGCAACAAACGTGCTGCTGAGAGTAGTAAAACACCTGTTCAAAAGAAGGCAAAGTTTGTTACTCCTGAAAAAACTAGTGAGTTTGTTGTCTTCCTTTATTAA

Protein Analysis

230

Amino Acids

25.54

Weight (kDa)

4.37

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 7 - 97 2.3e-15 Nucleoplasmin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010700)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03740
fragaria_vesca FvH4_6g17790
malus_domestica MD12G1017000.v1.1 MD14G1014900.v1.1
prunus_persica Prupe.7G118500_v2.0.a1 Prupe.7G118500_v2.0.a1
pyrus_communis pycom12g01380 pycom14g01240
rosa_chinensis RchiOBHm_Chr3g0472041
rosa_laevigata RLG00000024110
rosa_multiflora Rmu_sc0002532.1_g000010
rosa_roxburghii Rroxscaffold_6G00409300
rosa_rugosa Rorug03G0121800
rosa_samantha Rh3AG173400 Rh3AG173500 Rh3BG198900 Rh3CG190000 Rh3CG197400 Rh3DG175600
rosa_wichuraiana Rw3G016710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 429
AfaI GTAC 1 cut(s) 313
AgeI ACCGGT 1 cut(s) 155
AgsI TTSAA 3 cut(s) 62, 580, 632
AhlI ACTAGT 1 cut(s) 665
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 2 cut(s) 169, 344
AluI AGCT 2 cut(s) 169, 344
Alw26I GTCTC 1 cut(s) 533
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 605
ApoI RAATTY 1 cut(s) 236
AsiGI ACCGGT 1 cut(s) 155
Asp700I GAANNNNTTC 2 cut(s) 130, 575
AsuHPI GGTGA 2 cut(s) 170, 340
BbsI GAAGAC 1 cut(s) 673
BbvI GCAGC 1 cut(s) 592
BccI CCATC 3 cut(s) 90, 440, 581
BciT130I CCWGG 1 cut(s) 66
BclI TGATCA 3 cut(s) 160, 364, 424
BcoDI GTCTC 1 cut(s) 533
BcuI ACTAGT 1 cut(s) 665
BfaI CTAG 2 cut(s) 378, 666
BisI GCNGC 1 cut(s) 606
BlsI GCNGC 1 cut(s) 607
Bme1390I CCNGG 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 673
BpuEI CTTGAG 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 280
BsaWI WCCGGW 1 cut(s) 155
Bse118I RCCGGY 1 cut(s) 155
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 280
BseGI GGATG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 218, 600
BseXI GCAGC 1 cut(s) 592
BshFI GGCC 1 cut(s) 95
BshTI ACCGGT 1 cut(s) 155
BsiSI CCGG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 316
BsmAI GTCTC 1 cut(s) 533
BsmFI GGGAC 1 cut(s) 316
BsnI GGCC 1 cut(s) 95
Bsp143I GATC 3 cut(s) 160, 364, 424
Bsp19I CCATGG 1 cut(s) 280
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 2 cut(s) 217, 601
BsrFI RCCGGY 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 3 cut(s) 160, 364, 424
BssT1I CCWWGG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 2 cut(s) 48, 521
Bst6I CTCTTC 3 cut(s) 411, 522, 531
BstDEI CTNAG 3 cut(s) 204, 345, 609
BstDSI CCRYGG 1 cut(s) 280
BstF5I GGATG 1 cut(s) 109
BstKTI GATC 3 cut(s) 163, 367, 427
BstMAI GTCTC 1 cut(s) 533
BstMBI GATC 3 cut(s) 160, 364, 424
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 592
BstV2I GAAGAC 1 cut(s) 673
BstXI CCANNNNNNTGG 1 cut(s) 281
BsuRI GGCC 1 cut(s) 95
BtgI CCRYGG 1 cut(s) 280
BtsCI GGATG 1 cut(s) 109
BtsI GCAGTG 2 cut(s) 457, 478
BtsIMutI CAGTG 3 cut(s) 457, 478, 526
Cfr10I RCCGGY 1 cut(s) 155
CseI GACGC 1 cut(s) 259
CsiI ACCWGGT 1 cut(s) 64
Csp6I GTAC 1 cut(s) 312
CspAI ACCGGT 1 cut(s) 155
CviAII CATG 1 cut(s) 281
CviJI RGCY 3 cut(s) 95, 169, 344
CviKI_1 RGCY 3 cut(s) 95, 169, 344
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 3 cut(s) 204, 345, 609
DpnI GATC 3 cut(s) 162, 366, 426
DpnII GATC 3 cut(s) 160, 364, 424
Eam1104I CTCTTC 3 cut(s) 411, 522, 531
EarI CTCTTC 3 cut(s) 411, 522, 531
Eco130I CCWWGG 1 cut(s) 280
Eco147I AGGCCT 1 cut(s) 95
Eco32I GATATC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 429
EcoRII CCWGG 1 cut(s) 64
EcoRV GATATC 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 280
FaeI CATG 1 cut(s) 284
FaiI YATR 5 cut(s) 189, 211, 252, 282, 288
FaqI GGGAC 1 cut(s) 316
FatI CATG 1 cut(s) 280
FbaI TGATCA 3 cut(s) 160, 364, 424
Fnu4HI GCNGC 1 cut(s) 606
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 606
FspBI CTAG 2 cut(s) 378, 666
GluI GCNGC 1 cut(s) 606
HaeIII GGCC 1 cut(s) 95
HapII CCGG 1 cut(s) 156
HgaI GACGC 1 cut(s) 259
Hin1II CATG 1 cut(s) 284
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 6 cut(s) 131, 331, 374, 404, 541, 557
HpaII CCGG 1 cut(s) 156
HphI GGTGA 2 cut(s) 170, 340
Hpy166II GTNNAC 2 cut(s) 44, 274
Hpy188I TCNGA 6 cut(s) 165, 207, 364, 369, 409, 556
Hpy188III TCNNGA 5 cut(s) 101, 112, 335, 433, 656
Hpy8I GTNNAC 2 cut(s) 44, 274
Hpy99I CGWCG 1 cut(s) 392
HpyAV CCTTC 2 cut(s) 364, 631
HpyCH4III ACNGT 2 cut(s) 48, 521
HpyCH4IV ACGT 1 cut(s) 601
HpyF3I CTNAG 3 cut(s) 204, 345, 609
HpySE526I ACGT 1 cut(s) 601
Hsp92II CATG 1 cut(s) 284
Ksp22I TGATCA 3 cut(s) 160, 364, 424
Kzo9I GATC 3 cut(s) 160, 364, 424
LmnI GCTCC 2 cut(s) 267, 591
LpnPI CCDG 9 cut(s) 51, 77, 78, 86, 109, 169, 413, 639, 669
Lsp1109I GCAGC 1 cut(s) 592
MabI ACCWGGT 1 cut(s) 64
MaeI CTAG 2 cut(s) 378, 666
MaeII ACGT 1 cut(s) 601
MaeIII GTNAC 2 cut(s) 383, 649
MalI GATC 3 cut(s) 162, 366, 426
MboI GATC 3 cut(s) 160, 364, 424
MluCI AATT 3 cut(s) 236, 354, 572
MlyI GAGTC 2 cut(s) 340, 535
MnlI CCTC 5 cut(s) 25, 100, 213, 331, 517
MroXI GAANNNNTTC 2 cut(s) 130, 575
MseI TTAA 3 cut(s) 228, 357, 691
MslI CAYNNNNRTG 2 cut(s) 186, 279
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
NcoI CCATGG 1 cut(s) 280
NdeII GATC 3 cut(s) 160, 364, 424
NlaIII CATG 1 cut(s) 284
NmuCI GTSAC 1 cut(s) 383
PceI AGGCCT 1 cut(s) 95
PdmI GAANNNNTTC 2 cut(s) 130, 575
PfeI GAWTC 4 cut(s) 131, 374, 404, 557
PinAI ACCGGT 1 cut(s) 155
PkrI GCNGC 1 cut(s) 607
PleI GAGTC 2 cut(s) 339, 535
PpsI GAGTC 2 cut(s) 339, 535
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
RseI CAYNNNNRTG 2 cut(s) 186, 279
SaqAI TTAA 3 cut(s) 228, 357, 691
SatI GCNGC 1 cut(s) 606
Sau3AI GATC 3 cut(s) 160, 364, 424
SchI GAGTC 2 cut(s) 340, 535
ScrFI CCNGG 1 cut(s) 66
SexAI ACCWGGT 1 cut(s) 64
SmiMI CAYNNNNRTG 2 cut(s) 186, 279
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
SpeI ACTAGT 1 cut(s) 665
Sse9I AATT 3 cut(s) 236, 354, 572
SseBI AGGCCT 1 cut(s) 95
SspMI CTAG 2 cut(s) 378, 666
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 64
StyI CCWWGG 1 cut(s) 280
TaaI ACNGT 2 cut(s) 48, 521
TaiI ACGT 1 cut(s) 604
TasI AATT 3 cut(s) 236, 354, 572
TfiI GAWTC 4 cut(s) 131, 374, 404, 557
Tru1I TTAA 3 cut(s) 228, 357, 691
Tru9I TTAA 3 cut(s) 228, 357, 691
TscAI CASTG 3 cut(s) 457, 478, 526
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 1 cut(s) 605
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 7 cut(s) 29, 417, 429, 477, 522, 549, 584
TspRI CASTG 3 cut(s) 457, 478, 526
XapI RAATTY 1 cut(s) 236
XmnI GAANNNNTTC 2 cut(s) 130, 575
XspI CTAG 2 cut(s) 378, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.