FvH4_6g17790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010700
Physical Location & Seq
Reverse (-)
11672660 .. 11676585
3926 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17790.t1

Sequence Viewer

Length: 810 bp
ATGGCCAGCAAGATGAGGTTTTGGGGTGTTGAGGTAAAGAGTGGAGAGTCTGTTGTTGTTGAACCTGGTACTACCTTAGTCCATCTTTCACAGGCCTGTCTGGGTGAGGTCAAGAAAGGAAAGGGAAGTGATTCTATTTCACTCTTTGTGAAAATCGGTGATCAGAAGCTTGTTATTGGACATCTTTATGCTGAAAAAATACCTCAGTTATATTTTGATCTTGTGTTTGATAAAAAGTTTGTGCTATCTCATGATGGGAAAAGTGGGAGTGTCCACATCCATGGATATATTGCTAATACAGGGACTTTCGTTACTGCTGAACCAAAGGTGAGTCTTGAGGAAGCTAAGAATGAAATTAAATCCGATCATAAGGATTCTAGTAGTGATGATGATGATGATGATGATGATGATGAAGAGTTTGATCAGGTCAAGAGTGTGGAAGATGGCAGTGAAGATGATGATCAAAGTAGTGATGATGATGATGATAGTGAAGAAGAGCATGAAGAGACTCCAAATAAGGTCGAGGGGAGCAACAAGCGTGCTGCTGAGAGTAGTAAAACACCTGTTCAAAAGAAGGCAAAGTTTGTTACTCCCGAGAAAACTGGTGGCAAGAAAGGAGCTGTCCACACAGCAACTCCTTACCCTTCAAAACAGGCTGTGAAGAAACCTGCAAATTCTGACCAGACAAAGCAGCAGAGTTCAAACTCTAGTGGCATTGGTGCATTCCGTTGCAACCCCTGCAACAGGTCGTTTAACTCAGATGGTGCACTGCAAAGTCATACAAAGGCAAAGCATGGAGCTGCAAAGTAA

Protein Analysis

270

Amino Acids

29.15

Weight (kDa)

5.25

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 7 - 97 3e-16 Nucleoplasmin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010700)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03740
fragaria_vesca FvH4_6g17790
malus_domestica MD12G1017000.v1.1 MD14G1014900.v1.1
prunus_persica Prupe.7G118500_v2.0.a1 Prupe.7G118500_v2.0.a1
pyrus_communis pycom12g01380 pycom14g01240
rosa_chinensis RchiOBHm_Chr3g0472041
rosa_laevigata RLG00000024110
rosa_multiflora Rmu_sc0002532.1_g000010
rosa_roxburghii Rroxscaffold_6G00409300
rosa_rugosa Rorug03G0121800
rosa_samantha Rh3AG173400 Rh3AG173500 Rh3BG198900 Rh3CG190000 Rh3CG197400 Rh3DG175600
rosa_wichuraiana Rw3G016710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 676
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 673
AfaI GTAC 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 744
AgsI TTSAA 4 cut(s) 62, 569, 648, 702
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 4 cut(s) 169, 344, 620, 800
AluI AGCT 4 cut(s) 169, 344, 620, 800
Alw21I GWGCWC 1 cut(s) 769
Alw26I GTCTC 1 cut(s) 500
Alw44I GTGCAC 1 cut(s) 765
Ama87I CYCGRG 1 cut(s) 593
AoxI GGCC 2 cut(s) 3, 93
ApaLI GTGCAC 1 cut(s) 765
ApeKI GCWGC 3 cut(s) 542, 691, 800
ApoI RAATTY 1 cut(s) 673
Asp700I GAANNNNTTC 1 cut(s) 130
AsuHPI GGTGA 3 cut(s) 116, 170, 340
AvaI CYCGRG 1 cut(s) 593
BaeGI GKGCMC 1 cut(s) 769
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 769
BbvI GCAGC 3 cut(s) 529, 703, 787
BccI CCATC 4 cut(s) 90, 248, 437, 755
BciT130I CCWGG 1 cut(s) 66
BclI TGATCA 3 cut(s) 160, 421, 460
BcoDI GTCTC 1 cut(s) 500
BfaI CTAG 2 cut(s) 378, 708
BfuAI ACCTGC 1 cut(s) 676
BisI GCNGC 3 cut(s) 543, 692, 801
BlsI GCNGC 3 cut(s) 544, 693, 802
Bme1390I CCNGG 1 cut(s) 66
BmeT110I CYCGRG 1 cut(s) 593
BmrFI CCNGG 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 356
BsaBI GATNNNNATC 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 280
BsaXI ACNNNNNCTCC 4 cut(s) 36, 66, 619, 649
Bsc4I CCNNNNNNNGG 1 cut(s) 744
Bse1I ACTGG 1 cut(s) 607
Bse8I GATNNNNATC 1 cut(s) 459
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 280
BseGI GGATG 1 cut(s) 276
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 1 cut(s) 744
BseMII CTCAG 3 cut(s) 218, 537, 771
BseNI ACTGG 1 cut(s) 607
BseSI GKGCMC 1 cut(s) 769
BseXI GCAGC 3 cut(s) 529, 703, 787
BshFI GGCC 2 cut(s) 5, 95
BsiHKAI GWGCWC 1 cut(s) 769
BsiHKCI CYCGRG 1 cut(s) 593
BslFI GGGAC 1 cut(s) 316
BslI CCNNNNNNNGG 1 cut(s) 744
BsmAI GTCTC 1 cut(s) 500
BsmFI GGGAC 1 cut(s) 316
BsmI GAATGC 1 cut(s) 722
BsnI GGCC 2 cut(s) 5, 95
BsoBI CYCGRG 1 cut(s) 593
Bsp1286I GDGCHC 1 cut(s) 769
Bsp143I GATC 5 cut(s) 160, 217, 364, 421, 460
Bsp19I CCATGG 1 cut(s) 280
BspANI GGCC 2 cut(s) 5, 95
BspCNI CTCAG 3 cut(s) 217, 538, 770
BspHI TCATGA 1 cut(s) 250
BspMI ACCTGC 1 cut(s) 676
BspQI GCTCTTC 1 cut(s) 489
BsrI ACTGG 1 cut(s) 607
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 5 cut(s) 160, 217, 364, 421, 460
BssT1I CCWWGG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 66
Bst6I CTCTTC 3 cut(s) 408, 489, 498
BstAPI GCANNNNNTGC 1 cut(s) 738
BstC8I GCNNGC 2 cut(s) 7, 540
BstDEI CTNAG 5 cut(s) 76, 204, 345, 546, 757
BstDSI CCRYGG 1 cut(s) 280
BstENI CCTNNNNNAGG 1 cut(s) 742
BstF5I GGATG 1 cut(s) 276
BstKTI GATC 5 cut(s) 163, 220, 367, 424, 463
BstMAI GTCTC 1 cut(s) 500
BstMBI GATC 5 cut(s) 160, 217, 364, 421, 460
BstMWI GCNNNNNNNGC 1 cut(s) 738
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 64
BstSLI GKGCMC 1 cut(s) 769
BstV1I GCAGC 3 cut(s) 529, 703, 787
BstXI CCANNNNNNTGG 1 cut(s) 281
BsuRI GGCC 2 cut(s) 5, 95
BtgI CCRYGG 1 cut(s) 280
BtsCI GGATG 1 cut(s) 276
BtsI GCAGTG 2 cut(s) 454, 767
BtsIMutI CAGTG 2 cut(s) 454, 767
BveI ACCTGC 1 cut(s) 676
Cac8I GCNNGC 2 cut(s) 7, 540
CciI TCATGA 1 cut(s) 250
CsiI ACCWGGT 1 cut(s) 64
Csp6I GTAC 1 cut(s) 69
CviAII CATG 4 cut(s) 251, 281, 500, 794
CviJI RGCY 7 cut(s) 5, 95, 169, 344, 620, 656, 800
CviKI_1 RGCY 7 cut(s) 5, 95, 169, 344, 620, 656, 800
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 5 cut(s) 76, 204, 345, 546, 757
DpnI GATC 5 cut(s) 162, 219, 366, 423, 462
DpnII GATC 5 cut(s) 160, 217, 364, 421, 460
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 408, 489, 498
EarI CTCTTC 3 cut(s) 408, 489, 498
Eco130I CCWWGG 1 cut(s) 280
Eco147I AGGCCT 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 593
EcoNI CCTNNNNNAGG 1 cut(s) 742
EcoRII CCWGG 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 280
FaeI CATG 4 cut(s) 254, 284, 503, 797
FaiI YATR 9 cut(s) 189, 211, 252, 282, 288, 369, 501, 780, 795
FaqI GGGAC 1 cut(s) 316
FatI CATG 4 cut(s) 250, 280, 499, 793
FbaI TGATCA 3 cut(s) 160, 421, 460
Fnu4HI GCNGC 3 cut(s) 543, 692, 801
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 3 cut(s) 543, 692, 801
FspBI CTAG 2 cut(s) 378, 708
GluI GCNGC 3 cut(s) 543, 692, 801
HaeIII GGCC 2 cut(s) 5, 95
Hin1II CATG 4 cut(s) 254, 284, 503, 797
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 5 cut(s) 47, 131, 331, 374, 508
HphI GGTGA 3 cut(s) 116, 170, 340
Hpy166II GTNNAC 3 cut(s) 274, 625, 767
Hpy188I TCNGA 4 cut(s) 165, 364, 679, 760
Hpy188III TCNNGA 5 cut(s) 112, 251, 335, 430, 593
Hpy8I GTNNAC 3 cut(s) 274, 625, 767
HpyAV CCTTC 2 cut(s) 568, 654
HpyCH4V TGCA 7 cut(s) 671, 722, 732, 741, 767, 772, 803
HpyF10VI GCNNNNNNNGC 1 cut(s) 738
HpyF3I CTNAG 5 cut(s) 76, 204, 345, 546, 757
Hsp92II CATG 4 cut(s) 254, 284, 503, 797
Ksp22I TGATCA 3 cut(s) 160, 421, 460
Kzo9I GATC 5 cut(s) 160, 217, 364, 421, 460
LguI GCTCTTC 1 cut(s) 489
LmnI GCTCC 3 cut(s) 528, 617, 797
Lsp1109I GCAGC 3 cut(s) 529, 703, 787
MabI ACCWGGT 1 cut(s) 64
MaeI CTAG 2 cut(s) 378, 708
MaeIII GTNAC 2 cut(s) 310, 586
MalI GATC 5 cut(s) 162, 219, 366, 423, 462
MboI GATC 5 cut(s) 160, 217, 364, 421, 460
MboII GAAGA 7 cut(s) 425, 452, 464, 503, 506, 515, 673
MhlI GDGCHC 1 cut(s) 769
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 354, 673
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 56, 340, 502
MnlI CCTC 6 cut(s) 9, 25, 100, 213, 331, 517
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 130
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 357, 753
MslI CAYNNNNRTG 2 cut(s) 186, 279
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 66
Mva1269I GAATGC 1 cut(s) 722
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 1 cut(s) 738
NcoI CCATGG 1 cut(s) 280
NdeII GATC 5 cut(s) 160, 217, 364, 421, 460
NlaIII CATG 4 cut(s) 254, 284, 503, 797
PagI TCATGA 1 cut(s) 250
PceI AGGCCT 1 cut(s) 95
PciSI GCTCTTC 1 cut(s) 489
PctI GAATGC 1 cut(s) 722
PdmI GAANNNNTTC 1 cut(s) 130
PfeI GAWTC 2 cut(s) 131, 374
PkrI GCNGC 3 cut(s) 544, 693, 802
PleI GAGTC 3 cut(s) 55, 339, 502
PpsI GAGTC 3 cut(s) 55, 339, 502
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
RseI CAYNNNNRTG 2 cut(s) 186, 279
SapI GCTCTTC 1 cut(s) 489
SaqAI TTAA 2 cut(s) 357, 753
SatI GCNGC 3 cut(s) 543, 692, 801
Sau3AI GATC 5 cut(s) 160, 217, 364, 421, 460
SchI GAGTC 3 cut(s) 56, 340, 502
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 1 cut(s) 769
SexAI ACCWGGT 1 cut(s) 64
SmiMI CAYNNNNRTG 2 cut(s) 186, 279
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 2 cut(s) 354, 673
SseBI AGGCCT 1 cut(s) 95
SspMI CTAG 2 cut(s) 378, 708
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 64
StyI CCWWGG 1 cut(s) 280
TaqI TCGA 1 cut(s) 522
TasI AATT 2 cut(s) 354, 673
TfiI GAWTC 2 cut(s) 131, 374
Tru1I TTAA 2 cut(s) 357, 753
Tru9I TTAA 2 cut(s) 357, 753
TscAI CASTG 2 cut(s) 454, 774
TseI GCWGC 3 cut(s) 542, 691, 800
TspDTI ATGAA 3 cut(s) 366, 426, 516
TspGWI ACGGA 1 cut(s) 716
TspRI CASTG 2 cut(s) 454, 774
VneI GTGCAC 1 cut(s) 765
XagI CCTNNNNNAGG 1 cut(s) 742
XapI RAATTY 1 cut(s) 673
XmnI GAANNNNTTC 1 cut(s) 130
XspI CTAG 2 cut(s) 378, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.