Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006268

Physical Location & Seq

Genomic Coordinates Forward (+)

1052580 .. 1054274

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G03905.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTCAAGATCTCTGGTGAAACGCGTTGCTCCTTATTTGGCTGGTCGGATTAGAGAAAATCATCGATTGCTTAATTTTTCTTCTGCTTCTGCTATCAAAGAAGCATCTTCTTCTTCTTCGTCCCAACCTGAATCGTCTTCTAATGATGTAGTCCATCTCAGCGACAATTGTATCCGGAGAATGAAAGAGTTACAATCTAGTGAGCCGGAAAAGAAAATGCTTCGCTTGGGCGTAGAGACAGGAGGATGTTCTGGTTTCCAGTATAAGTTTGAGCTTGATAATAGAACCAACCCTGATGACAGGGTTTTCGAGAAGAATGGTGTCAAATTGGTTGTCGATAATGTTTCATACGACTTGGTGAAAGGTGCTACAATTGATTATGAGGAGGAATTGATCCGTGCTGCTTTCGTGGTAGCTGTAAACCCGTCCGCAGTGGGTGGGTGCAGTTGTAAAAGCTCCTTCATGGTGAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0043167 GO:0043169 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051539 GO:0051540 GO:0051604 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

158

Amino Acids

17.41

Weight (kDa)

8.35

Isoelectric Point (pI)

51.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03905 AT5G03905
fragaria_vesca	FvH4_6g18690 FvH4_6g18690
malus_domestica	MD06G1040300.v1.1 MD16G1269100.v1.1
prunus_persica	Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1
pyrus_communis	pycom06g03360 pycom16g23810
rosa_chinensis	RchiOBHm_Chr3g0473661
rosa_laevigata	RLG00000023996
rosa_multiflora	Rmu_co8353519.1_g000001 Rmu_sc0003069.1_g000005 Rmu_sc0004730.1_g000005 Rmu_sc0004984.1_g000003 Rmu_sc0005978.1_g000002
rosa_roxburghii	Rroxscaffold_6G00407970
rosa_rugosa	Rorug03G0133700
rosa_samantha	Rh3AG185300 Rh3BG213300 Rh3CG210000 Rh3DG209200 Rh5AG365500
rosa_wichuraiana	Rw0G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	24
AccIII	TCCGGA	1 cut(s)	174
AciI	CCGC	1 cut(s)	429
AclWI	GGATC	1 cut(s)	388
AflIII	ACRYGT	1 cut(s)	22
AluBI	AGCT	3 cut(s)	274, 416, 456
AluI	AGCT	3 cut(s)	274, 416, 456
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	388
Aor13HI	TCCGGA	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	401
ArsI	GACNNNNNNTTYG	4 cut(s)	290, 318, 322, 350
AsuHPI	GGTGA	2 cut(s)	28, 370
BaeI	ACNNNNGTAYC	2 cut(s)	154, 187
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	1 cut(s)	162
BciVI	GTATCC	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	198
BfuI	GTATCC	1 cut(s)	182
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
BmsI	GCATC	1 cut(s)	113
BpiI	GAAGAC	1 cut(s)	129
Bsa29I	ATCGAT	1 cut(s)	64
BsaWI	WCCGGW	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	259
BseAI	TCCGGA	1 cut(s)	174
BseCI	ATCGAT	1 cut(s)	64
BseGI	GGATG	1 cut(s)	251
BseMII	CTCAG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	388
BsgI	GTGCAG	1 cut(s)	463
Bsh1236I	CGCG	1 cut(s)	24
BshVI	ATCGAT	1 cut(s)	64
BsiSI	CCGG	2 cut(s)	175, 206
BslFI	GGGAC	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	106
Bsp13I	TCCGGA	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	8, 393
BspACI	CCGC	1 cut(s)	429
BspCNI	CTCAG	1 cut(s)	171
BspDI	ATCGAT	1 cut(s)	64
BspEI	TCCGGA	1 cut(s)	174
BspFNI	CGCG	1 cut(s)	24
BspPI	GGATC	1 cut(s)	388
BsrI	ACTGG	1 cut(s)	259
BssMI	GATC	2 cut(s)	8, 393
BstDEI	CTNAG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	251
BstFNI	CGCG	1 cut(s)	24
BstKTI	GATC	2 cut(s)	11, 396
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	2 cut(s)	8, 393
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	388
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
Bsu15I	ATCGAT	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	182
BsuTUI	ATCGAT	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	251
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	1 cut(s)	438
ClaI	ATCGAT	1 cut(s)	64
CviAII	CATG	1 cut(s)	463
CviJI	RGCY	5 cut(s)	41, 205, 274, 416, 456
CviKI_1	RGCY	5 cut(s)	41, 205, 274, 416, 456
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	2 cut(s)	10, 395
DpnII	GATC	2 cut(s)	8, 393
FaeI	CATG	1 cut(s)	466
FaiI	YATR	4 cut(s)	264, 349, 381, 464
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	1 cut(s)	462
Fnu4HI	GCNGC	1 cut(s)	402
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	1 cut(s)	402
HapII	CCGG	2 cut(s)	175, 206
Hin1II	CATG	1 cut(s)	466
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	2 cut(s)	175, 206
HphI	GGTGA	2 cut(s)	28, 370
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	2 cut(s)	48, 476
Hpy188III	TCNNGA	3 cut(s)	6, 175, 310
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	1 cut(s)	469
HpyCH4V	TGCA	1 cut(s)	444
HpyF3I	CTNAG	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	466
Kpn2I	TCCGGA	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	8, 393
LmnI	GCTCC	2 cut(s)	34, 461
LpnPI	CCDG	9 cut(s)	27, 141, 188, 219, 225, 237, 272, 286, 306
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	1 cut(s)	113
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	189
MalI	GATC	2 cut(s)	10, 395
MboI	GATC	2 cut(s)	8, 393
MboII	GAAGA	7 cut(s)	72, 99, 102, 105, 108, 129, 325
MfeI	CAATTG	2 cut(s)	166, 372
MflI	RGATCY	1 cut(s)	8
MluCI	AATT	5 cut(s)	73, 166, 326, 372, 389
MluI	ACGCGT	1 cut(s)	22
MmeI	TCCRAC	1 cut(s)	26
MnlI	CCTC	3 cut(s)	236, 376, 379
MroI	TCCGGA	1 cut(s)	174
MseI	TTAA	1 cut(s)	72
MspI	CCGG	2 cut(s)	175, 206
MunI	CAATTG	2 cut(s)	166, 372
MvnI	CGCG	1 cut(s)	24
NdeII	GATC	2 cut(s)	8, 393
NlaIII	CATG	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	2 cut(s)	8, 393
SetI	ASST	5 cut(s)	130, 276, 367, 418, 458
SfaNI	GCATC	1 cut(s)	113
Sse9I	AATT	5 cut(s)	73, 166, 326, 372, 389
SsiI	CCGC	1 cut(s)	429
SspMI	CTAG	1 cut(s)	198
TaqI	TCGA	3 cut(s)	64, 309, 336
TasI	AATT	5 cut(s)	73, 166, 326, 372, 389
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	1 cut(s)	438
TseI	GCWGC	1 cut(s)	401
TspDTI	ATGAA	3 cut(s)	197, 336, 451
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	1 cut(s)	438
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.