Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004984.1

Orthogroup ID

OG0006268

Physical Location & Seq

Genomic Coordinates Reverse (-)

8091 .. 10128

Gene Structure 2038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004984.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atggctccgaggacgttgattcttcaccggttgacggcgcactttgccggtcgaatcaggcagaaccagaggcttctcagctctcatttttattcctccacggcgttggaagaagccccttcctcttcttcttcttcttcttcctcctcgccgaacttggacggcgtttacatgacggacacttgtgttcagaaaatgaaacaactgcaagccagtgaagcacaggaaaagctgctccgcttgagtgtagaaacaggtggatgttctgggttccaatatgtttttgatttggtagatgacaaaaccaatccagatgacagggtgtttgagaaagaaggagtaaaattggtagtcgacaatatttcatatgattttttgaaaggggcaaccgttgattttgttgaggagctgatccgttctgctttccaagtgacagaaaatccaagtgcagtccagggttgcagttgtaaaagttctttcatggtgaaattatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0043167 GO:0043169 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051539 GO:0051540 GO:0051604 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

164

Amino Acids

18.13

Weight (kDa)

5.61

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03905 AT5G03905
fragaria_vesca	FvH4_6g18690 FvH4_6g18690
malus_domestica	MD06G1040300.v1.1 MD16G1269100.v1.1
prunus_persica	Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1
pyrus_communis	pycom06g03360 pycom16g23810
rosa_chinensis	RchiOBHm_Chr3g0473661
rosa_laevigata	RLG00000023996
rosa_multiflora	Rmu_co8353519.1_g000001 Rmu_sc0003069.1_g000005 Rmu_sc0004730.1_g000005 Rmu_sc0004984.1_g000003 Rmu_sc0005978.1_g000002
rosa_roxburghii	Rroxscaffold_6G00407970
rosa_rugosa	Rorug03G0133700
rosa_samantha	Rh3AG185300 Rh3BG213300 Rh3CG210000 Rh3DG209200 Rh5AG365500
rosa_wichuraiana	Rw0G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	354
AciI	CCGC	1 cut(s)	238
AclWI	GGATC	1 cut(s)	406
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgeI	ACCGGT	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	379
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	3 cut(s)	81, 232, 409
AluI	AGCT	3 cut(s)	81, 232, 409
AlwI	GGATC	1 cut(s)	406
ApeKI	GCWGC	1 cut(s)	232
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AsiGI	ACCGGT	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	219
BceAI	ACGGC	3 cut(s)	51, 117, 178
BciT130I	CCWGG	1 cut(s)	455
BisI	GCNGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	234
Bme1390I	CCNGG	1 cut(s)	455
BmiI	GGNNCC	2 cut(s)	6, 272
BmrFI	CCNGG	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	262
BsaJI	CCNNGG	3 cut(s)	8, 99, 454
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse118I	RCCGGY	2 cut(s)	27, 47
Bse1I	ACTGG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	3 cut(s)	8, 99, 454
BseGI	GGATG	1 cut(s)	266
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	213
BseRI	GAGGAG	2 cut(s)	136, 419
BseXI	GCAGC	1 cut(s)	219
BsgI	GTGCAG	1 cut(s)	468
Bsh1285I	CGRYCG	1 cut(s)	52
BshTI	ACCGGT	1 cut(s)	27
BsiEI	CGRYCG	1 cut(s)	52
BsiSI	CCGG	2 cut(s)	28, 48
BslI	CCNNNNNNNGG	1 cut(s)	34
Bsp143I	GATC	1 cut(s)	411
BspACI	CCGC	1 cut(s)	238
BspCNI	CTCAG	1 cut(s)	90
BspLI	GGNNCC	2 cut(s)	6, 272
BspPI	GGATC	1 cut(s)	406
BsrFI	RCCGGY	2 cut(s)	27, 47
BsrI	ACTGG	1 cut(s)	213
BssAI	RCCGGY	2 cut(s)	27, 47
BssECI	CCNNGG	3 cut(s)	8, 99, 454
BssMI	GATC	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	77
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	1 cut(s)	414
BstMBI	GATC	1 cut(s)	411
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 218
BstNI	CCWGG	1 cut(s)	455
BstSCI	CCNGG	1 cut(s)	453
BstV1I	GCAGC	1 cut(s)	219
BstXI	CCANNNNNNTGG	1 cut(s)	106
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	266
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	210
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	2 cut(s)	27, 47
CspAI	ACCGGT	1 cut(s)	27
CviAII	CATG	2 cut(s)	172, 481
CviJI	RGCY	7 cut(s)	5, 73, 81, 116, 212, 232, 409
CviKI_1	RGCY	7 cut(s)	5, 73, 81, 116, 212, 232, 409
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	453
FaeI	CATG	2 cut(s)	175, 484
FaiI	YATR	6 cut(s)	173, 279, 367, 369, 482, 493
FatI	CATG	2 cut(s)	171, 480
FauNDI	CATATG	1 cut(s)	367
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	1 cut(s)	233
FokI	GGATG	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	233
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	233
HapII	CCGG	2 cut(s)	28, 48
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	2 cut(s)	175, 484
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	2 cut(s)	33, 355
HindII	GTYRAC	2 cut(s)	33, 355
HinfI	GANTC	2 cut(s)	19, 54
HpaII	CCGG	2 cut(s)	28, 48
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	3 cut(s)	33, 169, 355
Hpy188I	TCNGA	2 cut(s)	9, 192
Hpy188III	TCNNGA	1 cut(s)	311
Hpy8I	GTNNAC	3 cut(s)	33, 169, 355
HpyAV	CCTTC	2 cut(s)	129, 329
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	3 cut(s)	208, 449, 462
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 218
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	175, 484
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	1 cut(s)	411
LmnI	GCTCC	3 cut(s)	10, 240, 406
Lsp1109I	GCAGC	1 cut(s)	219
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	1 cut(s)	413
MboI	GATC	1 cut(s)	411
MboII	GAAGA	8 cut(s)	14, 117, 120, 122, 123, 126, 129, 132
MluCI	AATT	2 cut(s)	344, 488
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	7 cut(s)	3, 63, 106, 133, 154, 157, 397
MspI	CCGG	2 cut(s)	28, 48
MspR9I	CCNGG	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	455
MwoI	GCNNNNNNNGC	2 cut(s)	44, 218
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	1 cut(s)	411
NlaIII	CATG	2 cut(s)	175, 484
NlaIV	GGNNCC	2 cut(s)	6, 272
NmuCI	GTSAC	1 cut(s)	430
PfeI	GAWTC	2 cut(s)	19, 54
PinAI	ACCGGT	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	453
PspN4I	GGNNCC	2 cut(s)	6, 272
SalI	GTCGAC	1 cut(s)	353
SatI	GCNGC	1 cut(s)	233
Sau3AI	GATC	1 cut(s)	411
ScrFI	CCNGG	1 cut(s)	455
SetI	ASST	5 cut(s)	17, 83, 234, 259, 411
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
Sse9I	AATT	2 cut(s)	344, 488
SsiI	CCGC	1 cut(s)	238
SspI	AATATT	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	2 cut(s)	52, 354
TasI	AATT	2 cut(s)	344, 488
TfiI	GAWTC	2 cut(s)	19, 54
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	3 cut(s)	212, 354, 469
TspGWI	ACGGA	2 cut(s)	191, 404
TspRI	CASTG	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.