Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8353519.1

Orthogroup ID

OG0006268

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1040

Gene Structure 1040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8353519.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

atgaaacaactgcaagccagtgaagcacaggaaaagctgctccgcttgagtgtagaaacaggtggatgttctgggttccaatatgtttttgatttggtagatgacaaaaccaatccagatgacagggtgtttgagaaagaaggagtaaaattggtagtcgacaatatttcatatgattttttgaaaggggcaaccgttgattttgttgaggagctgatccgttctgctttccaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0043167 GO:0043169 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051539 GO:0051540 GO:0051604 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

78

Amino Acids

8.82

Weight (kDa)

4.44

Isoelectric Point (pI)

25.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03905 AT5G03905
fragaria_vesca	FvH4_6g18690 FvH4_6g18690
malus_domestica	MD06G1040300.v1.1 MD16G1269100.v1.1
prunus_persica	Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1
pyrus_communis	pycom06g03360 pycom16g23810
rosa_chinensis	RchiOBHm_Chr3g0473661
rosa_laevigata	RLG00000023996
rosa_multiflora	Rmu_co8353519.1_g000001 Rmu_sc0003069.1_g000005 Rmu_sc0004730.1_g000005 Rmu_sc0004984.1_g000003 Rmu_sc0005978.1_g000002
rosa_roxburghii	Rroxscaffold_6G00407970
rosa_rugosa	Rorug03G0133700
rosa_samantha	Rh3AG185300 Rh3BG213300 Rh3CG210000 Rh3DG209200 Rh5AG365500
rosa_wichuraiana	Rw0G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	1 cut(s)	211
AgsI	TTSAA	1 cut(s)	184
AluBI	AGCT	2 cut(s)	37, 214
AluI	AGCT	2 cut(s)	37, 214
AlwI	GGATC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	37
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
BbvI	GCAGC	1 cut(s)	24
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	216
BspACI	CCGC	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	77
BspPI	GGATC	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	18
BssMI	GATC	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	71
BstKTI	GATC	1 cut(s)	219
BstMBI	GATC	1 cut(s)	216
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	71
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	15
CviJI	RGCY	3 cut(s)	17, 37, 214
CviKI_1	RGCY	3 cut(s)	17, 37, 214
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
FaiI	YATR	3 cut(s)	84, 172, 174
FauNDI	CATATG	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	38
FokI	GGATG	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
Kzo9I	GATC	1 cut(s)	216
LmnI	GCTCC	2 cut(s)	45, 211
LpnPI	CCDG	6 cut(s)	14, 31, 45, 57, 109, 129
Lsp1109I	GCAGC	1 cut(s)	24
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MluCI	AATT	1 cut(s)	149
MnlI	CCTC	1 cut(s)	202
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	1 cut(s)	216
NlaIV	GGNNCC	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	77
SalI	GTCGAC	1 cut(s)	158
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	1 cut(s)	216
SetI	ASST	3 cut(s)	39, 64, 216
SgeI	CNNG	8 cut(s)	26, 30, 41, 58, 72, 84, 128, 136
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
Sse9I	AATT	1 cut(s)	149
SsiI	CCGC	1 cut(s)	43
SspI	AATATT	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	1 cut(s)	159
TasI	AATT	1 cut(s)	149
TscAI	CASTG	1 cut(s)	25
TseI	GCWGC	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	17, 159
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.