Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006268

Physical Location & Seq

Genomic Coordinates Reverse (-)

12330600 .. 12333767

Gene Structure 3168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18690.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCTCCGGGGACGTTGATTCTTCGTCGGCTCACGACGCACTTTGCCAATCGAATCAGGCAGAACCAGAGGCTTCTCAGCTCTCATTTGTATTCCTCTTCGGCGTTGGAAGAAGCTCCTTCCTCTTCTTCTTCTTCCTCGGCGAACTTGGATGGCGTTCACATGACCGACACTTGTATTCAGAAAATGAAACAACTGAAAGCGAGTGAAGCACAGGAAAAGATGCTCCGCTTGAGTGTAGAAACAGGTGGATGTTCTGGGTTCCAGTATGTTTTTGATCTTGTGGATGACAAAACCAATCCAGATGACAGAGTGTTCGAGAAAGAAGGTGTAAAATTGGTGGTCGACAATATTTCGTATGATTTTTTGAAAGGGGCAACCGTTGATTATGTTGAGGAGCTGATCCGTTCTGCTTTTCAAGTGACAGAAAATCCAAGTGCAGTCCAGGGTTGCAGTTGCAAAAGTTCTTTCATGGTGAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0043167 GO:0043169 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051539 GO:0051540 GO:0051604 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

162

Amino Acids

17.82

Weight (kDa)

5.92

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe-S_biosyn	PF01521	53 - 154	1.9e-16	Iron-sulphur cluster biosynthesis

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03905 AT5G03905
fragaria_vesca	FvH4_6g18690 FvH4_6g18690
malus_domestica	MD06G1040300.v1.1 MD16G1269100.v1.1
prunus_persica	Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1
pyrus_communis	pycom06g03360 pycom16g23810
rosa_chinensis	RchiOBHm_Chr3g0473661
rosa_laevigata	RLG00000023996
rosa_multiflora	Rmu_co8353519.1_g000001 Rmu_sc0003069.1_g000005 Rmu_sc0004730.1_g000005 Rmu_sc0004984.1_g000003 Rmu_sc0005978.1_g000002
rosa_roxburghii	Rroxscaffold_6G00407970
rosa_rugosa	Rorug03G0133700
rosa_samantha	Rh3AG185300 Rh3BG213300 Rh3CG210000 Rh3DG209200 Rh5AG365500
rosa_wichuraiana	Rw0G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	345
AciI	CCGC	1 cut(s)	229
AclWI	GGATC	1 cut(s)	397
AgsI	TTSAA	2 cut(s)	370, 419
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	3 cut(s)	81, 116, 400
AluI	AGCT	3 cut(s)	81, 116, 400
AlwI	GGATC	1 cut(s)	397
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
AsuC2I	CCSGG	1 cut(s)	9
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	446
BcnI	CCSGG	1 cut(s)	9
Bme1390I	CCNGG	2 cut(s)	9, 446
BmiI	GGNNCC	2 cut(s)	6, 263
BmrFI	CCNGG	2 cut(s)	9, 446
BmsI	GCATC	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	253
BpuMI	CCSGG	1 cut(s)	9
BsaJI	CCNNGG	3 cut(s)	8, 138, 445
Bse1I	ACTGG	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	3 cut(s)	8, 138, 445
BseGI	GGATG	3 cut(s)	157, 257, 292
BseMII	CTCAG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	1 cut(s)	410
BsgI	GTGCAG	1 cut(s)	459
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	25
Bsp143I	GATC	2 cut(s)	277, 402
BspACI	CCGC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	90
BspLI	GGNNCC	2 cut(s)	6, 263
BspPI	GGATC	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	3 cut(s)	8, 138, 445
BssMI	GATC	2 cut(s)	277, 402
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	2 cut(s)	103, 130
BstDEI	CTNAG	1 cut(s)	77
BstF5I	GGATG	3 cut(s)	157, 257, 292
BstKTI	GATC	2 cut(s)	280, 405
BstMBI	GATC	2 cut(s)	277, 402
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 209
BstNI	CCWGG	1 cut(s)	446
BstSCI	CCNGG	2 cut(s)	7, 444
BtsCI	GGATG	3 cut(s)	157, 257, 292
CseI	GACGC	1 cut(s)	46
CviAII	CATG	2 cut(s)	163, 472
CviJI	RGCY	6 cut(s)	5, 31, 73, 81, 116, 400
CviKI_1	RGCY	6 cut(s)	5, 31, 73, 81, 116, 400
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	2 cut(s)	279, 404
DpnII	GATC	2 cut(s)	277, 402
Eam1104I	CTCTTC	2 cut(s)	103, 130
EarI	CTCTTC	2 cut(s)	103, 130
EcoRII	CCWGG	1 cut(s)	444
FaeI	CATG	2 cut(s)	166, 475
FaiI	YATR	6 cut(s)	164, 270, 360, 390, 473, 484
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	2 cut(s)	162, 471
FblI	GTMKAC	1 cut(s)	345
FokI	GGATG	3 cut(s)	164, 264, 299
HapII	CCGG	1 cut(s)	8
HgaI	GACGC	1 cut(s)	46
Hin1II	CATG	2 cut(s)	166, 475
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	2 cut(s)	19, 54
HpaII	CCGG	1 cut(s)	8
Hpy166II	GTNNAC	2 cut(s)	160, 346
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	3 cut(s)	34, 302, 319
Hpy8I	GTNNAC	2 cut(s)	160, 346
Hpy99I	CGWCG	2 cut(s)	30, 40
HpyAV	CCTTC	2 cut(s)	129, 320
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	3 cut(s)	440, 453, 459
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 209
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	166, 475
Kzo9I	GATC	2 cut(s)	277, 402
LmnI	GCTCC	4 cut(s)	10, 121, 231, 397
LweI	GCATC	1 cut(s)	213
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	2 cut(s)	279, 404
MboI	GATC	2 cut(s)	277, 402
MboII	GAAGA	7 cut(s)	14, 90, 117, 120, 122, 123, 126
MluCI	AATT	2 cut(s)	335, 479
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	5 cut(s)	63, 106, 133, 148, 388
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	2 cut(s)	9, 446
MvaI	CCWGG	1 cut(s)	446
MwoI	GCNNNNNNNGC	2 cut(s)	37, 209
NciI	CCSGG	1 cut(s)	9
NdeII	GATC	2 cut(s)	277, 402
NlaIII	CATG	2 cut(s)	166, 475
NlaIV	GGNNCC	2 cut(s)	6, 263
NmeAIII	GCCGAG	1 cut(s)	119
NmuCI	GTSAC	1 cut(s)	421
PfeI	GAWTC	2 cut(s)	19, 54
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	2 cut(s)	6, 263
SalI	GTCGAC	1 cut(s)	344
Sau3AI	GATC	2 cut(s)	277, 402
ScrFI	CCNGG	2 cut(s)	9, 446
SetI	ASST	6 cut(s)	17, 83, 118, 250, 331, 402
SfaNI	GCATC	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	2 cut(s)	335, 479
SsiI	CCGC	1 cut(s)	229
SspI	AATATT	1 cut(s)	352
StyD4I	CCNGG	2 cut(s)	7, 444
TaaI	ACNGT	1 cut(s)	382
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	3 cut(s)	52, 318, 345
TaqII	GACCGA	1 cut(s)	182
TasI	AATT	2 cut(s)	335, 479
TfiI	GAWTC	2 cut(s)	19, 54
TseFI	GTSAC	1 cut(s)	421
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	2 cut(s)	203, 460
TspGWI	ACGGA	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.