Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006268

Physical Location & Seq

Genomic Coordinates Forward (+)

30519465 .. 30522151

Gene Structure 2687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00407970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCTCCGAGGACGTTGATTCTTCACCGGTTGACGGCGCACTTTGCCGGTCGAATCAGGCAGAACCAGAGGCTTCTCAGCTCTCATTTTTATTCCTCTACGGCGTTGGAAGAAGCCCCTTCTTCCTCTTCTTCTTCCTCCTCGCCCAACTTGGATGGCGTTCACATGACGGACACTTGTGTTCAGAAAATGAAACAACTGCAAGCCAGTGAAGCACAGGAAAAGCTGCTCCGCTTGAGTGTAGAAACAGGTGGATGTTCTGGGTTCCAATATGTTTTTGATCTGGTGGATGACAAAACCAATCCAGATGACAGGGTGTTCGAGAAAGAAGGAGTAAAATTGGTAGTCGACAATATTTCATATGATTTTTTGAAAGGGGCAACCGTTGATTATGTTGAGGAGCTGATCCGTTCTGCTTTCCAATTACTGGTGACAGAAAATCCAAGTGCAGTCCAGGGTTGCAGTTGTAAAAGTTCTTTCATGGTGAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0043167 GO:0043169 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051539 GO:0051540 GO:0051604 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

164

Amino Acids

18.17

Weight (kDa)

5.79

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe-S_biosyn	PF01521	54 - 157	1.3e-15	Iron-sulphur cluster biosynthesis

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03905 AT5G03905
fragaria_vesca	FvH4_6g18690 FvH4_6g18690
malus_domestica	MD06G1040300.v1.1 MD16G1269100.v1.1
prunus_persica	Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1
pyrus_communis	pycom06g03360 pycom16g23810
rosa_chinensis	RchiOBHm_Chr3g0473661
rosa_laevigata	RLG00000023996
rosa_multiflora	Rmu_co8353519.1_g000001 Rmu_sc0003069.1_g000005 Rmu_sc0004730.1_g000005 Rmu_sc0004984.1_g000003 Rmu_sc0005978.1_g000002
rosa_roxburghii	Rroxscaffold_6G00407970
rosa_rugosa	Rorug03G0133700
rosa_samantha	Rh3AG185300 Rh3BG213300 Rh3CG210000 Rh3DG209200 Rh5AG365500
rosa_wichuraiana	Rw0G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	427
AccI	GTMKAC	1 cut(s)	348
AciI	CCGC	1 cut(s)	232
AclWI	GGATC	1 cut(s)	400
AfiI	CCNNNNNNNGG	2 cut(s)	34, 427
AgeI	ACCGGT	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	373
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	3 cut(s)	81, 226, 403
AluI	AGCT	3 cut(s)	81, 226, 403
AlwI	GGATC	1 cut(s)	400
ApeKI	GCWGC	1 cut(s)	226
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AsiGI	ACCGGT	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	40
AsuHPI	GGTGA	2 cut(s)	17, 442
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	2 cut(s)	51, 117
BciT130I	CCWGG	1 cut(s)	455
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme1390I	CCNGG	1 cut(s)	455
BmiI	GGNNCC	2 cut(s)	6, 266
BmrFI	CCNGG	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	256
BsaJI	CCNNGG	2 cut(s)	8, 454
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 427
Bse118I	RCCGGY	2 cut(s)	27, 47
Bse1I	ACTGG	2 cut(s)	207, 432
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	2 cut(s)	8, 454
BseGI	GGATG	3 cut(s)	160, 260, 295
BseLI	CCNNNNNNNGG	2 cut(s)	34, 427
BseMII	CTCAG	1 cut(s)	91
BseNI	ACTGG	2 cut(s)	207, 432
BseRI	GAGGAG	2 cut(s)	130, 413
BseXI	GCAGC	1 cut(s)	213
BsgI	GTGCAG	1 cut(s)	468
Bsh1285I	CGRYCG	1 cut(s)	52
BshTI	ACCGGT	1 cut(s)	27
BsiEI	CGRYCG	1 cut(s)	52
BsiSI	CCGG	2 cut(s)	28, 48
BslI	CCNNNNNNNGG	2 cut(s)	34, 427
Bsp143I	GATC	2 cut(s)	280, 405
BspACI	CCGC	1 cut(s)	232
BspCNI	CTCAG	1 cut(s)	90
BspLI	GGNNCC	2 cut(s)	6, 266
BspPI	GGATC	1 cut(s)	400
BsrFI	RCCGGY	2 cut(s)	27, 47
BsrI	ACTGG	2 cut(s)	207, 432
BssAI	RCCGGY	2 cut(s)	27, 47
BssECI	CCNNGG	2 cut(s)	8, 454
BssMI	GATC	2 cut(s)	280, 405
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	385
Bst6I	CTCTTC	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	77
BstF5I	GGATG	3 cut(s)	160, 260, 295
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	2 cut(s)	283, 408
BstMBI	GATC	2 cut(s)	280, 405
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 212
BstNI	CCWGG	1 cut(s)	455
BstSCI	CCNGG	1 cut(s)	453
BstV1I	GCAGC	1 cut(s)	213
BtsCI	GGATG	3 cut(s)	160, 260, 295
BtsIMutI	CAGTG	1 cut(s)	214
Cac8I	GCNNGC	1 cut(s)	204
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	2 cut(s)	27, 47
CspAI	ACCGGT	1 cut(s)	27
CviAII	CATG	2 cut(s)	166, 481
CviJI	RGCY	7 cut(s)	5, 73, 81, 116, 206, 226, 403
CviKI_1	RGCY	7 cut(s)	5, 73, 81, 116, 206, 226, 403
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	2 cut(s)	282, 407
DpnII	GATC	2 cut(s)	280, 405
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	453
FaeI	CATG	2 cut(s)	169, 484
FaiI	YATR	7 cut(s)	167, 273, 361, 363, 393, 482, 493
FatI	CATG	2 cut(s)	165, 480
FauNDI	CATATG	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	3 cut(s)	167, 267, 302
Fsp4HI	GCNGC	1 cut(s)	227
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	227
HapII	CCGG	2 cut(s)	28, 48
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	2 cut(s)	169, 484
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	2 cut(s)	33, 349
HindII	GTYRAC	2 cut(s)	33, 349
HinfI	GANTC	2 cut(s)	19, 54
HpaII	CCGG	2 cut(s)	28, 48
HphI	GGTGA	2 cut(s)	17, 442
Hpy166II	GTNNAC	3 cut(s)	33, 163, 349
Hpy188I	TCNGA	2 cut(s)	9, 186
Hpy188III	TCNNGA	2 cut(s)	305, 322
Hpy8I	GTNNAC	3 cut(s)	33, 163, 349
HpyAV	CCTTC	2 cut(s)	129, 323
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	3 cut(s)	202, 449, 462
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 212
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	169, 484
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	2 cut(s)	280, 405
LmnI	GCTCC	3 cut(s)	10, 234, 400
Lsp1109I	GCAGC	1 cut(s)	213
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	2 cut(s)	282, 407
MboI	GATC	2 cut(s)	280, 405
MboII	GAAGA	6 cut(s)	14, 114, 120, 122, 123, 126
MluCI	AATT	3 cut(s)	338, 422, 488
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	7 cut(s)	3, 63, 106, 136, 148, 151, 391
MspI	CCGG	2 cut(s)	28, 48
MspR9I	CCNGG	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	455
MwoI	GCNNNNNNNGC	2 cut(s)	44, 212
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	2 cut(s)	280, 405
NlaIII	CATG	2 cut(s)	169, 484
NlaIV	GGNNCC	2 cut(s)	6, 266
NmuCI	GTSAC	1 cut(s)	430
PfeI	GAWTC	2 cut(s)	19, 54
PflMI	CCANNNNNTGG	1 cut(s)	427
PinAI	ACCGGT	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	453
PspN4I	GGNNCC	2 cut(s)	6, 266
SalI	GTCGAC	1 cut(s)	347
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	2 cut(s)	280, 405
ScrFI	CCNGG	1 cut(s)	455
SetI	ASST	5 cut(s)	17, 83, 228, 253, 405
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	3 cut(s)	338, 422, 488
SsiI	CCGC	1 cut(s)	232
SspI	AATATT	1 cut(s)	355
StyD4I	CCNGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	3 cut(s)	52, 321, 348
TasI	AATT	3 cut(s)	338, 422, 488
TfiI	GAWTC	2 cut(s)	19, 54
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	3 cut(s)	206, 348, 469
TspGWI	ACGGA	2 cut(s)	185, 398
TspRI	CASTG	1 cut(s)	214
Van91I	CCANNNNNTGG	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.