Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006268

Physical Location & Seq

Genomic Coordinates Forward (+)

4254962 .. 4256095

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCTCCACCACGATCTCTGATCCTTCACCGGCTGACGCCCTACTTTGCAGCTCGAATCAGGCAGAACCAGAGGCTCCTATCCTCTTCTTTCTTCTATTCCTCTTCCTCTTCCGCTGCAGAAGAAGCCTCCTCTTCTTCTCCATCTCCGTCCCTCGACCTCGATTCCGTTCACATGACTGATACCTGTGTTCAAAGAATGAAGCAGCTGCAAGCCAGTGAAGCGGAGGGAAAGGTGCTACGTTTGAGTGTAGAAACCGGTGGATGTTCTGGGTTCCAATATGTTTTTGATCTGGATGACAAAAGCCATCCGGATGACAGAGTATTTGAGAAAGGAGGAGTAAAGTTGGTGGTCGACAATATTTCGTATGATTTTGTGAAAGGAGCAACTGTTGATTATGTTGAGGAGCTGATTCGTTCTGCTTTCCAAGTAAGTCAATTTATCTCATTCCATTTCATGCTTTGTTCTTTAATTTTCCTGTCCGTGGTGCATGTCAAATCTTACACACATGACCCCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0043167 GO:0043169 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051539 GO:0051540 GO:0051604 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

174

Amino Acids

19.31

Weight (kDa)

5.82

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03905 AT5G03905
fragaria_vesca	FvH4_6g18690 FvH4_6g18690
malus_domestica	MD06G1040300.v1.1 MD16G1269100.v1.1
prunus_persica	Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1
pyrus_communis	pycom06g03360 pycom16g23810
rosa_chinensis	RchiOBHm_Chr3g0473661
rosa_laevigata	RLG00000023996
rosa_multiflora	Rmu_co8353519.1_g000001 Rmu_sc0003069.1_g000005 Rmu_sc0004730.1_g000005 Rmu_sc0004984.1_g000003 Rmu_sc0005978.1_g000002
rosa_roxburghii	Rroxscaffold_6G00407970
rosa_rugosa	Rorug03G0133700
rosa_samantha	Rh3AG185300 Rh3BG213300 Rh3CG210000 Rh3DG209200 Rh5AG365500
rosa_wichuraiana	Rw0G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	354
AccIII	TCCGGA	1 cut(s)	310
AciI	CCGC	2 cut(s)	114, 224
AclWI	GGATC	1 cut(s)	16
AcyI	GRCGYC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	484
AgeI	ACCGGT	1 cut(s)	257
AgsI	TTSAA	1 cut(s)	194
AluBI	AGCT	3 cut(s)	53, 208, 409
AluI	AGCT	3 cut(s)	53, 208, 409
AlwI	GGATC	1 cut(s)	16
Aor13HI	TCCGGA	1 cut(s)	310
ApeKI	GCWGC	4 cut(s)	50, 116, 205, 208
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AsiGI	ACCGGT	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	20
BaeI	ACNNNNGTAYC	2 cut(s)	174, 207
BbvI	GCAGC	4 cut(s)	62, 103, 195, 217
BccI	CCATC	2 cut(s)	151, 315
BfmI	CTRYAG	1 cut(s)	117
BisI	GCNGC	4 cut(s)	51, 117, 206, 209
BlsI	GCNGC	4 cut(s)	52, 118, 207, 210
BmiI	GGNNCC	3 cut(s)	6, 77, 275
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	483
BsaWI	WCCGGW	2 cut(s)	257, 310
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	484
Bse118I	RCCGGY	2 cut(s)	30, 257
Bse1I	ACTGG	1 cut(s)	216
BseAI	TCCGGA	1 cut(s)	310
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	4 cut(s)	269, 301, 307, 319
BseLI	CCNNNNNNNGG	1 cut(s)	484
BseNI	ACTGG	1 cut(s)	216
BseRI	GAGGAG	3 cut(s)	121, 351, 419
BseXI	GCAGC	4 cut(s)	62, 103, 195, 217
BshTI	ACCGGT	1 cut(s)	257
BsiSI	CCGG	3 cut(s)	31, 258, 311
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	484
BsmFI	GGGAC	1 cut(s)	136
Bsp13I	TCCGGA	1 cut(s)	310
Bsp143I	GATC	3 cut(s)	14, 21, 289
BspACI	CCGC	2 cut(s)	114, 224
BspEI	TCCGGA	1 cut(s)	310
BspLI	GGNNCC	3 cut(s)	6, 77, 275
BspMAI	CTGCAG	1 cut(s)	121
BspPI	GGATC	1 cut(s)	16
BsrFI	RCCGGY	2 cut(s)	30, 257
BsrI	ACTGG	1 cut(s)	216
BssAI	RCCGGY	2 cut(s)	30, 257
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	3 cut(s)	14, 21, 289
BssNI	GRCGYC	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	4 cut(s)	91, 109, 115, 139
BstACI	GRCGYC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	213
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	4 cut(s)	269, 301, 307, 319
BstKTI	GATC	3 cut(s)	17, 24, 292
BstMBI	GATC	3 cut(s)	14, 21, 289
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 221
BstNSI	RCATGY	1 cut(s)	494
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	4 cut(s)	62, 103, 195, 217
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	4 cut(s)	269, 301, 307, 319
BtsIMutI	CAGTG	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	213
Cfr10I	RCCGGY	2 cut(s)	30, 257
CseI	GACGC	1 cut(s)	46
CspAI	ACCGGT	1 cut(s)	257
CviAII	CATG	5 cut(s)	175, 457, 491, 509, 519
CviJI	RGCY	9 cut(s)	5, 34, 53, 76, 128, 208, 215, 306, 409
CviKI_1	RGCY	9 cut(s)	5, 34, 53, 76, 128, 208, 215, 306, 409
DpnI	GATC	3 cut(s)	16, 23, 291
DpnII	GATC	3 cut(s)	14, 21, 289
Eam1104I	CTCTTC	4 cut(s)	91, 109, 115, 139
EarI	CTCTTC	4 cut(s)	91, 109, 115, 139
FaeI	CATG	5 cut(s)	178, 460, 494, 512, 522
FaiI	YATR	8 cut(s)	176, 282, 369, 399, 458, 492, 510, 520
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	5 cut(s)	174, 456, 490, 508, 518
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	4 cut(s)	51, 117, 206, 209
FokI	GGATG	4 cut(s)	276, 294, 308, 326
Fsp4HI	GCNGC	4 cut(s)	51, 117, 206, 209
GluI	GCNGC	4 cut(s)	51, 117, 206, 209
HapII	CCGG	3 cut(s)	31, 258, 311
HgaI	GACGC	1 cut(s)	46
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	5 cut(s)	178, 460, 494, 512, 522
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	3 cut(s)	57, 164, 412
HpaII	CCGG	3 cut(s)	31, 258, 311
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	2 cut(s)	172, 355
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	2 cut(s)	293, 311
Hpy8I	GTNNAC	2 cut(s)	172, 355
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	4 cut(s)	50, 119, 211, 490
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 221
HpySE526I	ACGT	1 cut(s)	241
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	5 cut(s)	178, 460, 494, 512, 522
Kpn2I	TCCGGA	1 cut(s)	310
Kzo9I	GATC	3 cut(s)	14, 21, 289
LmnI	GCTCC	4 cut(s)	10, 81, 383, 406
Lsp1109I	GCAGC	4 cut(s)	62, 103, 195, 217
MaeII	ACGT	1 cut(s)	241
MalI	GATC	3 cut(s)	16, 23, 291
MboI	GATC	3 cut(s)	14, 21, 289
MboII	GAAGA	7 cut(s)	78, 85, 96, 102, 126, 129, 134
MluCI	AATT	2 cut(s)	437, 471
MroI	TCCGGA	1 cut(s)	310
MseI	TTAA	1 cut(s)	470
MslI	CAYNNNNRTG	1 cut(s)	312
MspA1I	CMGCKG	2 cut(s)	116, 208
MspI	CCGG	3 cut(s)	31, 258, 311
MwoI	GCNNNNNNNGC	2 cut(s)	125, 221
NdeII	GATC	3 cut(s)	14, 21, 289
NlaIII	CATG	5 cut(s)	178, 460, 494, 512, 522
NlaIV	GGNNCC	3 cut(s)	6, 77, 275
NspI	RCATGY	1 cut(s)	494
PfeI	GAWTC	3 cut(s)	57, 164, 412
PinAI	ACCGGT	1 cut(s)	257
PkrI	GCNGC	4 cut(s)	52, 118, 207, 210
PspN4I	GGNNCC	3 cut(s)	6, 77, 275
PstI	CTGCAG	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	312
SalI	GTCGAC	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	470
SatI	GCNGC	4 cut(s)	51, 117, 206, 209
Sau3AI	GATC	3 cut(s)	14, 21, 289
SetI	ASST	7 cut(s)	55, 162, 188, 210, 237, 244, 411
SfcI	CTRYAG	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	312
Sse9I	AATT	2 cut(s)	437, 471
SsiI	CCGC	2 cut(s)	114, 224
SspI	AATATT	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	4 cut(s)	55, 156, 162, 354
TasI	AATT	2 cut(s)	437, 471
TfiI	GAWTC	3 cut(s)	57, 164, 412
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TscAI	CASTG	1 cut(s)	223
TseI	GCWGC	4 cut(s)	50, 116, 205, 208
TspDTI	ATGAA	2 cut(s)	215, 445
TspGWI	ACGGA	3 cut(s)	138, 157, 472
TspRI	CASTG	1 cut(s)	223
XceI	RCATGY	1 cut(s)	494
XmiI	GTMKAC	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.