Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00346

Orthogroup ID

OG0006268

Physical Location & Seq

Genomic Coordinates Forward (+)

12450 .. 15426

Gene Structure 2977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G008900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCTCCGAGGACGTTGATTCTTCACCGGTTGACGGCGCACTTTGGCGGTCGAATCAGGCAGAACCAGAGGCTTCTCAGCTCTCATTTTTATTCCTCCACGGCGTTGGAAGAAGCCCCTTCCTCTTCCTCTTCTTCTTCCTCCTCGCCGAACTTGGACGGCGTTTACATGACGGACACTTGTGTTCAGAAAATGAAACAACTGCAAGCCACTGAAGCACAGGAAAAGCTGCTCCGCTTGAGTGTAGAAACAGGTGGATGTTCTGGGTTCCAATATGTTTTTGATCTGGTGGATGACAAAACCAATCCAGATGACAGGGTGTTTGAGAAAGGAGGAGTAAAATTGGTAGTCGACAATATTTCATATGATTTTTTGAAAGGGGCAACCGTTGATTATGTTGAGGAGCTGATCCGTTCTGCTTTCCAAGTGACAGAAAATCCAAGTGCAGTCCAGGGTTGCAGTTGTAAAAGTTCTTTCATGGTGAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0043167 GO:0043169 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051539 GO:0051540 GO:0051604 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

163

Amino Acids

17.99

Weight (kDa)

5.9

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe-S_biosyn	PF01521	56 - 156	6e-16	Iron-sulphur cluster biosynthesis

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03905 AT5G03905
fragaria_vesca	FvH4_6g18690 FvH4_6g18690
malus_domestica	MD06G1040300.v1.1 MD16G1269100.v1.1
prunus_persica	Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1
pyrus_communis	pycom06g03360 pycom16g23810
rosa_chinensis	RchiOBHm_Chr3g0473661
rosa_laevigata	RLG00000023996
rosa_multiflora	Rmu_co8353519.1_g000001 Rmu_sc0003069.1_g000005 Rmu_sc0004730.1_g000005 Rmu_sc0004984.1_g000003 Rmu_sc0005978.1_g000002
rosa_roxburghii	Rroxscaffold_6G00407970
rosa_rugosa	Rorug03G0133700
rosa_samantha	Rh3AG185300 Rh3BG213300 Rh3CG210000 Rh3DG209200 Rh5AG365500
rosa_wichuraiana	Rw0G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	351
AciI	CCGC	2 cut(s)	48, 235
AclWI	GGATC	1 cut(s)	403
AcuI	CTGAAG	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgeI	ACCGGT	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	376
AjnI	CCWGG	1 cut(s)	450
AluBI	AGCT	3 cut(s)	81, 229, 406
AluI	AGCT	3 cut(s)	81, 229, 406
AlwI	GGATC	1 cut(s)	403
ApeKI	GCWGC	1 cut(s)	229
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
AsiGI	ACCGGT	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	216
BceAI	ACGGC	3 cut(s)	51, 117, 175
BciT130I	CCWGG	1 cut(s)	452
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	452
BmiI	GGNNCC	2 cut(s)	6, 269
BmrFI	CCNGG	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	259
BsaJI	CCNNGG	3 cut(s)	8, 99, 451
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse118I	RCCGGY	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	452
BseDI	CCNNGG	3 cut(s)	8, 99, 451
BseGI	GGATG	2 cut(s)	263, 298
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	91
BseRI	GAGGAG	3 cut(s)	133, 348, 416
BseXI	GCAGC	1 cut(s)	216
BsgI	GTGCAG	1 cut(s)	465
Bsh1285I	CGRYCG	1 cut(s)	52
BshTI	ACCGGT	1 cut(s)	27
BsiEI	CGRYCG	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	283, 408
BspACI	CCGC	2 cut(s)	48, 235
BspCNI	CTCAG	1 cut(s)	90
BspLI	GGNNCC	2 cut(s)	6, 269
BspPI	GGATC	1 cut(s)	403
BsrFI	RCCGGY	1 cut(s)	27
BssAI	RCCGGY	1 cut(s)	27
BssECI	CCNNGG	3 cut(s)	8, 99, 451
BssMI	GATC	2 cut(s)	283, 408
Bst2UI	CCWGG	1 cut(s)	452
Bst4CI	ACNGT	1 cut(s)	388
Bst6I	CTCTTC	2 cut(s)	130, 136
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	77
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	263, 298
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	2 cut(s)	286, 411
BstMBI	GATC	2 cut(s)	283, 408
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	450
BstV1I	GCAGC	1 cut(s)	216
BstXI	CCANNNNNNTGG	1 cut(s)	106
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	263, 298
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	207
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	1 cut(s)	27
CspAI	ACCGGT	1 cut(s)	27
CviAII	CATG	2 cut(s)	169, 478
CviJI	RGCY	7 cut(s)	5, 73, 81, 116, 209, 229, 406
CviKI_1	RGCY	7 cut(s)	5, 73, 81, 116, 209, 229, 406
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	2 cut(s)	285, 410
DpnII	GATC	2 cut(s)	283, 408
Eam1104I	CTCTTC	2 cut(s)	130, 136
EarI	CTCTTC	2 cut(s)	130, 136
Eco57I	CTGAAG	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	450
FaeI	CATG	2 cut(s)	172, 481
FaiI	YATR	7 cut(s)	170, 276, 364, 366, 396, 479, 490
FatI	CATG	2 cut(s)	168, 477
FauNDI	CATATG	1 cut(s)	364
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	230
FokI	GGATG	2 cut(s)	270, 305
Fsp4HI	GCNGC	1 cut(s)	230
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	230
HapII	CCGG	1 cut(s)	28
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	2 cut(s)	172, 481
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	2 cut(s)	33, 352
HindII	GTYRAC	2 cut(s)	33, 352
HinfI	GANTC	2 cut(s)	19, 54
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	3 cut(s)	33, 166, 352
Hpy188I	TCNGA	2 cut(s)	9, 189
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	3 cut(s)	33, 166, 352
HpyAV	CCTTC	1 cut(s)	129
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	3 cut(s)	205, 446, 459
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	172, 481
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	2 cut(s)	283, 408
LmnI	GCTCC	3 cut(s)	10, 237, 403
Lsp1109I	GCAGC	1 cut(s)	216
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	2 cut(s)	285, 410
MboI	GATC	2 cut(s)	283, 408
MboII	GAAGA	6 cut(s)	14, 117, 122, 123, 126, 129
MluCI	AATT	2 cut(s)	341, 485
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	9 cut(s)	3, 63, 106, 133, 139, 151, 154, 326, 394
MspI	CCGG	1 cut(s)	28
MspR9I	CCNGG	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	452
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeI	CATATG	1 cut(s)	364
NdeII	GATC	2 cut(s)	283, 408
NlaIII	CATG	2 cut(s)	172, 481
NlaIV	GGNNCC	2 cut(s)	6, 269
NmuCI	GTSAC	1 cut(s)	427
PfeI	GAWTC	2 cut(s)	19, 54
PinAI	ACCGGT	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	450
PspGI	CCWGG	1 cut(s)	450
PspN4I	GGNNCC	2 cut(s)	6, 269
SalI	GTCGAC	1 cut(s)	350
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	2 cut(s)	283, 408
ScrFI	CCNGG	1 cut(s)	452
SetI	ASST	5 cut(s)	17, 83, 231, 256, 408
SmlI	CTYRAG	1 cut(s)	238
SmoI	CTYRAG	1 cut(s)	238
Sse9I	AATT	2 cut(s)	341, 485
SsiI	CCGC	2 cut(s)	48, 235
SspI	AATATT	1 cut(s)	358
StyD4I	CCNGG	1 cut(s)	450
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	2 cut(s)	52, 351
TasI	AATT	2 cut(s)	341, 485
TfiI	GAWTC	2 cut(s)	19, 54
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	3 cut(s)	209, 351, 466
TspGWI	ACGGA	2 cut(s)	188, 401
TspRI	CASTG	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.