Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006268

Physical Location & Seq

Genomic Coordinates Forward (+)

4999446 .. 5002398

Gene Structure 2953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G046500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCTCCAAGATCTCTGATTCTTCACCGACTCACGCCCTTCTTTGCAGCTCGAATCAGGCAGAACCAGAGGCTTCTAAGCTCTTCTTTCTATTCGTCTTCTGCTGTAGAAGAAGCCTCTTCTTCATCTTCATCTTCATCTCCGTCCCTCGATGCTGTTGTGATGACTGATACATGTGTTCAAAGAATGAAGCAGCTGCAAGCCAGTGAAGCAGAGGGAAAGATGCTTCGCTTGAGTGTAGAAACTGGTGGATGTTCTGGGTTCCAATATGTTTTTGATCTGGATGACAAAACCCACCCAGATGACAGAGTATTTGAGAAAGAAGGAGTAAAGTTGGTGGTCGACAATGTTTCATATGATTTTGTGAAAGGGGCAACTGTTGATTATGTTGAGGAGCTGATCCGTTCTGCTTTCCAAGTGACTACAAATCCAAGTGCAGTAGGTGGGTGCAGTTGTAAAAGTTCCTTCATGGTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0043167 GO:0043169 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051539 GO:0051540 GO:0051604 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

160

Amino Acids

17.41

Weight (kDa)

5.69

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03905 AT5G03905
fragaria_vesca	FvH4_6g18690 FvH4_6g18690
malus_domestica	MD06G1040300.v1.1 MD16G1269100.v1.1
prunus_persica	Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1
pyrus_communis	pycom06g03360 pycom16g23810
rosa_chinensis	RchiOBHm_Chr3g0473661
rosa_laevigata	RLG00000023996
rosa_multiflora	Rmu_co8353519.1_g000001 Rmu_sc0003069.1_g000005 Rmu_sc0004730.1_g000005 Rmu_sc0004984.1_g000003 Rmu_sc0005978.1_g000002
rosa_roxburghii	Rroxscaffold_6G00407970
rosa_rugosa	Rorug03G0133700
rosa_samantha	Rh3AG185300 Rh3BG213300 Rh3CG210000 Rh3DG209200 Rh5AG365500
rosa_wichuraiana	Rw0G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	342
AclWI	GGATC	1 cut(s)	394
AflIII	ACRYGT	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	182
AluBI	AGCT	4 cut(s)	50, 81, 196, 397
AluI	AGCT	4 cut(s)	50, 81, 196, 397
AlwI	GGATC	1 cut(s)	394
ApeKI	GCWGC	3 cut(s)	47, 193, 196
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AsuHPI	GGTGA	1 cut(s)	17
BaeI	ACNNNNGTAYC	2 cut(s)	162, 195
BbsI	GAAGAC	1 cut(s)	90
BbvI	GCAGC	3 cut(s)	59, 183, 205
BfmI	CTRYAG	1 cut(s)	105
BglII	AGATCT	1 cut(s)	11
BisI	GCNGC	3 cut(s)	48, 194, 197
BlsI	GCNGC	3 cut(s)	49, 195, 198
BmiI	GGNNCC	2 cut(s)	6, 263
BmsI	GCATC	2 cut(s)	142, 213
BpiI	GAAGAC	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	253
Bse1I	ACTGG	2 cut(s)	204, 250
BseGI	GGATG	2 cut(s)	257, 289
BseNI	ACTGG	2 cut(s)	204, 250
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	3 cut(s)	59, 183, 205
BsgI	GTGCAG	2 cut(s)	456, 469
BslFI	GGGAC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	130
Bsp143I	GATC	3 cut(s)	11, 277, 399
BspLI	GGNNCC	2 cut(s)	6, 263
BspPI	GGATC	1 cut(s)	394
BspQI	GCTCTTC	1 cut(s)	88
BsrI	ACTGG	2 cut(s)	204, 250
BssMI	GATC	3 cut(s)	11, 277, 399
Bst4CI	ACNGT	1 cut(s)	379
Bst6I	CTCTTC	2 cut(s)	88, 124
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	77
BstF5I	GGATG	2 cut(s)	257, 289
BstKTI	GATC	3 cut(s)	14, 280, 402
BstMBI	GATC	3 cut(s)	11, 277, 399
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	177
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	3 cut(s)	59, 183, 205
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
BtsCI	GGATG	2 cut(s)	257, 289
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	201
CviAII	CATG	2 cut(s)	174, 469
CviJI	RGCY	8 cut(s)	5, 50, 73, 81, 116, 196, 203, 397
CviKI_1	RGCY	8 cut(s)	5, 50, 73, 81, 116, 196, 203, 397
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	3 cut(s)	13, 279, 401
DpnII	GATC	3 cut(s)	11, 277, 399
Eam1104I	CTCTTC	2 cut(s)	88, 124
EarI	CTCTTC	2 cut(s)	88, 124
FaeI	CATG	2 cut(s)	177, 472
FaiI	YATR	6 cut(s)	175, 270, 355, 357, 387, 470
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	2 cut(s)	173, 468
FauNDI	CATATG	1 cut(s)	355
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	3 cut(s)	48, 194, 197
FokI	GGATG	2 cut(s)	264, 296
Fsp4HI	GCNGC	3 cut(s)	48, 194, 197
GluI	GCNGC	3 cut(s)	48, 194, 197
Hin1II	CATG	2 cut(s)	177, 472
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	3 cut(s)	19, 30, 54
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	1 cut(s)	343
HpyAV	CCTTC	3 cut(s)	49, 317, 475
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4V	TGCA	4 cut(s)	47, 199, 437, 450
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	1 cut(s)	77
Hsp92II	CATG	2 cut(s)	177, 472
Kzo9I	GATC	3 cut(s)	11, 277, 399
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	2 cut(s)	10, 394
LpnPI	CCDG	7 cut(s)	43, 80, 217, 231, 243, 266, 312
Lsp1109I	GCAGC	3 cut(s)	59, 183, 205
LweI	GCATC	2 cut(s)	142, 213
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	3 cut(s)	13, 279, 401
MboI	GATC	3 cut(s)	11, 277, 399
MboII	GAAGA	8 cut(s)	14, 75, 90, 111, 114, 120, 122, 126
MflI	RGATCY	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	24
MnlI	CCTC	5 cut(s)	63, 127, 158, 208, 385
MslI	CAYNNNNRTG	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	196
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	3 cut(s)	11, 277, 399
NlaIII	CATG	2 cut(s)	177, 472
NlaIV	GGNNCC	2 cut(s)	6, 263
NmuCI	GTSAC	1 cut(s)	418
NspI	RCATGY	1 cut(s)	177
PciI	ACATGT	1 cut(s)	173
PciSI	GCTCTTC	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	19, 54
PkrI	GCNGC	3 cut(s)	49, 195, 198
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PscI	ACATGT	1 cut(s)	173
PspN4I	GGNNCC	2 cut(s)	6, 263
PsuI	RGATCY	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	196
RseI	CAYNNNNRTG	1 cut(s)	300
SalI	GTCGAC	1 cut(s)	341
SapI	GCTCTTC	1 cut(s)	88
SatI	GCNGC	3 cut(s)	48, 194, 197
Sau3AI	GATC	3 cut(s)	11, 277, 399
SchI	GAGTC	1 cut(s)	24
SetI	ASST	5 cut(s)	52, 83, 198, 399, 445
SfaNI	GCATC	2 cut(s)	142, 213
SfcI	CTRYAG	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	379
TaqI	TCGA	3 cut(s)	52, 150, 342
TfiI	GAWTC	2 cut(s)	19, 54
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	3 cut(s)	47, 193, 196
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	6 cut(s)	114, 120, 126, 203, 342, 457
TspGWI	ACGGA	2 cut(s)	132, 392
TspRI	CASTG	1 cut(s)	211
XceI	RCATGY	1 cut(s)	177
XmiI	GTMKAC	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.