Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006268

Physical Location & Seq

Genomic Coordinates Forward (+)

10910530 .. 10911899

Gene Structure 1370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0133700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCAGGTTTCAACAGCCAAAGATGGTCTCTGAAGGGTATGACCGCCCTCGTCACTGGTGGAACTAAAGGCATTGGATATGCCATCGTGGAAGAGCTAGCCGGACTAGGGGCTACAGTGCATACCTGCGCTCGTAATCAAGAACAGATTGACGAGAGGGTTCGAGAATGGAAGAGCAAGGGTTTTAAAGTGAGTGGCTCAGTGAGTGATCTCACATCTAAATCTCAAAGAGAGGAGCTCATGAGAACTGTTTCCTCTCATTTTGACGGCGAACTTAACATCCTTGTAAATAATGCAGCAACAGTCACTCTAAGAAATACTACAGAATATGATCTGGAAGATTTGTCAAGTATGATGAGCACAAATGTTGAATCCCCCTACCATCTTTGTCAACTTGCATATCCTCTCCTCAAGGCCTCCGGAAATGGAAGTATTGTATTCGTCGCCTCCATTGCTGGTTTAAAAGCTCTACCTAGACTATCTGCCTATGCAGCAACGAAAAGTGCCGTCATCCAGATTTCAAAGAACTTGGCGTGTGAATGGGCTAAAGACGGCATTCGAACAAACGCTGTAGCACCTTGGGCTGTTAACACCGGAGTTAAAGTTGAAAACGATGACCACTCTGACTACTTCAGACGGCTAATAAGTCGAACTCCTATCCGTCGCGTTGCGGAACCTAATGAAATCTCATCACTGGTCACTTTTCTCTGCCTTCCTGCTGCTTCTTACATCAATGGACAAGTTGTTAGTGTTGATGGAGGATTTACCGTAAGCGGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0043167 GO:0043169 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051539 GO:0051540 GO:0051604 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

260

Amino Acids

28.13

Weight (kDa)

7.67

Isoelectric Point (pI)

31.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	13 - 200	7.5e-06	SDR-like rossmann domain
adh_short	PF00106	15 - 205	2.9e-50	short chain dehydrogenase
KR	PF08659	15 - 170	1.1e-11	KR domain
adh_short_C2	PF13561	23 - 256	6.5e-55	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03905 AT5G03905
fragaria_vesca	FvH4_6g18690 FvH4_6g18690
malus_domestica	MD06G1040300.v1.1 MD16G1269100.v1.1
prunus_persica	Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1
pyrus_communis	pycom06g03360 pycom16g23810
rosa_chinensis	RchiOBHm_Chr3g0473661
rosa_laevigata	RLG00000023996
rosa_multiflora	Rmu_co8353519.1_g000001 Rmu_sc0003069.1_g000005 Rmu_sc0004730.1_g000005 Rmu_sc0004984.1_g000003 Rmu_sc0005978.1_g000002
rosa_roxburghii	Rroxscaffold_6G00407970
rosa_rugosa	Rorug03G0133700
rosa_samantha	Rh3AG185300 Rh3BG213300 Rh3CG210000 Rh3DG209200 Rh5AG365500
rosa_wichuraiana	Rw0G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	134
AccII	CGCG	1 cut(s)	666
AccIII	TCCGGA	1 cut(s)	419
AciI	CCGC	3 cut(s)	45, 671, 774
AcuI	CTGAAG	2 cut(s)	53, 616
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	4 cut(s)	13, 371, 522, 608
AloI	GAACNNNNNNTCC	2 cut(s)	264, 296
AluBI	AGCT	3 cut(s)	97, 238, 467
AluI	AGCT	3 cut(s)	97, 238, 467
Alw21I	GWGCWC	2 cut(s)	240, 362
Alw26I	GTCTC	1 cut(s)	33
Aor13HI	TCCGGA	1 cut(s)	419
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	3 cut(s)	296, 491, 719
Asp700I	GAANNNNTTC	1 cut(s)	250
AspLEI	GCGC	1 cut(s)	131
AsuII	TTCGAA	1 cut(s)	559
AsuNHI	GCTAGC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	240
Bbv12I	GWGCWC	2 cut(s)	240, 362
BbvI	GCAGC	3 cut(s)	308, 503, 706
BccI	CCATC	4 cut(s)	18, 92, 390, 749
BceAI	ACGGC	4 cut(s)	283, 491, 568, 653
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	3 cut(s)	98, 107, 474
BfmI	CTRYAG	3 cut(s)	114, 321, 570
BfuAI	ACCTGC	1 cut(s)	134
BisI	GCNGC	3 cut(s)	297, 492, 720
BlsI	GCNGC	3 cut(s)	298, 493, 721
BmiI	GGNNCC	1 cut(s)	675
BmtI	GCTAGC	1 cut(s)	101
BplI	GAGNNNNNCTC	2 cut(s)	222, 254
Bpu14I	TTCGAA	1 cut(s)	559
BpuEI	CTTGAG	1 cut(s)	395
BsaI	GGTCTC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	578
BsaWI	WCCGGW	2 cut(s)	419, 593
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse1I	ACTGG	2 cut(s)	61, 699
Bse3DI	GCAATG	1 cut(s)	450
BseAI	TCCGGA	1 cut(s)	419
BseDI	CCNNGG	1 cut(s)	578
BseGI	GGATG	2 cut(s)	279, 510
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	2 cut(s)	61, 699
BseRI	GAGGAG	2 cut(s)	248, 398
BseXI	GCAGC	3 cut(s)	308, 503, 706
Bsh1236I	CGCG	1 cut(s)	666
BshFI	GGCC	1 cut(s)	416
BsiHKAI	GWGCWC	2 cut(s)	240, 362
BsiSI	CCGG	3 cut(s)	102, 420, 594
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	555
BsnI	GGCC	1 cut(s)	416
Bso31I	GGTCTC	1 cut(s)	33
Bsp119I	TTCGAA	1 cut(s)	559
Bsp1286I	GDGCHC	2 cut(s)	240, 362
Bsp13I	TCCGGA	1 cut(s)	419
Bsp143I	GATC	2 cut(s)	208, 331
BspACI	CCGC	3 cut(s)	45, 671, 774
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	1 cut(s)	212
BspEI	TCCGGA	1 cut(s)	419
BspFNI	CGCG	1 cut(s)	666
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	675
BspMI	ACCTGC	1 cut(s)	134
BspOI	GCTAGC	1 cut(s)	101
BspQI	GCTCTTC	2 cut(s)	87, 167
BspT104I	TTCGAA	1 cut(s)	559
BspTNI	GGTCTC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	450
BsrI	ACTGG	2 cut(s)	61, 699
BssECI	CCNNGG	1 cut(s)	578
BssMI	GATC	2 cut(s)	208, 331
BssT1I	CCWWGG	1 cut(s)	578
Bst4CI	ACNGT	4 cut(s)	118, 250, 304, 769
Bst6I	CTCTTC	2 cut(s)	87, 167
BstBI	TTCGAA	1 cut(s)	559
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	2 cut(s)	199, 311
BstF5I	GGATG	2 cut(s)	279, 510
BstFNI	CGCG	1 cut(s)	666
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	2 cut(s)	211, 334
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	2 cut(s)	208, 331
BstMWI	GCNNNNNNNGC	3 cut(s)	452, 491, 581
BstSFI	CTRYAG	3 cut(s)	114, 321, 570
BstUI	CGCG	1 cut(s)	666
BstV1I	GCAGC	3 cut(s)	308, 503, 706
BsuRI	GGCC	1 cut(s)	416
BtsCI	GGATG	2 cut(s)	279, 510
BtsIMutI	CAGTG	4 cut(s)	54, 123, 207, 692
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	1 cut(s)	99
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	1 cut(s)	131
CviAII	CATG	1 cut(s)	241
DdeI	CTNAG	2 cut(s)	199, 311
DpnI	GATC	2 cut(s)	210, 333
DpnII	GATC	2 cut(s)	208, 331
DraI	TTTAAA	2 cut(s)	187, 462
Eam1104I	CTCTTC	2 cut(s)	87, 167
EarI	CTCTTC	2 cut(s)	87, 167
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	578
Eco147I	AGGCCT	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	33
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	2 cut(s)	53, 616
EcoICRI	GAGCTC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	578
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	578
FaeI	CATG	1 cut(s)	244
FaiI	YATR	8 cut(s)	41, 81, 123, 242, 330, 353, 400, 489
FatI	CATG	1 cut(s)	240
Fnu4HI	GCNGC	3 cut(s)	297, 492, 720
FokI	GGATG	2 cut(s)	266, 497
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	3 cut(s)	297, 492, 720
FspBI	CTAG	3 cut(s)	98, 107, 474
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	3 cut(s)	297, 492, 720
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	3 cut(s)	102, 420, 594
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	1 cut(s)	244
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	2 cut(s)	392, 589
HindII	GTYRAC	2 cut(s)	392, 589
HinfI	GANTC	1 cut(s)	371
HpaI	GTTAAC	1 cut(s)	589
HpaII	CCGG	3 cut(s)	102, 420, 594
Hpy166II	GTNNAC	2 cut(s)	392, 589
Hpy188I	TCNGA	3 cut(s)	33, 625, 635
Hpy188III	TCNNGA	6 cut(s)	140, 164, 241, 335, 420, 514
Hpy8I	GTNNAC	2 cut(s)	392, 589
Hpy99I	CGWCG	2 cut(s)	446, 666
HpyAV	CCTTC	2 cut(s)	28, 722
HpyCH4III	ACNGT	4 cut(s)	118, 250, 304, 769
HpyCH4V	TGCA	4 cut(s)	121, 296, 398, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	452, 491, 581
HpyF3I	CTNAG	2 cut(s)	199, 311
Hsp92II	CATG	1 cut(s)	244
HspAI	GCGC	1 cut(s)	129
Kpn2I	TCCGGA	1 cut(s)	419
KspAI	GTTAAC	1 cut(s)	589
Kzo9I	GATC	2 cut(s)	208, 331
LguI	GCTCTTC	2 cut(s)	87, 167
LmnI	GCTCC	1 cut(s)	235
Lsp1109I	GCAGC	3 cut(s)	308, 503, 706
MaeI	CTAG	3 cut(s)	98, 107, 474
MaeIII	GTNAC	3 cut(s)	52, 304, 697
MalI	GATC	2 cut(s)	210, 333
MboI	GATC	2 cut(s)	208, 331
MboII	GAAGA	3 cut(s)	104, 184, 350
MhlI	GDGCHC	2 cut(s)	240, 362
MnlI	CCTC	9 cut(s)	59, 150, 226, 265, 414, 419, 427, 457, 752
MroI	TCCGGA	1 cut(s)	419
MroXI	GAANNNNTTC	1 cut(s)	250
MseI	TTAA	5 cut(s)	186, 276, 461, 588, 600
MspI	CCGG	3 cut(s)	102, 420, 594
Mva1269I	GAATGC	1 cut(s)	555
MvnI	CGCG	1 cut(s)	666
MwoI	GCNNNNNNNGC	3 cut(s)	452, 491, 581
NdeII	GATC	2 cut(s)	208, 331
NheI	GCTAGC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	244
NlaIV	GGNNCC	1 cut(s)	675
NmuCI	GTSAC	3 cut(s)	52, 304, 697
NspV	TTCGAA	1 cut(s)	559
PagI	TCATGA	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	416
PciSI	GCTCTTC	2 cut(s)	87, 167
PctI	GAATGC	1 cut(s)	555
PdmI	GAANNNNTTC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	3 cut(s)	298, 493, 721
Psp124BI	GAGCTC	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	675
SacI	GAGCTC	1 cut(s)	240
SapI	GCTCTTC	2 cut(s)	87, 167
SaqAI	TTAA	5 cut(s)	186, 276, 461, 588, 600
SatI	GCNGC	3 cut(s)	297, 492, 720
Sau3AI	GATC	2 cut(s)	208, 331
SduI	GDGCHC	2 cut(s)	240, 362
SetI	ASST	8 cut(s)	10, 99, 128, 240, 469, 475, 580, 679
SfcI	CTRYAG	3 cut(s)	114, 321, 570
SfuI	TTCGAA	1 cut(s)	559
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SseBI	AGGCCT	1 cut(s)	416
SsiI	CCGC	3 cut(s)	45, 671, 774
SspMI	CTAG	3 cut(s)	98, 107, 474
SstI	GAGCTC	1 cut(s)	240
StuI	AGGCCT	1 cut(s)	416
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	4 cut(s)	118, 250, 304, 769
TaqI	TCGA	3 cut(s)	163, 559, 649
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	5 cut(s)	186, 276, 461, 588, 600
Tru9I	TTAA	5 cut(s)	186, 276, 461, 588, 600
TscAI	CASTG	4 cut(s)	61, 123, 207, 699
TseFI	GTSAC	3 cut(s)	52, 304, 697
TseI	GCWGC	3 cut(s)	296, 491, 719
Tsp45I	GTSAC	3 cut(s)	52, 304, 697
TspDTI	ATGAA	1 cut(s)	696
TspGWI	ACGGA	1 cut(s)	650
TspRI	CASTG	4 cut(s)	61, 123, 207, 699
XmnI	GAANNNNTTC	1 cut(s)	250
XspI	CTAG	3 cut(s)	98, 107, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.