Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006268

Physical Location & Seq

Genomic Coordinates Reverse (-)

19291333 .. 19296044

Gene Structure 4712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG213300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCTCCGAGGACGTTGATTCTTCACCGGTTGACGGCGCACTTTGCCGGTCGAATCAGGCAGAACCAGAGGCTTCTCAGCTCTCATTTTTATTCCTCCACGGCGTTGGAAGAAGCCCCTTCCTCTTCTTCTTCTTCCTCCTCGCCGAACTTGGACGGCGTTTACATGACGGACACTTGTGTTCAGAAAATGAAACAACTGCAAGCCAGTGAAGCACAGGAAAAGCTGCTCCGCTTGAGTGTAGAAACAGGTGGATGTTCTGGGTTCCAATATGTTTTTGATCTGGTGGATGACAAAACCAATCCAGATGACAGGTTTTTGTTTTGCCCTTCCCGTTCTCTGTACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0043167 GO:0043169 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051539 GO:0051540 GO:0051604 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

116

Amino Acids

13.01

Weight (kDa)

6.81

Isoelectric Point (pI)

61.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03905 AT5G03905
fragaria_vesca	FvH4_6g18690 FvH4_6g18690
malus_domestica	MD06G1040300.v1.1 MD16G1269100.v1.1
prunus_persica	Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1 Prupe.5G046500_v2.0.a1
pyrus_communis	pycom06g03360 pycom16g23810
rosa_chinensis	RchiOBHm_Chr3g0473661
rosa_laevigata	RLG00000023996
rosa_multiflora	Rmu_co8353519.1_g000001 Rmu_sc0003069.1_g000005 Rmu_sc0004730.1_g000005 Rmu_sc0004984.1_g000003 Rmu_sc0005978.1_g000002
rosa_roxburghii	Rroxscaffold_6G00407970
rosa_rugosa	Rorug03G0133700
rosa_samantha	Rh3AG185300 Rh3BG213300 Rh3CG210000 Rh3DG209200 Rh5AG365500
rosa_wichuraiana	Rw0G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	232
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	34
AflIII	ACRYGT	1 cut(s)	345
AgeI	ACCGGT	1 cut(s)	27
AluBI	AGCT	2 cut(s)	81, 226
AluI	AGCT	2 cut(s)	81, 226
ApeKI	GCWGC	1 cut(s)	226
AsiGI	ACCGGT	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	213
BceAI	ACGGC	3 cut(s)	51, 117, 172
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
BmiI	GGNNCC	2 cut(s)	6, 266
BpuEI	CTTGAG	1 cut(s)	256
BsaJI	CCNNGG	2 cut(s)	8, 99
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse118I	RCCGGY	2 cut(s)	27, 47
Bse1I	ACTGG	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	8, 99
BseGI	GGATG	2 cut(s)	260, 295
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	213
Bsh1285I	CGRYCG	1 cut(s)	52
BshTI	ACCGGT	1 cut(s)	27
BsiEI	CGRYCG	1 cut(s)	52
BsiSI	CCGG	2 cut(s)	28, 48
BslI	CCNNNNNNNGG	1 cut(s)	34
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	1 cut(s)	232
BspCNI	CTCAG	1 cut(s)	90
BspLI	GGNNCC	2 cut(s)	6, 266
BsrFI	RCCGGY	2 cut(s)	27, 47
BsrGI	TGTACA	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	207
BssAI	RCCGGY	2 cut(s)	27, 47
BssECI	CCNNGG	2 cut(s)	8, 99
BssMI	GATC	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	130
BstAUI	TGTACA	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	77
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	260, 295
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	280
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 212
BstNSI	RCATGY	1 cut(s)	349
BstV1I	GCAGC	1 cut(s)	213
BstXI	CCANNNNNNTGG	1 cut(s)	106
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	260, 295
BtsIMutI	CAGTG	1 cut(s)	214
Cac8I	GCNNGC	1 cut(s)	204
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	2 cut(s)	27, 47
Csp6I	GTAC	1 cut(s)	343
CspAI	ACCGGT	1 cut(s)	27
CviAII	CATG	2 cut(s)	166, 346
CviJI	RGCY	6 cut(s)	5, 73, 81, 116, 206, 226
CviKI_1	RGCY	6 cut(s)	5, 73, 81, 116, 206, 226
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
FaeI	CATG	2 cut(s)	169, 349
FaiI	YATR	3 cut(s)	167, 273, 347
FatI	CATG	2 cut(s)	165, 345
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	2 cut(s)	267, 302
Fsp4HI	GCNGC	1 cut(s)	227
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	227
HapII	CCGG	2 cut(s)	28, 48
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	2 cut(s)	169, 349
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	2 cut(s)	19, 54
HpaII	CCGG	2 cut(s)	28, 48
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	2 cut(s)	33, 163
Hpy188I	TCNGA	2 cut(s)	9, 186
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	2 cut(s)	33, 163
HpyAV	CCTTC	2 cut(s)	129, 339
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 212
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	169, 349
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	1 cut(s)	280
LmnI	GCTCC	2 cut(s)	10, 234
Lsp1109I	GCAGC	1 cut(s)	213
MaeII	ACGT	1 cut(s)	14
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	6 cut(s)	14, 117, 120, 122, 123, 126
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	6 cut(s)	3, 63, 106, 133, 148, 151
MspI	CCGG	2 cut(s)	28, 48
MwoI	GCNNNNNNNGC	2 cut(s)	44, 212
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	2 cut(s)	169, 349
NlaIV	GGNNCC	2 cut(s)	6, 266
NspI	RCATGY	1 cut(s)	349
PciI	ACATGT	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	19, 54
PinAI	ACCGGT	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	228
PscI	ACATGT	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	6, 266
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	1 cut(s)	280
SetI	ASST	5 cut(s)	17, 83, 228, 253, 317
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
SsiI	CCGC	1 cut(s)	232
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	1 cut(s)	52
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	2 cut(s)	19, 54
TscAI	CASTG	1 cut(s)	214
TseI	GCWGC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	206
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	1 cut(s)	214
XceI	RCATGY	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.