AT5G03920

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010949
Physical Location & Seq
Forward (+)
1058146 .. 1058769
624 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G03920.1

Sequence Viewer

Length: 525 bp
ATGGAGAAGTCCCCGGTGGTCATGGCCGAAGAAGGAGAACACTCGGGAGCTAAGGAACTTCCCAAACCCAAAATCTCCATGTCGGATCTCACCTTTGTCATAGGCGTGTACACAACCAAATCAAAGAAGTTAACAGTTGTAGAATTTGGCGCGGACCGCGAGTTTAACCCTAATGACCGGTTCAAAATAGAAATCGTAGACTTGAGTCGTTTTGAACTGCCCAAGTCTGGTATGGATGATGTAATGATCACTTGGGAAGTCGTTTATAAGAAAGATTGGCAAAACATTGTCACAATCGTTAAAGGTCGAAGGTCATTAGACACAAACTTACGATGGTTGTTCAACGATCTTCTTGCTCCAGAAGATCTAATCAGACGTGGCCTAACCGGCGATGTCAAGGTGAGTTTAAACGGCGACTTACTTGACAAGATCAGCCTTGAGATATTCATTGAAAGCGACCAGAGATATTTTTCCCCTGAAGATACTCTTAGATATCTTCAATGTTTTTTCCCCTCTAAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

174

Amino Acids

20.08

Weight (kDa)

5.2

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 267
AccI GTMKAC 1 cut(s) 198
AccII CGCG 2 cut(s) 152, 159
AciI CCGC 2 cut(s) 152, 157
AclWI GGATC 1 cut(s) 93
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 498
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 227
AgeI ACCGGT 1 cut(s) 177
AgsI TTSAA 5 cut(s) 184, 215, 343, 452, 500
AjiI CACGTC 1 cut(s) 377
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
AlwI GGATC 1 cut(s) 93
Ama87I CYCGRG 1 cut(s) 43
AoxI GGCC 2 cut(s) 24, 379
ApoI RAATTY 1 cut(s) 143
AsiGI ACCGGT 1 cut(s) 177
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 154
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 2 cut(s) 82, 412
AvaI CYCGRG 1 cut(s) 43
AvaII GGWCC 1 cut(s) 154
BccI CCATC 1 cut(s) 327
BceAI ACGGC 1 cut(s) 427
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BclI TGATCA 1 cut(s) 246
BcnI CCSGG 1 cut(s) 14
BglI GCCNNNNNGGC 1 cut(s) 387
BglII AGATCT 1 cut(s) 364
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 154
BmeT110I CYCGRG 1 cut(s) 43
BmgBI CACGTC 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 14
BoxI GACNNNNGTC 1 cut(s) 204
BpmI CTGGAG 1 cut(s) 342
Bpu10I CCTNAGC 1 cut(s) 51
BpuEI CTTGAG 2 cut(s) 223, 458
BpuMI CCSGG 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 12
BsaWI WCCGGW 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse118I RCCGGY 2 cut(s) 177, 386
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 1 cut(s) 227
Bsh1236I CGCG 2 cut(s) 152, 159
BshFI GGCC 2 cut(s) 26, 381
BshTI ACCGGT 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 43
BsiSI CCGG 3 cut(s) 14, 178, 387
BslI CCNNNNNNNGG 1 cut(s) 227
BsnI GGCC 2 cut(s) 26, 381
BsoBI CYCGRG 1 cut(s) 43
Bsp1407I TGTACA 1 cut(s) 108
Bsp143I GATC 5 cut(s) 85, 246, 346, 364, 429
BspACI CCGC 2 cut(s) 152, 157
BspANI GGCC 2 cut(s) 26, 381
BspFNI CGCG 2 cut(s) 152, 159
BspPI GGATC 1 cut(s) 93
BsrFI RCCGGY 2 cut(s) 177, 386
BsrGI TGTACA 1 cut(s) 108
BssAI RCCGGY 2 cut(s) 177, 386
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 5 cut(s) 85, 246, 346, 364, 429
Bst4CI ACNGT 1 cut(s) 136
BstAUI TGTACA 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 51, 488
BstF5I GGATG 1 cut(s) 241
BstFNI CGCG 2 cut(s) 152, 159
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 5 cut(s) 88, 249, 349, 367, 432
BstMBI GATC 5 cut(s) 85, 246, 346, 364, 429
BstMWI GCNNNNNNNGC 2 cut(s) 156, 387
BstPAI GACNNNNGTC 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 12
BstUI CGCG 2 cut(s) 152, 159
BstX2I RGATCY 2 cut(s) 85, 364
BstYI RGATCY 2 cut(s) 85, 364
BsuRI GGCC 2 cut(s) 26, 381
BtgZI GCGATG 1 cut(s) 405
BtrI CACGTC 1 cut(s) 377
BtsCI GGATG 1 cut(s) 241
CfoI GCGC 1 cut(s) 152
Cfr10I RCCGGY 2 cut(s) 177, 386
Cfr13I GGNCC 1 cut(s) 154
CpoI CGGWCCG 1 cut(s) 154
Csp6I GTAC 1 cut(s) 109
CspAI ACCGGT 1 cut(s) 177
CspI CGGWCCG 1 cut(s) 154
CviAII CATG 2 cut(s) 22, 79
CviJI RGCY 4 cut(s) 26, 50, 381, 435
CviKI_1 RGCY 4 cut(s) 26, 50, 381, 435
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 2 cut(s) 51, 488
DpnI GATC 5 cut(s) 87, 248, 348, 366, 431
DpnII GATC 5 cut(s) 85, 246, 346, 364, 429
DraI TTTAAA 1 cut(s) 408
EaeI YGGCCR 1 cut(s) 24
Eco32I GATATC 1 cut(s) 494
Eco47I GGWCC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 498
Eco88I CYCGRG 1 cut(s) 43
EcoRV GATATC 1 cut(s) 494
FaeI CATG 2 cut(s) 25, 82
FaiI YATR 5 cut(s) 23, 80, 101, 233, 267
FalI AAGNNNNNCTT 2 cut(s) 471, 503
FatI CATG 2 cut(s) 21, 78
FbaI TGATCA 1 cut(s) 246
FblI GTMKAC 1 cut(s) 198
FokI GGATG 1 cut(s) 248
GlaI GCGC 1 cut(s) 151
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 2 cut(s) 26, 381
HapII CCGG 3 cut(s) 14, 178, 387
HhaI GCGC 1 cut(s) 152
Hin1II CATG 2 cut(s) 25, 82
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HinfI GANTC 1 cut(s) 205
HpaI GTTAAC 1 cut(s) 132
HpaII CCGG 3 cut(s) 14, 178, 387
HphI GGTGA 2 cut(s) 82, 412
Hpy166II GTNNAC 4 cut(s) 109, 111, 132, 199
Hpy188I TCNGA 2 cut(s) 85, 374
Hpy188III TCNNGA 2 cut(s) 45, 359
Hpy8I GTNNAC 4 cut(s) 109, 111, 132, 199
HpyAV CCTTC 2 cut(s) 26, 303
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 376
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 387
HpyF3I CTNAG 2 cut(s) 51, 488
HpySE526I ACGT 1 cut(s) 376
Hsp92II CATG 2 cut(s) 25, 82
HspAI GCGC 1 cut(s) 150
Ksp22I TGATCA 1 cut(s) 246
KspAI GTTAAC 1 cut(s) 132
Kzo9I GATC 5 cut(s) 85, 246, 346, 364, 429
LmnI GCTCC 2 cut(s) 47, 361
LpnPI CCDG 7 cut(s) 27, 191, 213, 372, 400, 473, 489
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 1 cut(s) 289
MalI GATC 5 cut(s) 87, 248, 348, 366, 431
MboI GATC 5 cut(s) 85, 246, 346, 364, 429
MboII GAAGA 5 cut(s) 41, 341, 374, 488, 491
MflI RGATCY 2 cut(s) 85, 364
MluCI AATT 1 cut(s) 143
MlyI GAGTC 1 cut(s) 214
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 1 cut(s) 523
MseI TTAA 4 cut(s) 131, 165, 300, 407
MslI CAYNNNNRTG 1 cut(s) 104
MspI CCGG 3 cut(s) 14, 178, 387
MspR9I CCNGG 1 cut(s) 14
MssI GTTTAAAC 1 cut(s) 408
MvnI CGCG 2 cut(s) 152, 159
MwoI GCNNNNNNNGC 2 cut(s) 156, 387
NciI CCSGG 1 cut(s) 14
NdeII GATC 5 cut(s) 85, 246, 346, 364, 429
NlaIII CATG 2 cut(s) 25, 82
NmuCI GTSAC 1 cut(s) 289
PinAI ACCGGT 1 cut(s) 177
PleI GAGTC 1 cut(s) 213
PmeI GTTTAAAC 1 cut(s) 408
PpsI GAGTC 1 cut(s) 213
PshAI GACNNNNGTC 1 cut(s) 204
PsiI TTATAA 1 cut(s) 267
PspPI GGNCC 1 cut(s) 154
PsuI RGATCY 2 cut(s) 85, 364
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
RseI CAYNNNNRTG 1 cut(s) 104
Rsr2I CGGWCCG 1 cut(s) 154
RsrII CGGWCCG 1 cut(s) 154
SaqAI TTAA 4 cut(s) 131, 165, 300, 407
Sau3AI GATC 5 cut(s) 85, 246, 346, 364, 429
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 14
SetI ASST 6 cut(s) 52, 95, 307, 314, 379, 402
SinI GGWCC 1 cut(s) 154
SmiMI CAYNNNNRTG 1 cut(s) 104
SmlI CTYRAG 2 cut(s) 202, 437
SmoI CTYRAG 2 cut(s) 202, 437
Sse9I AATT 1 cut(s) 143
SsiI CCGC 2 cut(s) 152, 157
StyD4I CCNGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 1 cut(s) 379
TaqI TCGA 1 cut(s) 307
TasI AATT 1 cut(s) 143
TatI WGTACW 1 cut(s) 108
Tru1I TTAA 4 cut(s) 131, 165, 300, 407
Tru9I TTAA 4 cut(s) 131, 165, 300, 407
TseFI GTSAC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 154
XapI RAATTY 1 cut(s) 143
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.