Prupe.7G049500_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0010949
Physical Location & Seq
Reverse (-)
8634536 .. 8635279
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G049500.1

Sequence Viewer

Length: 744 bp
ATGGCCCCATGGGAAGTCCTTGACCTAGTTTGTCACCATCTTGACCCCAAATCTCTAGCCGTAGCCTCATGTGTGTGCAAGTCATGGCTCATTTCCATGTCCTCTGATCACCTTTGGAAGCCAATTTGCACATCCAATTTCCCTTCTCTCTCTACCCTCAAAATCACAAACCCTACCGTCCCCTACCGCCGCCTCTATGTCATTGGCTGCTCCGCTGCCAAACGCCGCCGACAAACGCCCCCGAAACCCCGCCTTCTTCTGGACAACCTCATCTTCACAATCAACATCTTCCGCCACAACAATTCATCATCAAACAGTTTCTGCACTCTCGTAAAACCCGGAAACGAGCTCACCCTCGATCCCAATGGCATCTTCAAGTTCGACATCGATGTTGATAACCACGATGTGTTTGAGGCATTGGAAGATGATGAGGCGGTGAGAGTGACGTGGAACGTGGTGTTGGAAGGGTGGAGGGGTGTTTTTGGGATGATGGAAAATTGTAAAGGAAAAGGAGGGGTGGAGGGTTGGTTTTCGGAGGAGCTTCCTTCTCCGGGGTGTTGTTGCGGTTCGAGTGCGGTTACTTGTAGTGGGATTGTGGCGGATTTGAAGTTGGGGTTTTGTGATGGAAGGAGGAAGGTGAAGAAAGTGAGTGTGGGGATTTTAAGTGTTGTAAATTGGAGATACGTGAGCGTTGATGATGCCCTGAGATACTTGCAACATTTTCTTTTACCTTGTGCTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

248

Amino Acids

27.51

Weight (kDa)

7.93

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 353
AdeI CACNNNGTG 1 cut(s) 406
AfiI CCNNNNNNNGG 2 cut(s) 259, 551
AgsI TTSAA 2 cut(s) 376, 607
AjiI CACGTC 1 cut(s) 447
AjuI GAANNNNNNNTTGG 4 cut(s) 356, 388, 443, 475
AluBI AGCT 2 cut(s) 349, 541
AluI AGCT 2 cut(s) 349, 541
Alw21I GWGCWC 1 cut(s) 351
AlwI GGATC 1 cut(s) 353
AlwNI CAGNNNCTG 1 cut(s) 321
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 207, 215
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 2 cut(s) 339, 552
AsuHPI GGTGA 5 cut(s) 26, 101, 343, 448, 649
BanII GRGCYC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 2 cut(s) 194, 202
BccI CCATC 3 cut(s) 45, 484, 617
BceAI ACGGC 1 cut(s) 44
BclI TGATCA 1 cut(s) 106
BcnI CCSGG 2 cut(s) 339, 552
BfaI CTAG 2 cut(s) 26, 56
BisI GCNGC 4 cut(s) 190, 208, 216, 226
BlsI GCNGC 4 cut(s) 191, 209, 217, 227
Bme1390I CCNGG 2 cut(s) 339, 552
BmgBI CACGTC 1 cut(s) 447
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 339, 552
BmsI GCATC 2 cut(s) 378, 688
BpuMI CCSGG 2 cut(s) 339, 552
Bsa29I ATCGAT 1 cut(s) 387
BsaAI YACGTR 1 cut(s) 685
BsaJI CCNNGG 2 cut(s) 8, 551
BsaXI ACNNNNNCTCC 2 cut(s) 512, 542
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 551
BseCI ATCGAT 1 cut(s) 387
BseDI CCNNGG 2 cut(s) 8, 551
BseGI GGATG 2 cut(s) 131, 492
BseLI CCNNNNNNNGG 2 cut(s) 259, 551
BseMII CTCAG 1 cut(s) 695
BseRI GAGGAG 1 cut(s) 551
BseXI GCAGC 2 cut(s) 194, 202
BsgI GTGCAG 1 cut(s) 307
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 387
BsiHKAI GWGCWC 1 cut(s) 351
BsiSI CCGG 2 cut(s) 339, 551
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 2 cut(s) 259, 551
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 2 cut(s) 106, 358
Bsp19I CCATGG 1 cut(s) 8
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 696
BspDI ATCGAT 1 cut(s) 387
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 353
BssECI CCNNGG 2 cut(s) 8, 551
BssMI GATC 2 cut(s) 106, 358
BssT1I CCWWGG 1 cut(s) 8
Bst4CI ACNGT 2 cut(s) 178, 317
BstBAI YACGTR 1 cut(s) 685
BstDEI CTNAG 1 cut(s) 704
BstDSI CCRYGG 1 cut(s) 8
BstF5I GGATG 2 cut(s) 131, 492
BstKTI GATC 2 cut(s) 109, 361
BstMBI GATC 2 cut(s) 106, 358
BstSCI CCNGG 2 cut(s) 337, 550
BstV1I GCAGC 2 cut(s) 194, 202
Bsu15I ATCGAT 1 cut(s) 387
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 387
BtgI CCRYGG 1 cut(s) 8
BtrI CACGTC 1 cut(s) 447
BtsCI GGATG 2 cut(s) 131, 492
CaiI CAGNNNCTG 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 387
CviAII CATG 4 cut(s) 9, 69, 84, 97
CviJI RGCY 8 cut(s) 5, 59, 65, 88, 121, 207, 349, 541
CviKI_1 RGCY 8 cut(s) 5, 59, 65, 88, 121, 207, 349, 541
DdeI CTNAG 1 cut(s) 704
DpnI GATC 2 cut(s) 108, 360
DpnII GATC 2 cut(s) 106, 358
DraIII CACNNNGTG 1 cut(s) 406
EciI GGCGGA 2 cut(s) 281, 614
Ecl136II GAGCTC 1 cut(s) 349
Eco130I CCWWGG 1 cut(s) 8
Eco24I GRGCYC 1 cut(s) 351
Eco53kI GAGCTC 1 cut(s) 349
EcoICRI GAGCTC 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 8
EcoT38I GRGCYC 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 8
FaeI CATG 4 cut(s) 12, 72, 87, 100
FaiI YATR 6 cut(s) 10, 70, 85, 98, 198, 742
FaqI GGGAC 1 cut(s) 164
FatI CATG 4 cut(s) 8, 68, 83, 96
FauI CCCGC 1 cut(s) 257
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 4 cut(s) 190, 208, 216, 226
FokI GGATG 2 cut(s) 118, 499
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 4 cut(s) 190, 208, 216, 226
FspBI CTAG 2 cut(s) 26, 56
GluI GCNGC 4 cut(s) 190, 208, 216, 226
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 339, 551
Hin1II CATG 4 cut(s) 12, 72, 87, 100
HpaII CCGG 2 cut(s) 339, 551
HphI GGTGA 5 cut(s) 26, 101, 343, 448, 649
Hpy188I TCNGA 2 cut(s) 106, 535
Hpy188III TCNNGA 2 cut(s) 41, 260
HpyAV CCTTC 6 cut(s) 153, 263, 458, 555, 621, 628
HpyCH4III ACNGT 2 cut(s) 178, 317
HpyCH4IV ACGT 3 cut(s) 446, 453, 684
HpyCH4V TGCA 4 cut(s) 78, 129, 324, 715
HpyF3I CTNAG 1 cut(s) 704
HpySE526I ACGT 3 cut(s) 446, 453, 684
Hsp92II CATG 4 cut(s) 12, 72, 87, 100
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 2 cut(s) 106, 358
LmnI GCTCC 2 cut(s) 215, 538
LpnPI CCDG 4 cut(s) 245, 352, 564, 716
Lsp1109I GCAGC 2 cut(s) 194, 202
LweI GCATC 2 cut(s) 378, 688
MaeI CTAG 2 cut(s) 26, 56
MaeII ACGT 3 cut(s) 446, 453, 684
MaeIII GTNAC 3 cut(s) 32, 442, 577
MalI GATC 2 cut(s) 108, 360
MboI GATC 2 cut(s) 106, 358
MboII GAAGA 6 cut(s) 248, 265, 280, 364, 434, 652
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 5 cut(s) 123, 136, 301, 496, 673
MmeI TCCRAC 1 cut(s) 441
MseI TTAA 1 cut(s) 662
MslI CAYNNNNRTG 2 cut(s) 73, 95
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 2 cut(s) 339, 551
MspR9I CCNGG 2 cut(s) 339, 552
NciI CCSGG 2 cut(s) 339, 552
NcoI CCATGG 1 cut(s) 8
NdeII GATC 2 cut(s) 106, 358
NlaIII CATG 4 cut(s) 12, 72, 87, 100
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 32, 442
PkrI GCNGC 4 cut(s) 191, 209, 217, 227
Ppu21I YACGTR 1 cut(s) 685
Psp124BI GAGCTC 1 cut(s) 351
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 321
RseI CAYNNNNRTG 2 cut(s) 73, 95
SacI GAGCTC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 662
SatI GCNGC 4 cut(s) 190, 208, 216, 226
Sau3AI GATC 2 cut(s) 106, 358
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 339, 552
SduI GDGCHC 1 cut(s) 351
SfaNI GCATC 2 cut(s) 378, 688
SmiMI CAYNNNNRTG 2 cut(s) 73, 95
Sse9I AATT 5 cut(s) 123, 136, 301, 496, 673
SspMI CTAG 2 cut(s) 26, 56
SstI GAGCTC 1 cut(s) 351
StyD4I CCNGG 2 cut(s) 337, 550
StyI CCWWGG 1 cut(s) 8
TaaI ACNGT 2 cut(s) 178, 317
TaiI ACGT 3 cut(s) 449, 456, 687
TaqI TCGA 4 cut(s) 357, 381, 387, 569
TasI AATT 5 cut(s) 123, 136, 301, 496, 673
TauI GCSGC 2 cut(s) 192, 228
Tru1I TTAA 1 cut(s) 662
Tru9I TTAA 1 cut(s) 662
TseFI GTSAC 2 cut(s) 32, 442
TseI GCWGC 2 cut(s) 207, 215
Tsp45I GTSAC 2 cut(s) 32, 442
TspDTI ATGAA 1 cut(s) 294
XspI CTAG 2 cut(s) 26, 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.