Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010949

Physical Location & Seq

Genomic Coordinates Forward (+)

9345749 .. 9346471

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1081300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCCTCATGGGAAGTCTTTGACCTAGTTTCTCACCACCTTGACCCCAAAACCCTAGCCATATCCTCTTGTGTCTGCAAGTCATGGTTCGTTTCCATGTCCTCCGACCACCTTTGGTGGCCCATTTGCACTTCCCATTTCCCTACTCTTTCTACCCTTAAACTCACTAACCCTACCGTCTCCTACAGCCGCCTCTATGTCATCGGTCGATCTGCCGCCAAACGCCGCCAGAAAACCCCCTCAAAACCTCGCCTCTCCCTTGATAGCCTCATCTTCACGATCAACATCTTCAACCCCAACTTATCAAGCAATGTCCTGTCTCTGGAAAAATCTGGAAGCGAACTCGTTATGGATCCCAGCGGGATTTTTAAGTTCCATATTGATGTTAGTGACTACAATGGATTTGAAGCGTGGGAGGATCGGGGAGCAGTGAGAGTGACATGGAATGTCGTGTTGGAAGGGTGGAGGGGTGTTTTTGAGATGATGGACTGTGAAGGGAAAGGGATGGAGGGGTGGTTTTCTGAGGAGCTTCCTTCGCCGGCGGGGTGCTGCTCGAGCGTGGTTACTAGCGGAATTGTGGCGGATTTGAAGTTGGGGTTTTGTGATGGGAGGAGGGTGAAGAAAGTGAGTGTTGGGATGTTGAGTGTTGGAGATTGGAGATATGTGAGTATTGATGATGCTCTAAGATACTTGCAACACTTTCTTCTACCTTGTGTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

241

Amino Acids

26.9

Weight (kDa)

6.59

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03920 AT5G03930 AT5G04010
fragaria_vesca	FvH4_2g38461 FvH4_4g15460 FvH4_4g15570 FvH4_4g15602 FvH4_6g24810
malus_domestica	MD14G1081300.v1.1
prunus_persica	Prupe.7G049500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0484581
rosa_laevigata	RLG00000023218
rosa_multiflora	Rmu_sc0000295.1_g000040 Rmu_sc0016014.1_g000005
rosa_roxburghii	Rroxscaffold_6G00397620
rosa_rugosa	Rorug03G0211700
rosa_samantha	Rh3AG262600 Rh3BG297900 Rh3CG295000 Rh3DG291200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	190, 216, 226, 360, 542, 570, 581
AclWI	GGATC	3 cut(s)	347, 360, 426
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	3 cut(s)	292, 407, 589
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	1 cut(s)	529
AluI	AGCT	1 cut(s)	529
Alw26I	GTCTC	2 cut(s)	184, 324
AlwI	GGATC	3 cut(s)	347, 360, 426
Ama87I	CYCGRG	1 cut(s)	553
AoxI	GGCC	2 cut(s)	3, 119
ApeKI	GCWGC	1 cut(s)	549
AspS9I	GGNCC	1 cut(s)	120
AsuHPI	GGTGA	2 cut(s)	26, 628
AvaI	CYCGRG	1 cut(s)	553
BamHI	GGATCC	1 cut(s)	352
BbvI	GCAGC	1 cut(s)	536
BccI	CCATC	3 cut(s)	478, 499, 599
BcoDI	GTCTC	2 cut(s)	184, 324
BfaI	CTAG	3 cut(s)	26, 56, 567
BfmI	CTRYAG	1 cut(s)	184
BisI	GCNGC	4 cut(s)	190, 216, 226, 550
BlsI	GCNGC	4 cut(s)	191, 217, 227, 551
BmeT110I	CYCGRG	1 cut(s)	553
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	1 cut(s)	354
BmsI	GCATC	1 cut(s)	667
BsaBI	GATNNNNATC	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse118I	RCCGGY	1 cut(s)	538
Bse3DI	GCAATG	1 cut(s)	316
Bse8I	GATNNNNATC	1 cut(s)	284
BseGI	GGATG	2 cut(s)	510, 642
BseJI	GATNNNNATC	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	513
BseRI	GAGGAG	2 cut(s)	539, 625
BseXI	GCAGC	1 cut(s)	536
BseYI	CCCAGC	1 cut(s)	356
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	2 cut(s)	5, 121
BsiEI	CGRYCG	1 cut(s)	208
BsiHKCI	CYCGRG	1 cut(s)	553
BsiSI	CCGG	1 cut(s)	539
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	2 cut(s)	184, 324
BsmBI	CGTCTC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	5, 121
BsoBI	CYCGRG	1 cut(s)	553
Bsp143I	GATC	4 cut(s)	209, 279, 352, 418
BspACI	CCGC	7 cut(s)	190, 216, 226, 360, 542, 570, 581
BspANI	GGCC	2 cut(s)	5, 121
BspCNI	CTCAG	1 cut(s)	514
BspLI	GGNNCC	1 cut(s)	354
BspPI	GGATC	3 cut(s)	347, 360, 426
BsrDI	GCAATG	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	538
BssAI	RCCGGY	1 cut(s)	538
BssMI	GATC	4 cut(s)	209, 279, 352, 418
Bst4CI	ACNGT	2 cut(s)	178, 491
BstC8I	GCNNGC	1 cut(s)	540
BstDEI	CTNAG	2 cut(s)	522, 683
BstF5I	GGATG	2 cut(s)	510, 642
BstKTI	GATC	4 cut(s)	212, 282, 355, 421
BstMAI	GTCTC	2 cut(s)	184, 324
BstMBI	GATC	4 cut(s)	209, 279, 352, 418
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	2 cut(s)	535, 555
BstSFI	CTRYAG	1 cut(s)	184
BstV1I	GCAGC	1 cut(s)	536
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	2 cut(s)	5, 121
BtsCI	GGATG	2 cut(s)	510, 642
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	1 cut(s)	540
Cfr10I	RCCGGY	1 cut(s)	538
Cfr13I	GGNCC	1 cut(s)	120
CviAII	CATG	4 cut(s)	9, 84, 97, 441
CviJI	RGCY	6 cut(s)	5, 59, 121, 189, 267, 529
CviKI_1	RGCY	6 cut(s)	5, 59, 121, 189, 267, 529
DdeI	CTNAG	2 cut(s)	522, 683
DpnI	GATC	4 cut(s)	211, 281, 354, 420
DpnII	GATC	4 cut(s)	209, 279, 352, 418
EciI	GGCGGA	1 cut(s)	596
Eco88I	CYCGRG	1 cut(s)	553
Esp3I	CGTCTC	1 cut(s)	184
FaeI	CATG	4 cut(s)	12, 87, 100, 444
FatI	CATG	4 cut(s)	8, 83, 96, 440
FauI	CCCGC	2 cut(s)	353, 535
Fnu4HI	GCNGC	4 cut(s)	190, 216, 226, 550
FokI	GGATG	2 cut(s)	517, 649
Fsp4HI	GCNGC	4 cut(s)	190, 216, 226, 550
FspBI	CTAG	3 cut(s)	26, 56, 567
GluI	GCNGC	4 cut(s)	190, 216, 226, 550
GsaI	CCCAGC	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	5, 121
HapII	CCGG	1 cut(s)	539
Hin1II	CATG	4 cut(s)	12, 87, 100, 444
HpaII	CCGG	1 cut(s)	539
HphI	GGTGA	2 cut(s)	26, 628
Hpy188I	TCNGA	2 cut(s)	106, 523
Hpy188III	TCNNGA	3 cut(s)	277, 323, 333
HpyAV	CCTTC	3 cut(s)	452, 488, 543
HpyCH4III	ACNGT	2 cut(s)	178, 491
HpyCH4V	TGCA	3 cut(s)	78, 129, 694
HpyF10VI	GCNNNNNNNGC	2 cut(s)	535, 555
HpyF3I	CTNAG	2 cut(s)	522, 683
Hsp92II	CATG	4 cut(s)	12, 87, 100, 444
KroI	GCCGGC	1 cut(s)	538
KroNI	GCCGGC	1 cut(s)	540
Kzo9I	GATC	4 cut(s)	209, 279, 352, 418
LmnI	GCTCC	2 cut(s)	425, 526
LpnPI	CCDG	6 cut(s)	242, 308, 318, 329, 370, 552
Lsp1109I	GCAGC	1 cut(s)	536
LweI	GCATC	1 cut(s)	667
MaeI	CTAG	3 cut(s)	26, 56, 567
MaeIII	GTNAC	3 cut(s)	389, 436, 562
MalI	GATC	4 cut(s)	211, 281, 354, 420
MboI	GATC	4 cut(s)	209, 279, 352, 418
MboII	GAAGA	4 cut(s)	265, 280, 631, 695
MflI	RGATCY	1 cut(s)	352
MluCI	AATT	1 cut(s)	573
MmeI	TCCRAC	3 cut(s)	129, 435, 628
MreI	CGCCGGCG	1 cut(s)	538
MroNI	GCCGGC	1 cut(s)	538
MseI	TTAA	2 cut(s)	159, 369
MslI	CAYNNNNRTG	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	360
MspI	CCGG	1 cut(s)	539
MwoI	GCNNNNNNNGC	2 cut(s)	535, 555
NaeI	GCCGGC	1 cut(s)	540
NdeII	GATC	4 cut(s)	209, 279, 352, 418
NgoMIV	GCCGGC	1 cut(s)	538
NlaIII	CATG	4 cut(s)	12, 87, 100, 444
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	2 cut(s)	389, 436
PaeR7I	CTCGAG	1 cut(s)	553
PdiI	GCCGGC	1 cut(s)	540
PkrI	GCNGC	4 cut(s)	191, 217, 227, 551
PspFI	CCCAGC	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	120
PspXI	VCTCGAGB	1 cut(s)	553
PsuI	RGATCY	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	159, 369
SatI	GCNGC	4 cut(s)	190, 216, 226, 550
Sau3AI	GATC	4 cut(s)	209, 279, 352, 418
Sau96I	GGNCC	1 cut(s)	120
SetI	ASST	6 cut(s)	27, 42, 114, 250, 531, 712
SfaNI	GCATC	1 cut(s)	667
SfcI	CTRYAG	1 cut(s)	184
Sfr274I	CTCGAG	1 cut(s)	553
SgrAI	CRCCGGYG	1 cut(s)	538
SlaI	CTCGAG	1 cut(s)	553
SmiMI	CAYNNNNRTG	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	553
SmoI	CTYRAG	1 cut(s)	553
Sse9I	AATT	1 cut(s)	573
SsiI	CCGC	7 cut(s)	190, 216, 226, 360, 542, 570, 581
SspMI	CTAG	3 cut(s)	26, 56, 567
TaaI	ACNGT	2 cut(s)	178, 491
TaqI	TCGA	2 cut(s)	208, 554
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	1 cut(s)	573
TauI	GCSGC	3 cut(s)	192, 218, 228
Tru1I	TTAA	2 cut(s)	159, 369
Tru9I	TTAA	2 cut(s)	159, 369
TscAI	CASTG	1 cut(s)	435
TseFI	GTSAC	2 cut(s)	389, 436
TseI	GCWGC	1 cut(s)	549
Tsp45I	GTSAC	2 cut(s)	389, 436
TspRI	CASTG	1 cut(s)	435
XhoI	CTCGAG	1 cut(s)	553
XspI	CTAG	3 cut(s)	26, 56, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.