Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0010949

Physical Location & Seq

Genomic Coordinates Reverse (-)

29209405 .. 29212117

Gene Structure 2713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG262600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCGGAAGCTTCAGGAGCACCACAATCTGGAGGATCGAGATTGGTTGTTCGAGCTGATGAGTTGCATTTCCTCCGACCACATTTGGAAGCCCATTTGCACCACCCATTACCCTTCTCTCTCTAATCTCAAGCTCACCATTCCCTACTATCGCCTCTACGCCATGGCCTCTGCCGCAGCCAAACGCCGCTTCCAGACCCCCTCCAAACCCTGCCTTGCCCTCGACAACCTCATCTTCACCGTCAACGTCTTCAACCACAAGAACGTTCTGTGTCTCGAAAAACCAGGGAACGAGCTAGTCATGGATTCCAATGGGGTGTTCAAGTTCGATATTGCCGTCGATAACTACGAGTTTGAAGCTGTGGCGTTGGAGTCGGTGAGAGTTACGTGGAATGTGGTGTTGAAAGGGTGGAAAGGGGTTTTTAATATGTTGGAATGTCAAGGGAACAAAGGGGTCGACTGGTGGTTCTGGGAGGAGCTGCCTTTGCCGGGGTGTTGCTCGGGCCTCGTCGATAGCGGTGTCGTGGCAGATTTGAGGTTGGAGTTTACTGATAGCAAAAACAGTGTTGATGTTGGGCGGATCAACAAAGTGAGCGTGGGGATTCGACTTCCTGTCAAAATATTCAACTTCAAAGGAGCTCACATCCTGGACAGATTCCAGCTTGGAACTGATATAACTCATTTCTTGGAGCAGCGACCACAGCCCGGTTTTCAACACGAAACTGATGATAATGCATCCCATCAGCAAAAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

251

Amino Acids

28.82

Weight (kDa)

6.3

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03920 AT5G03930 AT5G04010
fragaria_vesca	FvH4_2g38461 FvH4_4g15460 FvH4_4g15570 FvH4_4g15602 FvH4_6g24810
malus_domestica	MD14G1081300.v1.1
prunus_persica	Prupe.7G049500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0484581
rosa_laevigata	RLG00000023218
rosa_multiflora	Rmu_sc0000295.1_g000040 Rmu_sc0016014.1_g000005
rosa_roxburghii	Rroxscaffold_6G00397620
rosa_rugosa	Rorug03G0211700
rosa_samantha	Rh3AG262600 Rh3BG297900 Rh3CG295000 Rh3DG291200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	28
AccI	GTMKAC	1 cut(s)	456
AciI	CCGC	5 cut(s)	4, 174, 187, 516, 577
AclI	AACGTT	1 cut(s)	264
AclWI	GGATC	2 cut(s)	42, 587
AfiI	CCNNNNNNNGG	3 cut(s)	28, 488, 704
AgsI	TTSAA	7 cut(s)	253, 322, 356, 403, 625, 631, 713
AhdI	GACNNNNNGTC	1 cut(s)	611
AjnI	CCWGG	2 cut(s)	283, 645
AjuI	GAANNNNNNNTTGG	4 cut(s)	173, 205, 302, 334
AluBI	AGCT	8 cut(s)	10, 55, 133, 295, 359, 478, 638, 661
AluI	AGCT	8 cut(s)	10, 55, 133, 295, 359, 478, 638, 661
Alw21I	GWGCWC	2 cut(s)	21, 640
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	2 cut(s)	42, 587
Ama87I	CYCGRG	1 cut(s)	499
AoxI	GGCC	2 cut(s)	165, 502
ApeKI	GCWGC	3 cut(s)	176, 478, 691
AspS9I	GGNCC	1 cut(s)	502
AsuC2I	CCSGG	2 cut(s)	489, 705
AsuHPI	GGTGA	3 cut(s)	127, 229, 388
AvaI	CYCGRG	1 cut(s)	499
BanII	GRGCYC	1 cut(s)	640
BbsI	GAAGAC	1 cut(s)	241
Bbv12I	GWGCWC	2 cut(s)	21, 640
BbvI	GCAGC	3 cut(s)	188, 465, 703
BccI	CCATC	1 cut(s)	747
BceAI	ACGGC	1 cut(s)	320
BciT130I	CCWGG	2 cut(s)	285, 647
BcnI	CCSGG	2 cut(s)	489, 705
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	1 cut(s)	296
BisI	GCNGC	5 cut(s)	174, 177, 187, 479, 692
BlsI	GCNGC	5 cut(s)	175, 178, 188, 480, 693
Bme1390I	CCNGG	4 cut(s)	285, 489, 647, 705
BmeRI	GACNNNNNGTC	1 cut(s)	611
BmeT110I	CYCGRG	1 cut(s)	499
BmgT120I	GGNCC	1 cut(s)	502
BmrFI	CCNGG	4 cut(s)	285, 489, 647, 705
BmsI	GCATC	1 cut(s)	743
BpiI	GAAGAC	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	2 cut(s)	489, 705
BsaAI	YACGTR	1 cut(s)	387
BsaJI	CCNNGG	3 cut(s)	162, 284, 488
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 488, 704
Bse1I	ACTGG	1 cut(s)	464
BseBI	CCWGG	2 cut(s)	285, 647
BseDI	CCNNGG	3 cut(s)	162, 284, 488
BseGI	GGATG	2 cut(s)	642, 734
BseLI	CCNNNNNNNGG	3 cut(s)	28, 488, 704
BseNI	ACTGG	1 cut(s)	464
BseRI	GAGGAG	1 cut(s)	488
BseXI	GCAGC	3 cut(s)	188, 465, 703
BshFI	GGCC	2 cut(s)	167, 504
BsiHKAI	GWGCWC	2 cut(s)	21, 640
BsiHKCI	CYCGRG	1 cut(s)	499
BsiSI	CCGG	2 cut(s)	488, 705
BslI	CCNNNNNNNGG	3 cut(s)	28, 488, 704
BsmAI	GTCTC	1 cut(s)	278
BsnI	GGCC	2 cut(s)	167, 504
BsoBI	CYCGRG	1 cut(s)	499
Bsp1286I	GDGCHC	2 cut(s)	21, 640
Bsp143I	GATC	2 cut(s)	34, 579
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	5 cut(s)	4, 174, 187, 516, 577
BspANI	GGCC	2 cut(s)	167, 504
BspPI	GGATC	2 cut(s)	42, 587
BsrI	ACTGG	1 cut(s)	464
BssECI	CCNNGG	3 cut(s)	162, 284, 488
BssMI	GATC	2 cut(s)	34, 579
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	2 cut(s)	285, 647
Bst4CI	ACNGT	2 cut(s)	241, 563
BstBAI	YACGTR	1 cut(s)	387
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	642, 734
BstKTI	GATC	2 cut(s)	37, 582
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	2 cut(s)	34, 579
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 173, 484, 700
BstNI	CCWGG	2 cut(s)	285, 647
BstSCI	CCNGG	4 cut(s)	283, 487, 645, 703
BstV1I	GCAGC	3 cut(s)	188, 465, 703
BstV2I	GAAGAC	1 cut(s)	241
BsuRI	GGCC	2 cut(s)	167, 504
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	642, 734
BtsIMutI	CAGTG	1 cut(s)	568
Cfr13I	GGNCC	1 cut(s)	502
CviAII	CATG	2 cut(s)	163, 301
DpnI	GATC	2 cut(s)	36, 581
DpnII	GATC	2 cut(s)	34, 579
DriI	GACNNNNNGTC	1 cut(s)	611
Eam1105I	GACNNNNNGTC	1 cut(s)	611
EciI	GGCGGA	1 cut(s)	592
Ecl136II	GAGCTC	1 cut(s)	638
Eco130I	CCWWGG	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	640
Eco53kI	GAGCTC	1 cut(s)	638
Eco88I	CYCGRG	1 cut(s)	499
EcoICRI	GAGCTC	1 cut(s)	638
EcoRII	CCWGG	2 cut(s)	283, 645
EcoT14I	CCWWGG	1 cut(s)	162
EcoT22I	ATGCAT	1 cut(s)	736
EcoT38I	GRGCYC	1 cut(s)	640
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	2 cut(s)	166, 304
FaiI	YATR	4 cut(s)	164, 302, 428, 674
FatI	CATG	2 cut(s)	162, 300
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	5 cut(s)	174, 177, 187, 479, 692
FokI	GGATG	2 cut(s)	629, 721
FriOI	GRGCYC	1 cut(s)	640
Fsp4HI	GCNGC	5 cut(s)	174, 177, 187, 479, 692
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	5 cut(s)	174, 177, 187, 479, 692
GsuI	CTGGAG	1 cut(s)	50
HaeIII	GGCC	2 cut(s)	167, 504
HapII	CCGG	2 cut(s)	488, 705
Hin1II	CATG	2 cut(s)	166, 304
HincII	GTYRAC	2 cut(s)	244, 457
HindII	GTYRAC	2 cut(s)	244, 457
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	4 cut(s)	305, 371, 601, 654
HpaII	CCGG	2 cut(s)	488, 705
HphI	GGTGA	3 cut(s)	127, 229, 388
Hpy166II	GTNNAC	3 cut(s)	244, 457, 546
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	5 cut(s)	14, 29, 38, 193, 275
Hpy8I	GTNNAC	3 cut(s)	244, 457, 546
Hpy99I	CGWCG	2 cut(s)	341, 512
HpyAV	CCTTC	1 cut(s)	123
HpyCH4III	ACNGT	2 cut(s)	241, 563
HpyCH4IV	ACGT	3 cut(s)	246, 264, 386
HpyCH4V	TGCA	3 cut(s)	66, 99, 734
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 173, 484, 700
HpySE526I	ACGT	3 cut(s)	246, 264, 386
Hsp92II	CATG	2 cut(s)	166, 304
Kzo9I	GATC	2 cut(s)	34, 579
LmnI	GCTCC	4 cut(s)	16, 475, 635, 688
Lsp1109I	GCAGC	3 cut(s)	188, 465, 703
LweI	GCATC	1 cut(s)	743
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	3 cut(s)	246, 264, 386
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	2 cut(s)	36, 581
MboI	GATC	2 cut(s)	34, 579
MboII	GAAGA	2 cut(s)	226, 241
MhlI	GDGCHC	2 cut(s)	21, 640
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	4 cut(s)	99, 348, 411, 519
Mph1103I	ATGCAT	1 cut(s)	736
MseI	TTAA	1 cut(s)	423
MspI	CCGG	2 cut(s)	488, 705
MspR9I	CCNGG	4 cut(s)	285, 489, 647, 705
MvaI	CCWGG	2 cut(s)	285, 647
MwoI	GCNNNNNNNGC	4 cut(s)	16, 173, 484, 700
NciI	CCSGG	2 cut(s)	489, 705
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	2 cut(s)	34, 579
NlaIII	CATG	2 cut(s)	166, 304
NsiI	ATGCAT	1 cut(s)	736
PcsI	WCGNNNNNNNCGW	2 cut(s)	333, 345
PfeI	GAWTC	3 cut(s)	305, 601, 654
PflMI	CCANNNNNTGG	1 cut(s)	28
PfoI	TCCNGGA	1 cut(s)	645
PkrI	GCNGC	5 cut(s)	175, 178, 188, 480, 693
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
Ppu21I	YACGTR	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	640
Psp1406I	AACGTT	1 cut(s)	264
Psp6I	CCWGG	2 cut(s)	283, 645
PspGI	CCWGG	2 cut(s)	283, 645
PspPI	GGNCC	1 cut(s)	502
SacI	GAGCTC	1 cut(s)	640
SalI	GTCGAC	1 cut(s)	455
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	5 cut(s)	174, 177, 187, 479, 692
Sau3AI	GATC	2 cut(s)	34, 579
Sau96I	GGNCC	1 cut(s)	502
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	4 cut(s)	285, 489, 647, 705
SduI	GDGCHC	2 cut(s)	21, 640
SfaNI	GCATC	1 cut(s)	743
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SsiI	CCGC	5 cut(s)	4, 174, 187, 516, 577
SspI	AATATT	1 cut(s)	621
SspMI	CTAG	1 cut(s)	296
SstI	GAGCTC	1 cut(s)	640
StyD4I	CCNGG	4 cut(s)	283, 487, 645, 703
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	241, 563
TaiI	ACGT	3 cut(s)	249, 267, 389
TaqI	TCGA	9 cut(s)	37, 51, 222, 276, 327, 339, 456, 510, 604
TauI	GCSGC	2 cut(s)	176, 189
TfiI	GAWTC	3 cut(s)	305, 601, 654
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	1 cut(s)	568
TseI	GCWGC	3 cut(s)	176, 478, 691
TspRI	CASTG	1 cut(s)	568
Van91I	CCANNNNNTGG	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	456
XspI	CTAG	1 cut(s)	296
Zsp2I	ATGCAT	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.