Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010949

Physical Location & Seq

Genomic Coordinates Forward (+)

1059504 .. 1060154

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G03930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGATGGCCAAAGAAGGAGAACATTCCGGAGCTAAGGAAGTGAAACTTACCAAACCCAAAATTTCCTTGTCGGATCTCACCTTTGTCATTTACGTAACTACCCGAGAAAAGCTATCATCTTCTACCATAAGTTGTGAGGAGATACCACTTAAGAAATGTGGCGCGGAGCTAGAGTGTGGCTCCAATGATCGATTCCATATACAAGTCGAAAACTTGAGCCATATGGGAATCTCCAAGTCTAGAATGGCTGGTGTAAAGATCGAGTGCGAGGTCATTTATAAGGAAGACTCGGAAGACGAGGCGGTAGTTAGAATCGTTAATGCTGAAAGGCCATTAGGCACAAACTTTGGATGGCTGAACAACGATCTTCTTGCTCCACTAGCTCATCGTGGTCTAACAGCCGAAATCCAGCTGAGTTTCAACAGCGAGTTATTGGACAAGATCGACCTCCAGATATTCCACCGAGGCGAGGGGAGATATTTTTCCCAAGACGATACTCTTGGTTATCTTCAATGTTTTTTCCCATCTAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

178

Amino Acids

20.0

Weight (kDa)

5.42

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03920 AT5G03930 AT5G04010
fragaria_vesca	FvH4_2g38461 FvH4_4g15460 FvH4_4g15570 FvH4_4g15602 FvH4_6g24810
malus_domestica	MD14G1081300.v1.1
prunus_persica	Prupe.7G049500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0484581
rosa_laevigata	RLG00000023218
rosa_multiflora	Rmu_sc0000295.1_g000040 Rmu_sc0016014.1_g000005
rosa_roxburghii	Rroxscaffold_6G00397620
rosa_rugosa	Rorug03G0211700
rosa_samantha	Rh3AG262600 Rh3BG297900 Rh3CG295000 Rh3DG291200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	279
AccII	CGCG	1 cut(s)	164
AccIII	TCCGGA	1 cut(s)	26
AciI	CCGC	2 cut(s)	164, 302
AclWI	GGATC	1 cut(s)	81
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	469
AflII	CTTAAG	1 cut(s)	149
AgsI	TTSAA	2 cut(s)	421, 512
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AluBI	AGCT	5 cut(s)	32, 112, 169, 383, 412
AluI	AGCT	5 cut(s)	32, 112, 169, 383, 412
AlwI	GGATC	1 cut(s)	81
Ama87I	CYCGRG	1 cut(s)	102
Aor13HI	TCCGGA	1 cut(s)	26
AoxI	GGCC	2 cut(s)	6, 329
ApoI	RAATTY	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	70
AvaI	CYCGRG	1 cut(s)	102
BalI	TGGCCA	1 cut(s)	8
BbsI	GAAGAC	2 cut(s)	291, 300
BccI	CCATC	2 cut(s)	345, 532
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BfaI	CTAG	3 cut(s)	170, 240, 380
BfrI	CTTAAG	1 cut(s)	149
BmeT110I	CYCGRG	1 cut(s)	102
BmiI	GGNNCC	1 cut(s)	181
BpiI	GAAGAC	2 cut(s)	291, 300
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpmI	CTGGAG	1 cut(s)	434
Bpu10I	CCTNAGC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	235
Bsa29I	ATCGAT	1 cut(s)	190
BsaAI	YACGTR	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	463
BsaWI	WCCGGW	1 cut(s)	26
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
BseAI	TCCGGA	1 cut(s)	26
BseCI	ATCGAT	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	463
BseGI	GGATG	1 cut(s)	356
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseMII	CTCAG	1 cut(s)	404
BseRI	GAGGAG	1 cut(s)	152
Bsh1236I	CGCG	1 cut(s)	164
BshFI	GGCC	2 cut(s)	8, 331
BshVI	ATCGAT	1 cut(s)	190
BsiHKCI	CYCGRG	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	469
BsnI	GGCC	2 cut(s)	8, 331
BsoBI	CYCGRG	1 cut(s)	102
Bsp13I	TCCGGA	1 cut(s)	26
Bsp143I	GATC	5 cut(s)	73, 187, 258, 364, 441
BspACI	CCGC	2 cut(s)	164, 302
BspANI	GGCC	2 cut(s)	8, 331
BspCNI	CTCAG	1 cut(s)	405
BspDI	ATCGAT	1 cut(s)	190
BspEI	TCCGGA	1 cut(s)	26
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	181
BspPI	GGATC	1 cut(s)	81
BspTI	CTTAAG	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	463
BssMI	GATC	5 cut(s)	73, 187, 258, 364, 441
BstAFI	CTTAAG	1 cut(s)	149
BstBAI	YACGTR	1 cut(s)	94
BstDEI	CTNAG	2 cut(s)	33, 413
BstF5I	GGATG	1 cut(s)	356
BstFNI	CGCG	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	5 cut(s)	76, 190, 261, 367, 444
BstMBI	GATC	5 cut(s)	73, 187, 258, 364, 441
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstSNI	TACGTA	1 cut(s)	94
BstUI	CGCG	1 cut(s)	164
BstV2I	GAAGAC	2 cut(s)	291, 300
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
Bsu15I	ATCGAT	1 cut(s)	190
BsuRI	GGCC	2 cut(s)	8, 331
BsuTUI	ATCGAT	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	356
CfoI	GCGC	1 cut(s)	164
ClaI	ATCGAT	1 cut(s)	190
DdeI	CTNAG	2 cut(s)	33, 413
DpnI	GATC	5 cut(s)	75, 189, 260, 366, 443
DpnII	GATC	5 cut(s)	73, 187, 258, 364, 441
EaeI	YGGCCR	1 cut(s)	6
Eco105I	TACGTA	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	102
FaiI	YATR	6 cut(s)	128, 198, 200, 222, 224, 279
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FauNDI	CATATG	1 cut(s)	222
FokI	GGATG	1 cut(s)	363
FspBI	CTAG	3 cut(s)	170, 240, 380
GlaI	GCGC	1 cut(s)	163
GsuI	CTGGAG	1 cut(s)	434
HaeIII	GGCC	2 cut(s)	8, 331
HapII	CCGG	1 cut(s)	27
HhaI	GCGC	1 cut(s)	164
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HinfI	GANTC	4 cut(s)	192, 228, 287, 312
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	1 cut(s)	70
Hpy188I	TCNGA	2 cut(s)	73, 292
Hpy188III	TCNNGA	3 cut(s)	27, 240, 451
HpyAV	CCTTC	1 cut(s)	8
HpyCH4IV	ACGT	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	2 cut(s)	33, 413
HpySE526I	ACGT	1 cut(s)	93
HspAI	GCGC	1 cut(s)	162
Kpn2I	TCCGGA	1 cut(s)	26
Kzo9I	GATC	5 cut(s)	73, 187, 258, 364, 441
LmnI	GCTCC	4 cut(s)	29, 166, 185, 379
LpnPI	CCDG	4 cut(s)	40, 234, 422, 464
MaeI	CTAG	3 cut(s)	170, 240, 380
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	5 cut(s)	75, 189, 260, 366, 443
MboI	GATC	5 cut(s)	73, 187, 258, 364, 441
MboII	GAAGA	5 cut(s)	111, 296, 305, 359, 500
MflI	RGATCY	1 cut(s)	73
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	1 cut(s)	60
MluNI	TGGCCA	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	6 cut(s)	130, 262, 292, 458, 458, 463
Mox20I	TGGCCA	1 cut(s)	8
MroI	TCCGGA	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	2 cut(s)	150, 318
Msp20I	TGGCCA	1 cut(s)	8
MspA1I	CMGCKG	1 cut(s)	412
MspCI	CTTAAG	1 cut(s)	149
MspI	CCGG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	380
NdeI	CATATG	1 cut(s)	222
NdeII	GATC	5 cut(s)	73, 187, 258, 364, 441
NlaIV	GGNNCC	1 cut(s)	181
PfeI	GAWTC	3 cut(s)	192, 228, 312
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
Ppu21I	YACGTR	1 cut(s)	94
PsiI	TTATAA	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	412
SaqAI	TTAA	2 cut(s)	150, 318
Sau3AI	GATC	5 cut(s)	73, 187, 258, 364, 441
SchI	GAGTC	1 cut(s)	281
SetI	ASST	9 cut(s)	34, 83, 96, 114, 171, 273, 385, 414, 450
SmlI	CTYRAG	2 cut(s)	149, 214
SmoI	CTYRAG	2 cut(s)	149, 214
SnaBI	TACGTA	1 cut(s)	94
Sse9I	AATT	1 cut(s)	60
SsiI	CCGC	2 cut(s)	164, 302
SspMI	CTAG	3 cut(s)	170, 240, 380
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	4 cut(s)	190, 207, 261, 444
TasI	AATT	1 cut(s)	60
TfiI	GAWTC	3 cut(s)	192, 228, 312
Tru1I	TTAA	2 cut(s)	150, 318
Tru9I	TTAA	2 cut(s)	150, 318
Vha464I	CTTAAG	1 cut(s)	149
XapI	RAATTY	1 cut(s)	60
XbaI	TCTAGA	1 cut(s)	239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XspI	CTAG	3 cut(s)	170, 240, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.