FvH4_6g24810

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010949
Physical Location & Seq
Forward (+)
18797325 .. 18798460
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24810.t1

Sequence Viewer

Length: 738 bp
ATGCTTCCATGGCAAGTCTTTGACCTTGTTTCTCACCATCTTGACCCCAAAACCCTGGCCGTTGCCTCTTGCGTCTGCAAGTCATGGTTCGCTTGCTTCTCCTCCGACCACGTTTGGCACCCCATTTGCACCACCCATTTCCCTTCTCTCTCTAACCTAAAGCTCACAAACGCCGCCCTTTCCTATTACCGCCTCTACGCCATGGCCTCCGCGGCTGCCAAGCGCCGCTTCCAGTCCCCATCCAAACCCTCCCTTGCCCTCCACAACCTCATCTTCGCAGTCAACGTCTTCAACCACAACAACGTTCTGATCGTAAGTCTTGAAAAACCCGGGGACGAGCTAGTCGTGGATGACAACGGTGTTTTCAAGTTCGATATTGATGTCGATAACTACGAGTATGAAGGTGTGGTGCTGGAGTCGGTGAGAGTTACGTGGAATGTGGTGTTGAAAGGGTGGAGAGGGGTTTTTAATATGTTGGAATGCCAAGGGAAGAAAGGGGTCGACTGGTGGTTCTGGGAGGAGCTGCCTTTGCCTGGCTGTTGCGCCAGCCTCGTCGATAGTGGTGTCGTGGCGGATTTGAGGTTGGAGTTTACTGATGATTCCAAAAGGGGTCAAAACAATGTTGATCATGTTGGGCGGATTAACAAAGTGAGCGTGGGGATGTTGAGTACAACAAAGTTGAGGTATGTCGGTGTAGATGATGGTCTAAGATACTTGCAGCACTTCCTTTATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

246

Amino Acids

27.79

Weight (kDa)

6.29

Isoelectric Point (pI)

30.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 12 - 44 1e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 341
AccB1I GGYRCC 1 cut(s) 117
AccI GTMKAC 1 cut(s) 501
AccII CGCG 1 cut(s) 212
AciI CCGC 7 cut(s) 174, 190, 210, 212, 226, 572, 637
AclI AACGTT 1 cut(s) 303
AcoI YGGCCR 1 cut(s) 57
AfaI GTAC 1 cut(s) 670
AfiI CCNNNNNNNGG 1 cut(s) 533
AgsI TTSAA 4 cut(s) 292, 323, 367, 448
AjnI CCWGG 2 cut(s) 54, 532
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 3 cut(s) 163, 340, 523
AluI AGCT 3 cut(s) 163, 340, 523
Ama87I CYCGRG 1 cut(s) 329
AoxI GGCC 2 cut(s) 57, 204
ApeKI GCWGC 3 cut(s) 215, 523, 718
AspLEI GCGC 2 cut(s) 225, 545
AsuC2I CCSGG 2 cut(s) 330, 331
AsuHPI GGTGA 2 cut(s) 26, 433
AvaI CYCGRG 1 cut(s) 329
BanI GGYRCC 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 280
BbvI GCAGC 3 cut(s) 202, 510, 730
BccI CCATC 3 cut(s) 45, 247, 695
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 2 cut(s) 56, 534
BclI TGATCA 1 cut(s) 625
BcnI CCSGG 2 cut(s) 330, 331
BfaI CTAG 1 cut(s) 341
BfoI RGCGCY 1 cut(s) 226
BglI GCCNNNNNGGC 1 cut(s) 212
BisI GCNGC 6 cut(s) 174, 213, 216, 226, 524, 719
BlsI GCNGC 6 cut(s) 175, 214, 217, 227, 525, 720
Bme1390I CCNGG 4 cut(s) 56, 330, 331, 534
BmeT110I CYCGRG 1 cut(s) 329
BmiI GGNNCC 1 cut(s) 119
BmrFI CCNGG 4 cut(s) 56, 330, 331, 534
BpiI GAAGAC 1 cut(s) 280
BpmI CTGGAG 1 cut(s) 434
BpuMI CCSGG 2 cut(s) 330, 331
BsaAI YACGTR 1 cut(s) 432
BsaJI CCNNGG 7 cut(s) 8, 54, 201, 210, 329, 330, 484
Bsc4I CCNNNNNNNGG 1 cut(s) 533
Bse1I ACTGG 2 cut(s) 232, 509
BseBI CCWGG 2 cut(s) 56, 534
BseDI CCNNGG 7 cut(s) 8, 54, 201, 210, 329, 330, 484
BseGI GGATG 3 cut(s) 239, 355, 666
BseLI CCNNNNNNNGG 1 cut(s) 533
BseNI ACTGG 2 cut(s) 232, 509
BseRI GAGGAG 2 cut(s) 91, 533
BseXI GCAGC 3 cut(s) 202, 510, 730
Bsh1236I CGCG 1 cut(s) 212
BshFI GGCC 2 cut(s) 59, 206
BshNI GGYRCC 1 cut(s) 117
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 1 cut(s) 330
BslFI GGGAC 2 cut(s) 220, 347
BslI CCNNNNNNNGG 1 cut(s) 533
BsmFI GGGAC 2 cut(s) 220, 347
BsmI GAATGC 1 cut(s) 485
BsnI GGCC 2 cut(s) 59, 206
BsoBI CYCGRG 1 cut(s) 329
Bsp143I GATC 2 cut(s) 309, 625
Bsp19I CCATGG 2 cut(s) 8, 201
BspACI CCGC 7 cut(s) 174, 190, 210, 212, 226, 572, 637
BspANI GGCC 2 cut(s) 59, 206
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 119
BspT107I GGYRCC 1 cut(s) 117
BsrI ACTGG 2 cut(s) 232, 509
BssECI CCNNGG 7 cut(s) 8, 54, 201, 210, 329, 330, 484
BssMI GATC 2 cut(s) 309, 625
BssT1I CCWWGG 3 cut(s) 8, 201, 484
Bst2UI CCWGG 2 cut(s) 56, 534
Bst4CI ACNGT 1 cut(s) 359
BstBAI YACGTR 1 cut(s) 432
BstC8I GCNNGC 2 cut(s) 94, 547
BstDEI CTNAG 1 cut(s) 707
BstDSI CCRYGG 3 cut(s) 8, 201, 210
BstF5I GGATG 3 cut(s) 239, 355, 666
BstFNI CGCG 1 cut(s) 212
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 2 cut(s) 225, 545
BstKTI GATC 2 cut(s) 312, 628
BstMBI GATC 2 cut(s) 309, 625
BstMWI GCNNNNNNNGC 3 cut(s) 10, 212, 529
BstNI CCWGG 2 cut(s) 56, 534
BstSCI CCNGG 4 cut(s) 54, 328, 329, 532
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 3 cut(s) 202, 510, 730
BstV2I GAAGAC 1 cut(s) 280
BstXI CCANNNNNNTGG 1 cut(s) 55
BsuRI GGCC 2 cut(s) 59, 206
BtgI CCRYGG 3 cut(s) 8, 201, 210
BtsCI GGATG 3 cut(s) 239, 355, 666
Cac8I GCNNGC 2 cut(s) 94, 547
CfoI GCGC 2 cut(s) 225, 545
Cfr42I CCGCGG 1 cut(s) 213
Cfr9I CCCGGG 1 cut(s) 329
CseI GACGC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 669
CviAII CATG 4 cut(s) 9, 84, 202, 629
CviJI RGCY 8 cut(s) 59, 163, 206, 215, 340, 523, 537, 549
CviKI_1 RGCY 8 cut(s) 59, 163, 206, 215, 340, 523, 537, 549
CviQI GTAC 1 cut(s) 669
DdeI CTNAG 1 cut(s) 707
DpnI GATC 2 cut(s) 311, 627
DpnII GATC 2 cut(s) 309, 625
DrdI GACNNNNNNGTC 1 cut(s) 341
DseDI GACNNNNNNGTC 1 cut(s) 341
EaeI YGGCCR 1 cut(s) 57
EciI GGCGGA 2 cut(s) 587, 652
Eco130I CCWWGG 3 cut(s) 8, 201, 484
Eco88I CYCGRG 1 cut(s) 329
EcoRII CCWGG 2 cut(s) 54, 532
EcoT14I CCWWGG 3 cut(s) 8, 201, 484
ErhI CCWWGG 3 cut(s) 8, 201, 484
FaeI CATG 4 cut(s) 12, 87, 205, 632
FaiI YATR 7 cut(s) 10, 85, 203, 399, 473, 630, 687
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FaqI GGGAC 2 cut(s) 220, 347
FatI CATG 4 cut(s) 8, 83, 201, 628
FbaI TGATCA 1 cut(s) 625
FblI GTMKAC 1 cut(s) 501
Fnu4HI GCNGC 6 cut(s) 174, 213, 216, 226, 524, 719
FokI GGATG 3 cut(s) 226, 362, 673
Fsp4HI GCNGC 6 cut(s) 174, 213, 216, 226, 524, 719
FspBI CTAG 1 cut(s) 341
GlaI GCGC 2 cut(s) 224, 544
GluI GCNGC 6 cut(s) 174, 213, 216, 226, 524, 719
GsuI CTGGAG 1 cut(s) 434
HaeII RGCGCY 1 cut(s) 226
HaeIII GGCC 2 cut(s) 59, 206
HapII CCGG 1 cut(s) 330
HgaI GACGC 1 cut(s) 61
HhaI GCGC 2 cut(s) 225, 545
Hin1II CATG 4 cut(s) 12, 87, 205, 632
Hin6I GCGC 2 cut(s) 223, 543
HinP1I GCGC 2 cut(s) 223, 543
HincII GTYRAC 2 cut(s) 283, 502
HindII GTYRAC 2 cut(s) 283, 502
HinfI GANTC 2 cut(s) 416, 599
HpaII CCGG 1 cut(s) 330
HphI GGTGA 2 cut(s) 26, 433
Hpy166II GTNNAC 3 cut(s) 283, 502, 591
Hpy188I TCNGA 2 cut(s) 106, 309
Hpy188III TCNNGA 2 cut(s) 41, 320
Hpy8I GTNNAC 3 cut(s) 283, 502, 591
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 2 cut(s) 153, 395
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4IV ACGT 4 cut(s) 111, 285, 303, 431
HpyCH4V TGCA 3 cut(s) 78, 129, 718
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 212, 529
HpyF3I CTNAG 1 cut(s) 707
HpySE526I ACGT 4 cut(s) 111, 285, 303, 431
Hsp92II CATG 4 cut(s) 12, 87, 205, 632
HspAI GCGC 2 cut(s) 223, 543
Ksp22I TGATCA 1 cut(s) 625
KspI CCGCGG 1 cut(s) 213
Kzo9I GATC 2 cut(s) 309, 625
LmnI GCTCC 1 cut(s) 520
Lsp1109I GCAGC 3 cut(s) 202, 510, 730
MaeI CTAG 1 cut(s) 341
MaeII ACGT 4 cut(s) 111, 285, 303, 431
MaeIII GTNAC 1 cut(s) 427
MalI GATC 2 cut(s) 311, 627
MboI GATC 2 cut(s) 309, 625
MboII GAAGA 3 cut(s) 265, 280, 502
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 3 cut(s) 129, 456, 564
MseI TTAA 2 cut(s) 468, 642
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 1 cut(s) 330
MspR9I CCNGG 4 cut(s) 56, 330, 331, 534
Mva1269I GAATGC 1 cut(s) 485
MvaI CCWGG 2 cut(s) 56, 534
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 3 cut(s) 10, 212, 529
NciI CCSGG 2 cut(s) 330, 331
NcoI CCATGG 2 cut(s) 8, 201
NdeII GATC 2 cut(s) 309, 625
NlaIII CATG 4 cut(s) 12, 87, 205, 632
NlaIV GGNNCC 1 cut(s) 119
PcsI WCGNNNNNNNCGW 4 cut(s) 282, 309, 342, 390
PctI GAATGC 1 cut(s) 485
PfeI GAWTC 1 cut(s) 599
PkrI GCNGC 6 cut(s) 175, 214, 217, 227, 525, 720
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
Ppu21I YACGTR 1 cut(s) 432
Psp1406I AACGTT 1 cut(s) 303
Psp6I CCWGG 2 cut(s) 54, 532
PspGI CCWGG 2 cut(s) 54, 532
PspN4I GGNNCC 1 cut(s) 119
RsaI GTAC 1 cut(s) 670
RsaNI GTAC 1 cut(s) 669
SacII CCGCGG 1 cut(s) 213
SalI GTCGAC 1 cut(s) 500
SaqAI TTAA 2 cut(s) 468, 642
SatI GCNGC 6 cut(s) 174, 213, 216, 226, 524, 719
Sau3AI GATC 2 cut(s) 309, 625
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 4 cut(s) 56, 330, 331, 534
Sfr303I CCGCGG 1 cut(s) 213
SgrBI CCGCGG 1 cut(s) 213
SmaI CCCGGG 1 cut(s) 331
SsiI CCGC 7 cut(s) 174, 190, 210, 212, 226, 572, 637
SspMI CTAG 1 cut(s) 341
StyD4I CCNGG 4 cut(s) 54, 328, 329, 532
StyI CCWWGG 3 cut(s) 8, 201, 484
TaaI ACNGT 1 cut(s) 359
TaiI ACGT 4 cut(s) 114, 288, 306, 434
TaqI TCGA 4 cut(s) 372, 384, 501, 555
TatI WGTACW 1 cut(s) 668
TauI GCSGC 3 cut(s) 176, 215, 228
TfiI GAWTC 1 cut(s) 599
Tru1I TTAA 2 cut(s) 468, 642
Tru9I TTAA 2 cut(s) 468, 642
TseI GCWGC 3 cut(s) 215, 523, 718
TspDTI ATGAA 1 cut(s) 414
TspMI CCCGGG 1 cut(s) 329
XmaI CCCGGG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 501
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.