Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010949

Physical Location & Seq

Genomic Coordinates Forward (+)

19123112 .. 19124060

Gene Structure 949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTCGATGATTCCTCCGCTTTCAAAAAGAAGCTCGACGACGAAGCTTCCATGGCAAGTGCTTGACCTTGTTTCTAATCATCTGGACCCTAAAACCCTAGCCACAGCCTGTTGCGTCTCCAAGACATGGTTCACTTGCATTTCCTCCGACCATATTTGGCAGCCCATTTGCACCACCCATTTCCCTTCTCTCTCTTGTAACCTCAAGCTCATCAACCCCGCCCTTCCCTACTACCGCCTCTATGCCATGGCCTCCACCGCCGCCAAACGCCGCTCCCGGACCCCCTCCAAACCCTCCCTCGCCCTCCACGACCTCATCCTCACCGTCAACGTCTTCAGCCACAACAAAGCTGTCTTCAGTCTTGAAAAACCCGGGGACGAGCTAGTCATGGATAATGGTGTTTTCAAGTTCGATATTGACGTCGATAACTATGAGGTTGAAGCTGCGGCGTCGGAGTCGGTGAGTGTTACGTGGAATGTGGTGTTGAAAGGGTGGAGAGGGGTATTTAATATGATGGAATCACGCAAAGGGAAGAGAGGGGTCGACGACTGGTGGTTCTCGGAGGAGCTGCCTTTGCCGGGGTGTTGCTCGAGCCTCGTCGACAGTGGTGTGGTGGCGGAGTTGAGGTTGGTGTTTACTGAAGAATCTAAAACGGGTGGAAACAATCTTGATCGTGTTGGGCGGATTAACAAAGTCAGCGTGGGGATGTTCAGCACAGCAAAGTTGAGATATGTCGGGGTCGATGATGGTTTCAGATACTTGCAACACTTCCTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

260

Amino Acids

28.98

Weight (kDa)

8.38

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	15 - 58	1.5e-06	F-box-like
F-box	PF00646	15 - 54	1.9e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03920 AT5G03930 AT5G04010
fragaria_vesca	FvH4_2g38461 FvH4_4g15460 FvH4_4g15570 FvH4_4g15602 FvH4_6g24810
malus_domestica	MD14G1081300.v1.1
prunus_persica	Prupe.7G049500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0484581
rosa_laevigata	RLG00000023218
rosa_multiflora	Rmu_sc0000295.1_g000040 Rmu_sc0016014.1_g000005
rosa_roxburghii	Rroxscaffold_6G00397620
rosa_rugosa	Rorug03G0211700
rosa_samantha	Rh3AG262600 Rh3BG297900 Rh3CG295000 Rh3DG291200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	383
AatII	GACGTC	1 cut(s)	423
AccB7I	CCANNNNNTGG	1 cut(s)	126
AccBSI	CCGCTC	1 cut(s)	273
AccI	GTMKAC	2 cut(s)	543, 600
AciI	CCGC	9 cut(s)	17, 219, 235, 258, 261, 271, 446, 617, 682
AcuI	CTGAAG	3 cut(s)	319, 340, 660
AcyI	GRCGYC	2 cut(s)	420, 449
AfiI	CCNNNNNNNGG	2 cut(s)	126, 578
AgsI	TTSAA	5 cut(s)	24, 365, 406, 440, 487
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	7 cut(s)	33, 46, 208, 350, 382, 443, 568
AluI	AGCT	7 cut(s)	33, 46, 208, 350, 382, 443, 568
Alw26I	GTCTC	1 cut(s)	121
Ama87I	CYCGRG	2 cut(s)	371, 589
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	3 cut(s)	160, 443, 568
AspS9I	GGNCC	2 cut(s)	85, 279
AsuC2I	CCSGG	4 cut(s)	277, 372, 373, 579
AsuHPI	GGTGA	2 cut(s)	313, 472
AvaI	CYCGRG	2 cut(s)	371, 589
AvaII	GGWCC	2 cut(s)	85, 279
BbsI	GAAGAC	2 cut(s)	325, 346
BbvI	GCAGC	3 cut(s)	172, 430, 555
BccI	CCATC	2 cut(s)	508, 740
BcnI	CCSGG	4 cut(s)	277, 372, 373, 579
BcoDI	GTCTC	1 cut(s)	121
BfaI	CTAG	2 cut(s)	98, 383
BisI	GCNGC	6 cut(s)	161, 261, 271, 444, 447, 569
BlsI	GCNGC	6 cut(s)	162, 262, 272, 445, 448, 570
Bme1390I	CCNGG	4 cut(s)	277, 372, 373, 579
Bme18I	GGWCC	2 cut(s)	85, 279
BmeT110I	CYCGRG	2 cut(s)	371, 589
BmgT120I	GGNCC	2 cut(s)	85, 279
BmiI	GGNNCC	2 cut(s)	87, 281
BmrFI	CCNGG	4 cut(s)	277, 372, 373, 579
BpiI	GAAGAC	2 cut(s)	325, 346
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	4 cut(s)	277, 372, 373, 579
BsaAI	YACGTR	1 cut(s)	471
BsaHI	GRCGYC	2 cut(s)	420, 449
BsaJI	CCNNGG	5 cut(s)	50, 246, 371, 372, 578
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 578
Bse1I	ACTGG	1 cut(s)	554
BseDI	CCNNGG	5 cut(s)	50, 246, 371, 372, 578
BseGI	GGATG	2 cut(s)	315, 711
BseLI	CCNNNNNNNGG	2 cut(s)	126, 578
BseNI	ACTGG	1 cut(s)	554
BseRI	GAGGAG	1 cut(s)	578
BseXI	GCAGC	3 cut(s)	172, 430, 555
BshFI	GGCC	1 cut(s)	251
BsiHKCI	CYCGRG	2 cut(s)	371, 589
BsiSI	CCGG	3 cut(s)	277, 372, 578
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	126, 578
BsmAI	GTCTC	1 cut(s)	121
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	1 cut(s)	251
BsoBI	CYCGRG	2 cut(s)	371, 589
Bsp143I	GATC	1 cut(s)	670
Bsp19I	CCATGG	2 cut(s)	50, 246
BspACI	CCGC	9 cut(s)	17, 219, 235, 258, 261, 271, 446, 617, 682
BspANI	GGCC	1 cut(s)	251
BspLI	GGNNCC	2 cut(s)	87, 281
BsrBI	CCGCTC	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	554
BssECI	CCNNGG	5 cut(s)	50, 246, 371, 372, 578
BssMI	GATC	1 cut(s)	670
BssNI	GRCGYC	2 cut(s)	420, 449
BssT1I	CCWWGG	2 cut(s)	50, 246
Bst4CI	ACNGT	2 cut(s)	325, 605
Bst6I	CTCTTC	1 cut(s)	527
BstACI	GRCGYC	2 cut(s)	420, 449
BstBAI	YACGTR	1 cut(s)	471
BstDSI	CCRYGG	2 cut(s)	50, 246
BstF5I	GGATG	2 cut(s)	315, 711
BstKTI	GATC	1 cut(s)	673
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	670
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 257, 574
BstSCI	CCNGG	4 cut(s)	275, 370, 371, 577
BstV1I	GCAGC	3 cut(s)	172, 430, 555
BstV2I	GAAGAC	2 cut(s)	325, 346
BsuRI	GGCC	1 cut(s)	251
BtgI	CCRYGG	2 cut(s)	50, 246
BtsCI	GGATG	2 cut(s)	315, 711
BtsIMutI	CAGTG	1 cut(s)	610
Cfr13I	GGNCC	2 cut(s)	85, 279
Cfr9I	CCCGGG	1 cut(s)	371
CseI	GACGC	2 cut(s)	103, 438
CviAII	CATG	4 cut(s)	51, 126, 247, 388
DpnI	GATC	1 cut(s)	672
DpnII	GATC	1 cut(s)	670
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
EciI	GGCGGA	2 cut(s)	632, 697
Eco130I	CCWWGG	2 cut(s)	50, 246
Eco47I	GGWCC	2 cut(s)	85, 279
Eco57I	CTGAAG	3 cut(s)	319, 340, 660
Eco88I	CYCGRG	2 cut(s)	371, 589
EcoT14I	CCWWGG	2 cut(s)	50, 246
ErhI	CCWWGG	2 cut(s)	50, 246
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	4 cut(s)	54, 129, 250, 391
FaiI	YATR	9 cut(s)	52, 127, 153, 243, 248, 389, 432, 512, 732
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	4 cut(s)	50, 125, 246, 387
FauI	CCCGC	1 cut(s)	226
FblI	GTMKAC	2 cut(s)	543, 600
Fnu4HI	GCNGC	6 cut(s)	161, 261, 271, 444, 447, 569
FokI	GGATG	2 cut(s)	302, 718
Fsp4HI	GCNGC	6 cut(s)	161, 261, 271, 444, 447, 569
FspBI	CTAG	2 cut(s)	98, 383
GluI	GCNGC	6 cut(s)	161, 261, 271, 444, 447, 569
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	3 cut(s)	277, 372, 578
HgaI	GACGC	2 cut(s)	103, 438
Hin1I	GRCGYC	2 cut(s)	420, 449
Hin1II	CATG	4 cut(s)	54, 129, 250, 391
HincII	GTYRAC	3 cut(s)	328, 544, 601
HindII	GTYRAC	3 cut(s)	328, 544, 601
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	4 cut(s)	10, 455, 518, 644
HpaII	CCGG	3 cut(s)	277, 372, 578
HphI	GGTGA	2 cut(s)	313, 472
Hpy166II	GTNNAC	5 cut(s)	132, 328, 544, 601, 636
Hpy188I	TCNGA	4 cut(s)	148, 454, 562, 755
Hpy188III	TCNNGA	3 cut(s)	83, 362, 668
Hpy8I	GTNNAC	5 cut(s)	132, 328, 544, 601, 636
Hpy99I	CGWCG	6 cut(s)	40, 43, 425, 454, 548, 602
HpyAV	CCTTC	2 cut(s)	195, 233
HpyCH4III	ACNGT	2 cut(s)	325, 605
HpyCH4IV	ACGT	3 cut(s)	330, 420, 470
HpyCH4V	TGCA	3 cut(s)	138, 171, 763
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 257, 574
HpySE526I	ACGT	3 cut(s)	330, 420, 470
Hsp92I	GRCGYC	2 cut(s)	420, 449
Hsp92II	CATG	4 cut(s)	54, 129, 250, 391
Kzo9I	GATC	1 cut(s)	670
LmnI	GCTCC	2 cut(s)	278, 565
LpnPI	CCDG	6 cut(s)	68, 121, 290, 385, 535, 591
Lsp1109I	GCAGC	3 cut(s)	172, 430, 555
MaeI	CTAG	2 cut(s)	98, 383
MaeII	ACGT	3 cut(s)	330, 420, 470
MaeIII	GTNAC	2 cut(s)	197, 466
MalI	GATC	1 cut(s)	672
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	1 cut(s)	670
MboII	GAAGA	4 cut(s)	325, 346, 544, 653
MlyI	GAGTC	1 cut(s)	464
MmeI	TCCRAC	2 cut(s)	171, 432
MseI	TTAA	2 cut(s)	507, 687
MspI	CCGG	3 cut(s)	277, 372, 578
MspR9I	CCNGG	4 cut(s)	277, 372, 373, 579
MwoI	GCNNNNNNNGC	3 cut(s)	52, 257, 574
NciI	CCSGG	4 cut(s)	277, 372, 373, 579
NcoI	CCATGG	2 cut(s)	50, 246
NdeII	GATC	1 cut(s)	670
NlaIII	CATG	4 cut(s)	54, 129, 250, 391
NlaIV	GGNNCC	2 cut(s)	87, 281
PaeR7I	CTCGAG	1 cut(s)	589
PcsI	WCGNNNNNNNCGW	2 cut(s)	306, 417
PfeI	GAWTC	3 cut(s)	10, 518, 644
PflMI	CCANNNNNTGG	1 cut(s)	126
PfoI	TCCNGGA	1 cut(s)	275
PkrI	GCNGC	6 cut(s)	162, 262, 272, 445, 448, 570
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
Ppu21I	YACGTR	1 cut(s)	471
PspN4I	GGNNCC	2 cut(s)	87, 281
PspPI	GGNCC	2 cut(s)	85, 279
PspXI	VCTCGAGB	1 cut(s)	589
SalI	GTCGAC	2 cut(s)	542, 599
SaqAI	TTAA	2 cut(s)	507, 687
SatI	GCNGC	6 cut(s)	161, 261, 271, 444, 447, 569
Sau3AI	GATC	1 cut(s)	670
Sau96I	GGNCC	2 cut(s)	85, 279
SchI	GAGTC	1 cut(s)	464
ScrFI	CCNGG	4 cut(s)	277, 372, 373, 579
Sfr274I	CTCGAG	1 cut(s)	589
SinI	GGWCC	2 cut(s)	85, 279
SlaI	CTCGAG	1 cut(s)	589
SmaI	CCCGGG	1 cut(s)	373
SmlI	CTYRAG	2 cut(s)	203, 589
SmoI	CTYRAG	2 cut(s)	203, 589
SsiI	CCGC	9 cut(s)	17, 219, 235, 258, 261, 271, 446, 617, 682
SspMI	CTAG	2 cut(s)	98, 383
StyD4I	CCNGG	4 cut(s)	275, 370, 371, 577
StyI	CCWWGG	2 cut(s)	50, 246
TaaI	ACNGT	2 cut(s)	325, 605
TaiI	ACGT	3 cut(s)	333, 423, 473
TaqI	TCGA	8 cut(s)	5, 35, 411, 423, 543, 590, 600, 741
TauI	GCSGC	3 cut(s)	263, 273, 449
TfiI	GAWTC	3 cut(s)	10, 518, 644
Tru1I	TTAA	2 cut(s)	507, 687
Tru9I	TTAA	2 cut(s)	507, 687
TscAI	CASTG	1 cut(s)	610
TseI	GCWGC	3 cut(s)	160, 443, 568
TspMI	CCCGGG	1 cut(s)	371
TspRI	CASTG	1 cut(s)	610
Van91I	CCANNNNNTGG	1 cut(s)	126
VpaK11BI	GGWCC	2 cut(s)	85, 279
XhoI	CTCGAG	1 cut(s)	589
XmaI	CCCGGG	1 cut(s)	371
XmiI	GTMKAC	2 cut(s)	543, 600
XspI	CTAG	2 cut(s)	98, 383
ZraI	GACGTC	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.