FvH4_4g15570

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0010949
Physical Location & Seq
Reverse (-)
19301318 .. 19302195
878 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15570.t1

Sequence Viewer

Length: 579 bp
ATGTCGATGATGCCTCCTCTTTCAAAAAGAAGCTGGATGTCGAAGCTTCCATGGCAAGTCCTTGACCTTGTTTCTAACCATCTCGACCCTAAAACCCTAGCCACAGCCTGTTGCATCTCCAAGACATGGTTCACTTGCATTTCCTCCGACCATATTTGGCAGCCCATTTGCACCACCCATTTCCCTTCTCTCTCTTATAACCTCAAGCTCATCAACCCCGCCCTTCCCTACTACCGCCTCTATGCCATGGCCTCAGCCGTCGCCAAACGCCGCTCCCGGACCCCCTCCAAGCCCTCCCTCACCCTCCACGACCTCATCTTCACCATCAACATCTTCAGCCACAACAAAGTTCTCTTCAGTCTTGAAAAACCCGGGGACGAGCTAGTCATGGATAATAATGGTGTTTTCAAGTTCGATATTGATGTCGATAACAACGAGCTTGAAGCTGTGGCGTCGGAGTCGGTGAGTGTTACGTGGAATGTGGTGTTGAAAGGGTGGAGAGGGGTATTTAATATGATGGAATCATGCAAAGGGAAGAGAGGGGTCGACGACTGTTGGTTCTCGGAGGAGCTGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

193

Amino Acids

21.88

Weight (kDa)

7.62

Isoelectric Point (pI)

54.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 14 - 54 5.6e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 198
AasI GACNNNNNNGTC 1 cut(s) 383
AccB7I CCANNNNNTGG 1 cut(s) 126
AccBSI CCGCTC 1 cut(s) 273
AccI GTMKAC 1 cut(s) 546
AciI CCGC 3 cut(s) 219, 235, 271
AcuI CTGAAG 2 cut(s) 319, 340
AcyI GRCGYC 1 cut(s) 452
AfiI CCNNNNNNNGG 1 cut(s) 126
AgsI TTSAA 5 cut(s) 24, 365, 409, 443, 490
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 7 cut(s) 33, 46, 208, 382, 439, 446, 571
AluI AGCT 7 cut(s) 33, 46, 208, 382, 439, 446, 571
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 1 cut(s) 249
ApeKI GCWGC 2 cut(s) 160, 571
AspS9I GGNCC 1 cut(s) 279
AsuC2I CCSGG 3 cut(s) 277, 372, 373
AsuHPI GGTGA 3 cut(s) 292, 313, 475
AvaI CYCGRG 1 cut(s) 371
AvaII GGWCC 1 cut(s) 279
BbvCI CCTCAGC 1 cut(s) 253
BbvI GCAGC 2 cut(s) 172, 558
BccI CCATC 3 cut(s) 87, 332, 511
BceAI ACGGC 1 cut(s) 242
BcnI CCSGG 3 cut(s) 277, 372, 373
BfaI CTAG 2 cut(s) 98, 383
BisI GCNGC 3 cut(s) 161, 271, 572
BlsI GCNGC 3 cut(s) 162, 272, 573
Bme1390I CCNGG 3 cut(s) 277, 372, 373
Bme18I GGWCC 1 cut(s) 279
BmeT110I CYCGRG 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 1 cut(s) 281
BmrFI CCNGG 3 cut(s) 277, 372, 373
BmsI GCATC 1 cut(s) 123
Bpu10I CCTNAGC 1 cut(s) 253
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 3 cut(s) 277, 372, 373
BsaAI YACGTR 1 cut(s) 474
BsaHI GRCGYC 1 cut(s) 452
BsaJI CCNNGG 4 cut(s) 50, 246, 371, 372
Bsc4I CCNNNNNNNGG 1 cut(s) 126
BseDI CCNNGG 4 cut(s) 50, 246, 371, 372
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 267
BseRI GAGGAG 1 cut(s) 6
BseXI GCAGC 2 cut(s) 172, 558
BshFI GGCC 1 cut(s) 251
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 2 cut(s) 277, 372
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 389
BsnI GGCC 1 cut(s) 251
BsoBI CYCGRG 1 cut(s) 371
Bsp19I CCATGG 2 cut(s) 50, 246
BspACI CCGC 3 cut(s) 219, 235, 271
BspANI GGCC 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 281
BsrBI CCGCTC 1 cut(s) 273
BssECI CCNNGG 4 cut(s) 50, 246, 371, 372
BssNI GRCGYC 1 cut(s) 452
BssT1I CCWWGG 2 cut(s) 50, 246
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 2 cut(s) 359, 530
BstACI GRCGYC 1 cut(s) 452
BstBAI YACGTR 1 cut(s) 474
BstDEI CTNAG 2 cut(s) 253, 576
BstDSI CCRYGG 2 cut(s) 50, 246
BstF5I GGATG 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstSCI CCNGG 3 cut(s) 275, 370, 371
BstV1I GCAGC 2 cut(s) 172, 558
BsuRI GGCC 1 cut(s) 251
BtgI CCRYGG 2 cut(s) 50, 246
BtsCI GGATG 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 279
Cfr9I CCCGGG 1 cut(s) 371
CseI GACGC 1 cut(s) 441
CviAII CATG 5 cut(s) 51, 126, 247, 388, 525
DdeI CTNAG 2 cut(s) 253, 576
DrdI GACNNNNNNGTC 1 cut(s) 383
DseDI GACNNNNNNGTC 1 cut(s) 383
Eam1104I CTCTTC 2 cut(s) 359, 530
EarI CTCTTC 2 cut(s) 359, 530
Eco130I CCWWGG 2 cut(s) 50, 246
Eco47I GGWCC 1 cut(s) 279
Eco57I CTGAAG 2 cut(s) 319, 340
Eco88I CYCGRG 1 cut(s) 371
EcoT14I CCWWGG 2 cut(s) 50, 246
ErhI CCWWGG 2 cut(s) 50, 246
FaeI CATG 5 cut(s) 54, 129, 250, 391, 528
FaiI YATR 9 cut(s) 52, 127, 153, 198, 243, 248, 389, 515, 526
FaqI GGGAC 1 cut(s) 389
FatI CATG 5 cut(s) 50, 125, 246, 387, 524
FauI CCCGC 1 cut(s) 226
FblI GTMKAC 1 cut(s) 546
Fnu4HI GCNGC 3 cut(s) 161, 271, 572
FokI GGATG 1 cut(s) 49
Fsp4HI GCNGC 3 cut(s) 161, 271, 572
FspBI CTAG 2 cut(s) 98, 383
GluI GCNGC 3 cut(s) 161, 271, 572
HaeIII GGCC 1 cut(s) 251
HapII CCGG 2 cut(s) 277, 372
HgaI GACGC 1 cut(s) 441
Hin1I GRCGYC 1 cut(s) 452
Hin1II CATG 5 cut(s) 54, 129, 250, 391, 528
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 2 cut(s) 458, 521
HpaII CCGG 2 cut(s) 277, 372
HphI GGTGA 3 cut(s) 292, 313, 475
Hpy166II GTNNAC 2 cut(s) 132, 547
Hpy188I TCNGA 3 cut(s) 148, 457, 565
Hpy188III TCNNGA 2 cut(s) 83, 362
Hpy8I GTNNAC 2 cut(s) 132, 547
Hpy99I CGWCG 3 cut(s) 263, 457, 551
HpyAV CCTTC 2 cut(s) 195, 233
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 1 cut(s) 473
HpyCH4V TGCA 4 cut(s) 114, 138, 171, 528
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 2 cut(s) 253, 576
HpySE526I ACGT 1 cut(s) 473
Hsp92I GRCGYC 1 cut(s) 452
Hsp92II CATG 5 cut(s) 54, 129, 250, 391, 528
LmnI GCTCC 2 cut(s) 278, 568
LpnPI CCDG 4 cut(s) 19, 121, 290, 385
Lsp1109I GCAGC 2 cut(s) 172, 558
LweI GCATC 1 cut(s) 123
MaeI CTAG 2 cut(s) 98, 383
MaeII ACGT 1 cut(s) 473
MaeIII GTNAC 1 cut(s) 469
MbiI CCGCTC 1 cut(s) 273
MboII GAAGA 4 cut(s) 310, 325, 346, 547
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 2 cut(s) 171, 435
MseI TTAA 1 cut(s) 510
MspI CCGG 2 cut(s) 277, 372
MspR9I CCNGG 3 cut(s) 277, 372, 373
MwoI GCNNNNNNNGC 1 cut(s) 52
NciI CCSGG 3 cut(s) 277, 372, 373
NcoI CCATGG 2 cut(s) 50, 246
NlaIII CATG 5 cut(s) 54, 129, 250, 391, 528
NlaIV GGNNCC 1 cut(s) 281
PcsI WCGNNNNNNNCGW 1 cut(s) 432
PfeI GAWTC 1 cut(s) 521
PflMI CCANNNNNTGG 1 cut(s) 126
PfoI TCCNGGA 1 cut(s) 275
PkrI GCNGC 3 cut(s) 162, 272, 573
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
Ppu21I YACGTR 1 cut(s) 474
PsiI TTATAA 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 281
PspPI GGNCC 1 cut(s) 279
SalI GTCGAC 1 cut(s) 545
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 3 cut(s) 161, 271, 572
Sau96I GGNCC 1 cut(s) 279
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 3 cut(s) 277, 372, 373
SfaNI GCATC 1 cut(s) 123
SinI GGWCC 1 cut(s) 279
SmaI CCCGGG 1 cut(s) 373
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SsiI CCGC 3 cut(s) 219, 235, 271
SspMI CTAG 2 cut(s) 98, 383
StyD4I CCNGG 3 cut(s) 275, 370, 371
StyI CCWWGG 2 cut(s) 50, 246
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 1 cut(s) 476
TaqI TCGA 6 cut(s) 5, 41, 84, 414, 426, 546
TauI GCSGC 1 cut(s) 273
TfiI GAWTC 1 cut(s) 521
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TseI GCWGC 2 cut(s) 160, 571
TspMI CCCGGG 1 cut(s) 371
Van91I CCANNNNNTGG 1 cut(s) 126
VpaK11BI GGWCC 1 cut(s) 279
XmaI CCCGGG 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 546
XspI CTAG 2 cut(s) 98, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.