Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010949

Physical Location & Seq

Genomic Coordinates Reverse (-)

27819928 .. 27820589

Gene Structure 662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g38461.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCCTCCGCGGCTGCCAAGCGCCGCTTCCAGTCCCCATCCAAACCCTCCCTTGCCCTCCACAACCTCATCTTCACCGTCAACGTCTTCAACCACAACAACGTTCTGATCATAAGTCTTGAAAAACCCGGGGACGAGCTAGTCGTGGATGACAACGGTGTTTTCAAGTTCGATATTGATGTCGATAACTACGAGTATGAAGGTGTGGTGCTGGAGTCGGTGAGAGTTACGTGGAATGTGGTGTTGAAAGGGTGGAGAGGGGTTTTTAATATGGTGGAATGCCACGGGAAGAAAGGGGTCGACTGGTGGTTCTGGGAGGAGCTGCCTTTGCCTGGCTGTTGCGCCAGCCTCGTCGATAGTGGTGTCGTGGCGGATTTGAGGTTGGAGTTCACTGATGATTCCAAAAGGGGTCAAAACAATGTTGATCATGTTGGGCGGATTAACAAAGTGAGCGTGGGGATGTTGAGTTTAGGGTTTACAACAAAGTTGAGGTATGTCGGTGTAGATGATGGTCTAAGATACTTGCAGCACTTCCTTTCACTATGTATTTGCCACTTTTTTCAACTTGTAGAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

193

Amino Acids

21.71

Weight (kDa)

5.65

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03920 AT5G03930 AT5G04010
fragaria_vesca	FvH4_2g38461 FvH4_4g15460 FvH4_4g15570 FvH4_4g15602 FvH4_6g24810
malus_domestica	MD14G1081300.v1.1
prunus_persica	Prupe.7G049500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0484581
rosa_laevigata	RLG00000023218
rosa_multiflora	Rmu_sc0000295.1_g000040 Rmu_sc0016014.1_g000005
rosa_roxburghii	Rroxscaffold_6G00397620
rosa_rugosa	Rorug03G0211700
rosa_samantha	Rh3AG262600 Rh3BG297900 Rh3CG295000 Rh3DG291200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	1 cut(s)	11
AciI	CCGC	5 cut(s)	9, 11, 25, 371, 436
AclI	AACGTT	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	573
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	5 cut(s)	91, 122, 166, 247, 563
AjnI	CCWGG	1 cut(s)	331
AjuI	GAANNNNNNNTTGG	2 cut(s)	11, 43
AluBI	AGCT	2 cut(s)	139, 322
AluI	AGCT	2 cut(s)	139, 322
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	14, 322, 526
ApoI	RAATTY	1 cut(s)	573
AspLEI	GCGC	2 cut(s)	24, 344
AsuC2I	CCSGG	2 cut(s)	129, 130
AsuHPI	GGTGA	2 cut(s)	67, 232
AvaI	CYCGRG	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	79
BbvI	GCAGC	2 cut(s)	309, 538
BccI	CCATC	2 cut(s)	46, 503
BciT130I	CCWGG	1 cut(s)	333
BclI	TGATCA	2 cut(s)	108, 424
BcnI	CCSGG	2 cut(s)	129, 130
BfaI	CTAG	1 cut(s)	140
BfoI	RGCGCY	1 cut(s)	25
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	5 cut(s)	12, 15, 25, 323, 527
BlsI	GCNGC	5 cut(s)	13, 16, 26, 324, 528
Bme1390I	CCNGG	3 cut(s)	129, 130, 333
BmeT110I	CYCGRG	1 cut(s)	128
BmrFI	CCNGG	3 cut(s)	129, 130, 333
BpiI	GAAGAC	1 cut(s)	79
BpmI	CTGGAG	1 cut(s)	233
BpuMI	CCSGG	2 cut(s)	129, 130
BsaAI	YACGTR	1 cut(s)	231
BsaJI	CCNNGG	4 cut(s)	9, 128, 129, 283
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse1I	ACTGG	2 cut(s)	31, 308
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	4 cut(s)	9, 128, 129, 283
BseGI	GGATG	3 cut(s)	38, 154, 465
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseNI	ACTGG	2 cut(s)	31, 308
BseRI	GAGGAG	1 cut(s)	332
BseXI	GCAGC	2 cut(s)	309, 538
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	2 cut(s)	19, 146
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmFI	GGGAC	2 cut(s)	19, 146
BsmI	GAATGC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	128
Bsp143I	GATC	2 cut(s)	108, 424
BspACI	CCGC	5 cut(s)	9, 11, 25, 371, 436
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	11
BsrI	ACTGG	2 cut(s)	31, 308
BssECI	CCNNGG	4 cut(s)	9, 128, 129, 283
BssMI	GATC	2 cut(s)	108, 424
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	2 cut(s)	79, 158
BstBAI	YACGTR	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	346
BstDEI	CTNAG	1 cut(s)	515
BstDSI	CCRYGG	2 cut(s)	9, 283
BstF5I	GGATG	3 cut(s)	38, 154, 465
BstFNI	CGCG	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	2 cut(s)	24, 344
BstKTI	GATC	2 cut(s)	111, 427
BstMBI	GATC	2 cut(s)	108, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 328
BstNI	CCWGG	1 cut(s)	333
BstSCI	CCNGG	3 cut(s)	127, 128, 331
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	2 cut(s)	309, 538
BstV2I	GAAGAC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	2 cut(s)	9, 283
BtsCI	GGATG	3 cut(s)	38, 154, 465
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	1 cut(s)	346
CfoI	GCGC	2 cut(s)	24, 344
Cfr42I	CCGCGG	1 cut(s)	12
Cfr9I	CCCGGG	1 cut(s)	128
CviAII	CATG	1 cut(s)	428
CviJI	RGCY	6 cut(s)	5, 14, 139, 322, 336, 348
CviKI_1	RGCY	6 cut(s)	5, 14, 139, 322, 336, 348
DdeI	CTNAG	1 cut(s)	515
DpnI	GATC	2 cut(s)	110, 426
DpnII	GATC	2 cut(s)	108, 424
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
EciI	GGCGGA	2 cut(s)	386, 451
Eco88I	CYCGRG	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	331
FaeI	CATG	1 cut(s)	431
FaiI	YATR	6 cut(s)	113, 198, 272, 429, 495, 544
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	2 cut(s)	19, 146
FatI	CATG	1 cut(s)	427
FbaI	TGATCA	2 cut(s)	108, 424
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	5 cut(s)	12, 15, 25, 323, 527
FokI	GGATG	3 cut(s)	25, 161, 472
Fsp4HI	GCNGC	5 cut(s)	12, 15, 25, 323, 527
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	2 cut(s)	23, 343
GluI	GCNGC	5 cut(s)	12, 15, 25, 323, 527
GsuI	CTGGAG	1 cut(s)	233
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	129
HhaI	GCGC	2 cut(s)	24, 344
Hin1II	CATG	1 cut(s)	431
Hin6I	GCGC	2 cut(s)	22, 342
HinP1I	GCGC	2 cut(s)	22, 342
HincII	GTYRAC	2 cut(s)	82, 301
HindII	GTYRAC	2 cut(s)	82, 301
HinfI	GANTC	2 cut(s)	215, 398
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	2 cut(s)	67, 232
Hpy166II	GTNNAC	4 cut(s)	82, 301, 390, 477
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	4 cut(s)	82, 301, 390, 477
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	2 cut(s)	79, 158
HpyCH4IV	ACGT	3 cut(s)	84, 102, 230
HpyCH4V	TGCA	1 cut(s)	526
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 328
HpyF3I	CTNAG	1 cut(s)	515
HpySE526I	ACGT	3 cut(s)	84, 102, 230
Hsp92II	CATG	1 cut(s)	431
HspAI	GCGC	2 cut(s)	22, 342
Ksp22I	TGATCA	2 cut(s)	108, 424
KspI	CCGCGG	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	108, 424
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	8 cut(s)	44, 142, 197, 289, 298, 318, 345, 358
Lsp1109I	GCAGC	2 cut(s)	309, 538
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	3 cut(s)	84, 102, 230
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	110, 426
MboI	GATC	2 cut(s)	108, 424
MboII	GAAGA	3 cut(s)	64, 79, 301
MluCI	AATT	1 cut(s)	573
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	9 cut(s)	16, 58, 68, 77, 251, 310, 359, 372, 483
MseI	TTAA	3 cut(s)	267, 441, 577
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	3 cut(s)	129, 130, 333
Mva1269I	GAATGC	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	333
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	11, 328
NciI	CCSGG	2 cut(s)	129, 130
NdeII	GATC	2 cut(s)	108, 424
NlaIII	CATG	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 189
PctI	GAATGC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	398
PkrI	GCNGC	5 cut(s)	13, 16, 26, 324, 528
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Ppu21I	YACGTR	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
SacII	CCGCGG	1 cut(s)	12
SalI	GTCGAC	1 cut(s)	299
SaqAI	TTAA	3 cut(s)	267, 441, 577
SatI	GCNGC	5 cut(s)	12, 15, 25, 323, 527
Sau3AI	GATC	2 cut(s)	108, 424
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	3 cut(s)	129, 130, 333
SetI	ASST	9 cut(s)	69, 87, 105, 141, 205, 233, 324, 383, 494
Sfr303I	CCGCGG	1 cut(s)	12
SgrBI	CCGCGG	1 cut(s)	12
SmaI	CCCGGG	1 cut(s)	130
Sse9I	AATT	1 cut(s)	573
SsiI	CCGC	5 cut(s)	9, 11, 25, 371, 436
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	3 cut(s)	127, 128, 331
TaaI	ACNGT	2 cut(s)	79, 158
TaiI	ACGT	3 cut(s)	87, 105, 233
TaqI	TCGA	4 cut(s)	171, 183, 300, 354
TasI	AATT	1 cut(s)	573
TauI	GCSGC	2 cut(s)	14, 27
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	3 cut(s)	267, 441, 577
Tru9I	TTAA	3 cut(s)	267, 441, 577
TscAI	CASTG	1 cut(s)	397
TseI	GCWGC	3 cut(s)	14, 322, 526
TspDTI	ATGAA	1 cut(s)	213
TspMI	CCCGGG	1 cut(s)	128
TspRI	CASTG	1 cut(s)	397
XapI	RAATTY	1 cut(s)	573
XmaI	CCCGGG	1 cut(s)	128
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.