Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000295.1

Orthogroup ID

OG0010949

Physical Location & Seq

Genomic Coordinates Reverse (-)

219787 .. 220494

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000295.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atggcttcatggcaagtctttgaccttgtttctcactttcttgaccccaaaaccctagccatagcctgttgcgtctgcaagtcctggttcagttgcatttcctccgaccacatttggaagcccatttgcaccacccattacccttctctctctaatctcaagctcaccattccctactatcgcctctacgccatggcctctgccgcagccaaacgccgcttccagaccccctccaaaccctgccttgccctcgacaacctcatcttcaccgtcaacgtcttcaaccacaagaacgttctctgtctcgaaaaaccagggaacgagctagtcatggattccaatggggtgttcaagttcgatattgccgtcgataactacgagtttgaagctgtggcgttggagtcggtgagagttacgtggaatgtggtgttgaaagggtggaaaggggtttttaatatgttggaatgtcaagggaagaaaggggtcgactggtggttctgggaggagctgcctttgccggggtgttgctcgggcctcgtcgatagcggtgtcgtggcggatttgaggttggagtttactgatagcaaaaacaatgttgatgttgggcggatcaacaaagtgagcatggggatgttgagtacggtaaacttgagatatgtcagtgtggatgctgctctaagatacttgcaacactttcttagatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

235

Amino Acids

26.7

Weight (kDa)

8.0

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03920 AT5G03930 AT5G04010
fragaria_vesca	FvH4_2g38461 FvH4_4g15460 FvH4_4g15570 FvH4_4g15602 FvH4_6g24810
malus_domestica	MD14G1081300.v1.1
prunus_persica	Prupe.7G049500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0484581
rosa_laevigata	RLG00000023218
rosa_multiflora	Rmu_sc0000295.1_g000040 Rmu_sc0016014.1_g000005
rosa_roxburghii	Rroxscaffold_6G00397620
rosa_rugosa	Rorug03G0211700
rosa_samantha	Rh3AG262600 Rh3BG297900 Rh3CG295000 Rh3DG291200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	486
AciI	CCGC	5 cut(s)	204, 217, 546, 557, 607
AclI	AACGTT	1 cut(s)	294
AclWI	GGATC	1 cut(s)	617
AfaI	GTAC	1 cut(s)	640
AfiI	CCNNNNNNNGG	1 cut(s)	518
AgsI	TTSAA	4 cut(s)	283, 352, 386, 433
AjnI	CCWGG	2 cut(s)	83, 313
AjuI	GAANNNNNNNTTGG	4 cut(s)	203, 235, 332, 364
AluBI	AGCT	4 cut(s)	163, 325, 389, 508
AluI	AGCT	4 cut(s)	163, 325, 389, 508
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	1 cut(s)	617
Ama87I	CYCGRG	1 cut(s)	529
AoxI	GGCC	2 cut(s)	195, 532
ApeKI	GCWGC	3 cut(s)	206, 508, 671
AspS9I	GGNCC	1 cut(s)	532
AsuC2I	CCSGG	1 cut(s)	519
AsuHPI	GGTGA	3 cut(s)	157, 259, 418
AvaI	CYCGRG	1 cut(s)	529
BbsI	GAAGAC	1 cut(s)	271
BbvI	GCAGC	3 cut(s)	218, 495, 658
BceAI	ACGGC	1 cut(s)	350
BciT130I	CCWGG	2 cut(s)	85, 315
BcnI	CCSGG	1 cut(s)	519
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	2 cut(s)	56, 326
BisI	GCNGC	5 cut(s)	204, 207, 217, 509, 672
BlsI	GCNGC	5 cut(s)	205, 208, 218, 510, 673
Bme1390I	CCNGG	3 cut(s)	85, 315, 519
BmeT110I	CYCGRG	1 cut(s)	529
BmgT120I	GGNCC	1 cut(s)	532
BmrFI	CCNGG	3 cut(s)	85, 315, 519
BmsI	GCATC	1 cut(s)	658
BpiI	GAAGAC	1 cut(s)	271
BpuEI	CTTGAG	2 cut(s)	143, 670
BpuMI	CCSGG	1 cut(s)	519
BsaAI	YACGTR	1 cut(s)	417
BsaJI	CCNNGG	3 cut(s)	192, 314, 518
Bsc4I	CCNNNNNNNGG	1 cut(s)	518
Bse1I	ACTGG	1 cut(s)	494
BseBI	CCWGG	2 cut(s)	85, 315
BseDI	CCNNGG	3 cut(s)	192, 314, 518
BseGI	GGATG	2 cut(s)	636, 673
BseLI	CCNNNNNNNGG	1 cut(s)	518
BseNI	ACTGG	1 cut(s)	494
BseRI	GAGGAG	1 cut(s)	518
BseXI	GCAGC	3 cut(s)	218, 495, 658
BshFI	GGCC	2 cut(s)	197, 534
BsiHKCI	CYCGRG	1 cut(s)	529
BsiSI	CCGG	1 cut(s)	518
BslI	CCNNNNNNNGG	1 cut(s)	518
BsmAI	GTCTC	1 cut(s)	308
BsnI	GGCC	2 cut(s)	197, 534
BsoBI	CYCGRG	1 cut(s)	529
Bsp143I	GATC	1 cut(s)	609
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	5 cut(s)	204, 217, 546, 557, 607
BspANI	GGCC	2 cut(s)	197, 534
BspPI	GGATC	1 cut(s)	617
BsrI	ACTGG	1 cut(s)	494
BssECI	CCNNGG	3 cut(s)	192, 314, 518
BssMI	GATC	1 cut(s)	609
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	85, 315
Bst4CI	ACNGT	2 cut(s)	271, 643
BstBAI	YACGTR	1 cut(s)	417
BstDEI	CTNAG	2 cut(s)	677, 698
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	2 cut(s)	636, 673
BstKTI	GATC	1 cut(s)	612
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	1 cut(s)	609
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 514
BstNI	CCWGG	2 cut(s)	85, 315
BstSCI	CCNGG	3 cut(s)	83, 313, 517
BstV1I	GCAGC	3 cut(s)	218, 495, 658
BstV2I	GAAGAC	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	197, 534
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	636, 673
BtsIMutI	CAGTG	1 cut(s)	667
Cfr13I	GGNCC	1 cut(s)	532
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	639
CviAII	CATG	4 cut(s)	9, 193, 331, 625
CviQI	GTAC	1 cut(s)	639
DdeI	CTNAG	2 cut(s)	677, 698
DpnI	GATC	1 cut(s)	611
DpnII	GATC	1 cut(s)	609
EciI	GGCGGA	2 cut(s)	572, 622
Eco130I	CCWWGG	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	529
EcoRII	CCWGG	2 cut(s)	83, 313
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	4 cut(s)	12, 196, 334, 628
FaiI	YATR	7 cut(s)	10, 62, 194, 332, 458, 626, 657
FatI	CATG	4 cut(s)	8, 192, 330, 624
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	5 cut(s)	204, 207, 217, 509, 672
FokI	GGATG	2 cut(s)	643, 680
Fsp4HI	GCNGC	5 cut(s)	204, 207, 217, 509, 672
FspBI	CTAG	2 cut(s)	56, 326
GluI	GCNGC	5 cut(s)	204, 207, 217, 509, 672
HaeIII	GGCC	2 cut(s)	197, 534
HapII	CCGG	1 cut(s)	518
HgaI	GACGC	1 cut(s)	61
Hin1II	CATG	4 cut(s)	12, 196, 334, 628
HincII	GTYRAC	2 cut(s)	274, 487
HindII	GTYRAC	2 cut(s)	274, 487
HinfI	GANTC	2 cut(s)	335, 401
HpaII	CCGG	1 cut(s)	518
HphI	GGTGA	3 cut(s)	157, 259, 418
Hpy166II	GTNNAC	4 cut(s)	274, 487, 576, 646
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	3 cut(s)	41, 223, 305
Hpy8I	GTNNAC	4 cut(s)	274, 487, 576, 646
Hpy99I	CGWCG	2 cut(s)	371, 542
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	2 cut(s)	271, 643
HpyCH4IV	ACGT	3 cut(s)	276, 294, 416
HpyCH4V	TGCA	4 cut(s)	78, 96, 129, 688
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 514
HpyF3I	CTNAG	2 cut(s)	677, 698
HpySE526I	ACGT	3 cut(s)	276, 294, 416
Hsp92II	CATG	4 cut(s)	12, 196, 334, 628
Kzo9I	GATC	1 cut(s)	609
LmnI	GCTCC	1 cut(s)	505
Lsp1109I	GCAGC	3 cut(s)	218, 495, 658
LweI	GCATC	1 cut(s)	658
MaeI	CTAG	2 cut(s)	56, 326
MaeII	ACGT	3 cut(s)	276, 294, 416
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	1 cut(s)	611
MboI	GATC	1 cut(s)	609
MboII	GAAGA	3 cut(s)	256, 271, 487
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	4 cut(s)	129, 378, 441, 549
MnlI	CCTC	9 cut(s)	112, 194, 208, 241, 260, 269, 496, 545, 558
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	1 cut(s)	629
MspI	CCGG	1 cut(s)	518
MspR9I	CCNGG	3 cut(s)	85, 315, 519
MvaI	CCWGG	2 cut(s)	85, 315
MwoI	GCNNNNNNNGC	2 cut(s)	203, 514
NciI	CCSGG	1 cut(s)	519
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	1 cut(s)	609
NlaIII	CATG	4 cut(s)	12, 196, 334, 628
PcsI	WCGNNNNNNNCGW	2 cut(s)	363, 375
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	5 cut(s)	205, 208, 218, 510, 673
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
Ppu21I	YACGTR	1 cut(s)	417
Psp1406I	AACGTT	1 cut(s)	294
Psp6I	CCWGG	2 cut(s)	83, 313
PspGI	CCWGG	2 cut(s)	83, 313
PspPI	GGNCC	1 cut(s)	532
RsaI	GTAC	1 cut(s)	640
RsaNI	GTAC	1 cut(s)	639
RseI	CAYNNNNRTG	1 cut(s)	629
SalI	GTCGAC	1 cut(s)	485
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	5 cut(s)	204, 207, 217, 509, 672
Sau3AI	GATC	1 cut(s)	609
Sau96I	GGNCC	1 cut(s)	532
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	3 cut(s)	85, 315, 519
SfaNI	GCATC	1 cut(s)	658
SmiMI	CAYNNNNRTG	1 cut(s)	629
SmlI	CTYRAG	2 cut(s)	158, 649
SmoI	CTYRAG	2 cut(s)	158, 649
SsiI	CCGC	5 cut(s)	204, 217, 546, 557, 607
SspMI	CTAG	2 cut(s)	56, 326
StyD4I	CCNGG	3 cut(s)	83, 313, 517
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	2 cut(s)	271, 643
TaiI	ACGT	3 cut(s)	279, 297, 419
TaqI	TCGA	6 cut(s)	252, 306, 357, 369, 486, 540
TauI	GCSGC	2 cut(s)	206, 219
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	1 cut(s)	667
TseI	GCWGC	3 cut(s)	206, 508, 671
TspRI	CASTG	1 cut(s)	667
XmiI	GTMKAC	1 cut(s)	486
XspI	CTAG	2 cut(s)	56, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.