RLG00000023218

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0010949
Physical Location & Seq
Forward (+)
20087034 .. 20087750
717 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023218

Sequence Viewer

Length: 717 bp
ATGGCTCAATGGCAAGTCTTTGACCTTGTTTCTCACCATCTTGACCCCAAGACCCTAGCCATAGCCTGTTGCGTCTGCAAGTCCTGGTTCAGTTGCATGTCCTCCGACCACATTTGGAAGCCCATTTGCACCACCCATTTCCCTTCTCTCTCTAATCTCAAGCTCACAAACCCCGCCATTCCCTACTACCGCCTCTACGCCATAGCCTCTGCCGCCGCCAAACGCCGCTTCCAGACCCCCTCCAAACCCTGCCTTGCCCTCGACAACCTCATCTTCACCGTCAACGTCTTCAACCACAAGAAGGTTCTCTGTCTCGAAAAACCCGGGAACGAGCTAGTCGTGGATTCCAATGGGGTGTTCAAGTTCGACGTTGCCGTCGATAACTACGAGTTTGAAGCTGTGGCGTTGGAGTCGGTGAGAGTTACGTGGAATGTGGTGTTGAAAGGGTGGAAAGGGGTTTTTAATATGTTGGAATGTCAAGGGAAGAAAGGGGTCGACTGGTGGTTCTGGGAGGAGCTGCCTTTGCCGGGGTGTTGCTCGGGCCTCGTGGATAGCGGTGTCGTGGCGGATTTGAGGTTGGAGTTTACTGATTGCAAAAACAATGTTGATTTTGGGCGGATCAACAAAGTGAGCGTGGGGATGTTGAGTACAGTAAACTTGAGATATGTTAGTGTGGATGCTGCTCTAAGATACTTGCAACACTTTCTTGGATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

239

Amino Acids

26.9

Weight (kDa)

7.97

Isoelectric Point (pI)

29.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 12 - 44 5.5e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 374
AccI GTMKAC 1 cut(s) 495
AciI CCGC 8 cut(s) 174, 190, 213, 216, 226, 555, 566, 616
AclWI GGATC 1 cut(s) 626
AfaI GTAC 1 cut(s) 649
AfiI CCNNNNNNNGG 2 cut(s) 301, 527
AgsI TTSAA 4 cut(s) 292, 361, 395, 442
AjnI CCWGG 1 cut(s) 83
AjuI GAANNNNNNNTTGG 4 cut(s) 212, 244, 341, 373
AluBI AGCT 4 cut(s) 163, 334, 398, 517
AluI AGCT 4 cut(s) 163, 334, 398, 517
Alw26I GTCTC 1 cut(s) 317
AlwI GGATC 1 cut(s) 626
Ama87I CYCGRG 2 cut(s) 323, 538
AoxI GGCC 1 cut(s) 541
ApeKI GCWGC 2 cut(s) 517, 680
AspS9I GGNCC 1 cut(s) 541
AsuC2I CCSGG 3 cut(s) 324, 325, 528
AsuHPI GGTGA 3 cut(s) 26, 268, 427
AvaI CYCGRG 2 cut(s) 323, 538
BauI CACGAG 1 cut(s) 545
BbsI GAAGAC 1 cut(s) 280
BbvI GCAGC 2 cut(s) 504, 667
BccI CCATC 1 cut(s) 45
BceAI ACGGC 1 cut(s) 359
BciT130I CCWGG 1 cut(s) 85
BcnI CCSGG 3 cut(s) 324, 325, 528
BcoDI GTCTC 1 cut(s) 317
BfaI CTAG 2 cut(s) 56, 335
BisI GCNGC 5 cut(s) 213, 216, 226, 518, 681
BlsI GCNGC 5 cut(s) 214, 217, 227, 519, 682
Bme1390I CCNGG 4 cut(s) 85, 324, 325, 528
BmeT110I CYCGRG 2 cut(s) 323, 538
BmgT120I GGNCC 1 cut(s) 541
BmrFI CCNGG 4 cut(s) 85, 324, 325, 528
BmsI GCATC 1 cut(s) 667
BpiI GAAGAC 1 cut(s) 280
BpuEI CTTGAG 2 cut(s) 143, 679
BpuMI CCSGG 3 cut(s) 324, 325, 528
BsaAI YACGTR 1 cut(s) 426
BsaJI CCNNGG 2 cut(s) 323, 527
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 527
Bse1I ACTGG 1 cut(s) 503
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 2 cut(s) 323, 527
BseGI GGATG 2 cut(s) 645, 682
BseLI CCNNNNNNNGG 2 cut(s) 301, 527
BseNI ACTGG 1 cut(s) 503
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 2 cut(s) 504, 667
BshFI GGCC 1 cut(s) 543
BsiHKCI CYCGRG 2 cut(s) 323, 538
BsiSI CCGG 2 cut(s) 324, 527
BslI CCNNNNNNNGG 2 cut(s) 301, 527
BsmAI GTCTC 1 cut(s) 317
BsnI GGCC 1 cut(s) 543
BsoBI CYCGRG 2 cut(s) 323, 538
Bsp143I GATC 1 cut(s) 618
BspACI CCGC 8 cut(s) 174, 190, 213, 216, 226, 555, 566, 616
BspANI GGCC 1 cut(s) 543
BspPI GGATC 1 cut(s) 626
BsrI ACTGG 1 cut(s) 503
BssECI CCNNGG 2 cut(s) 323, 527
BssMI GATC 1 cut(s) 618
BssSI CACGAG 1 cut(s) 545
Bst2BI CACGAG 1 cut(s) 545
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 2 cut(s) 280, 652
BstBAI YACGTR 1 cut(s) 426
BstDEI CTNAG 1 cut(s) 686
BstF5I GGATG 2 cut(s) 645, 682
BstKTI GATC 1 cut(s) 621
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 1 cut(s) 618
BstMWI GCNNNNNNNGC 2 cut(s) 212, 523
BstNI CCWGG 1 cut(s) 85
BstNSI RCATGY 1 cut(s) 100
BstSCI CCNGG 4 cut(s) 83, 322, 323, 526
BstV1I GCAGC 2 cut(s) 504, 667
BstV2I GAAGAC 1 cut(s) 280
BsuRI GGCC 1 cut(s) 543
BtsCI GGATG 2 cut(s) 645, 682
Cfr13I GGNCC 1 cut(s) 541
Cfr9I CCCGGG 1 cut(s) 323
CseI GACGC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 648
CviAII CATG 1 cut(s) 97
CviQI GTAC 1 cut(s) 648
DdeI CTNAG 1 cut(s) 686
DpnI GATC 1 cut(s) 620
DpnII GATC 1 cut(s) 618
DrdI GACNNNNNNGTC 1 cut(s) 374
DseDI GACNNNNNNGTC 1 cut(s) 374
EciI GGCGGA 2 cut(s) 581, 631
Eco88I CYCGRG 2 cut(s) 323, 538
EcoRII CCWGG 1 cut(s) 83
FaeI CATG 1 cut(s) 100
FaiI YATR 5 cut(s) 62, 98, 203, 467, 666
FatI CATG 1 cut(s) 96
FauI CCCGC 1 cut(s) 181
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 5 cut(s) 213, 216, 226, 518, 681
FokI GGATG 2 cut(s) 652, 689
Fsp4HI GCNGC 5 cut(s) 213, 216, 226, 518, 681
FspBI CTAG 2 cut(s) 56, 335
GluI GCNGC 5 cut(s) 213, 216, 226, 518, 681
HaeIII GGCC 1 cut(s) 543
HapII CCGG 2 cut(s) 324, 527
HgaI GACGC 1 cut(s) 61
Hin1II CATG 1 cut(s) 100
HincII GTYRAC 2 cut(s) 283, 496
HindII GTYRAC 2 cut(s) 283, 496
HinfI GANTC 2 cut(s) 344, 410
HpaII CCGG 2 cut(s) 324, 527
HphI GGTGA 3 cut(s) 26, 268, 427
Hpy166II GTNNAC 4 cut(s) 283, 496, 585, 655
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 3 cut(s) 41, 232, 314
Hpy8I GTNNAC 4 cut(s) 283, 496, 585, 655
Hpy99I CGWCG 2 cut(s) 371, 380
HpyAV CCTTC 2 cut(s) 153, 295
HpyCH4III ACNGT 2 cut(s) 280, 652
HpyCH4IV ACGT 3 cut(s) 285, 369, 425
HpyCH4V TGCA 5 cut(s) 78, 96, 129, 594, 697
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 523
HpyF3I CTNAG 1 cut(s) 686
HpySE526I ACGT 3 cut(s) 285, 369, 425
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 1 cut(s) 618
LmnI GCTCC 1 cut(s) 514
LpnPI CCDG 9 cut(s) 70, 79, 97, 245, 262, 337, 484, 493, 540
Lsp1109I GCAGC 2 cut(s) 504, 667
LweI GCATC 1 cut(s) 667
MaeI CTAG 2 cut(s) 56, 335
MaeII ACGT 3 cut(s) 285, 369, 425
MaeIII GTNAC 1 cut(s) 421
MalI GATC 1 cut(s) 620
MboI GATC 1 cut(s) 618
MboII GAAGA 3 cut(s) 265, 280, 496
MlyI GAGTC 1 cut(s) 419
MmeI TCCRAC 4 cut(s) 129, 387, 450, 558
MnlI CCTC 9 cut(s) 112, 203, 217, 250, 269, 278, 505, 554, 567
MseI TTAA 1 cut(s) 462
MspI CCGG 2 cut(s) 324, 527
MspR9I CCNGG 4 cut(s) 85, 324, 325, 528
MvaI CCWGG 1 cut(s) 85
MwoI GCNNNNNNNGC 2 cut(s) 212, 523
NciI CCSGG 3 cut(s) 324, 325, 528
NdeII GATC 1 cut(s) 618
NlaIII CATG 1 cut(s) 100
NspI RCATGY 1 cut(s) 100
PcsI WCGNNNNNNNCGW 4 cut(s) 336, 372, 375, 384
PfeI GAWTC 1 cut(s) 344
PkrI GCNGC 5 cut(s) 214, 217, 227, 519, 682
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
Ppu21I YACGTR 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspPI GGNCC 1 cut(s) 541
RsaI GTAC 1 cut(s) 649
RsaNI GTAC 1 cut(s) 648
SalI GTCGAC 1 cut(s) 494
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 5 cut(s) 213, 216, 226, 518, 681
Sau3AI GATC 1 cut(s) 618
Sau96I GGNCC 1 cut(s) 541
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 4 cut(s) 85, 324, 325, 528
SfaNI GCATC 1 cut(s) 667
SmaI CCCGGG 1 cut(s) 325
SmlI CTYRAG 2 cut(s) 158, 658
SmoI CTYRAG 2 cut(s) 158, 658
SsiI CCGC 8 cut(s) 174, 190, 213, 216, 226, 555, 566, 616
SspMI CTAG 2 cut(s) 56, 335
StyD4I CCNGG 4 cut(s) 83, 322, 323, 526
TaaI ACNGT 2 cut(s) 280, 652
TaiI ACGT 3 cut(s) 288, 372, 428
TaqI TCGA 5 cut(s) 261, 315, 366, 378, 495
TatI WGTACW 1 cut(s) 647
TauI GCSGC 3 cut(s) 215, 218, 228
TfiI GAWTC 1 cut(s) 344
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TseI GCWGC 2 cut(s) 517, 680
TspMI CCCGGG 1 cut(s) 323
XceI RCATGY 1 cut(s) 100
XmaI CCCGGG 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 495
XspI CTAG 2 cut(s) 56, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.