Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010949

Physical Location & Seq

Genomic Coordinates Reverse (-)

19405564 .. 19406047

Gene Structure 484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15602.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCCTCCGACGCCGCCAAACGCCGCTCACAGACCCCCTCCAAACCCTCCCTCACCCTCCACGACCTCATCTTCACCGTCAACGTCTTCAGCCACAACAAAGTTCTCTTCAGTCTTGAAAAACCCGGGGACGAGCTAGTCGTGGATGGCAATGGTGTTTTCAAGTTCGATATTGACGTCGATAACTACGAACTTGAAGCTGTGGCGTCGGAGTTGGGCGGAGAGGGGGTATTTAATATGATGGAATCATGCAAAGGGAAGAGAGGTGTCGACGACTGGTGGTTCTCGGAGGAGCTGCCTTTGCCGGGGTGTTTCTCGAGCCTCGTCGATAGTGGTGTGGTGGCGGAGTTGAGGTTGGTGTTGACTGATGAATCCACAATGGGTGGAAACAACGTTGATCATGTTGCGCGGATTAACAAAGTCAGCGTGGGGATGTTCAATACAGCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

151

Amino Acids

16.36

Weight (kDa)

4.61

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03920 AT5G03930 AT5G04010
fragaria_vesca	FvH4_2g38461 FvH4_4g15460 FvH4_4g15570 FvH4_4g15602 FvH4_6g24810
malus_domestica	MD14G1081300.v1.1
prunus_persica	Prupe.7G049500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0484581
rosa_laevigata	RLG00000023218
rosa_multiflora	Rmu_sc0000295.1_g000040 Rmu_sc0016014.1_g000005
rosa_roxburghii	Rroxscaffold_6G00397620
rosa_rugosa	Rorug03G0211700
rosa_samantha	Rh3AG262600 Rh3BG297900 Rh3CG295000 Rh3DG291200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AatII	GACGTC	1 cut(s)	180
AccBSI	CCGCTC	1 cut(s)	27
AccI	GTMKAC	1 cut(s)	270
AccII	CGCG	1 cut(s)	409
AciI	CCGC	5 cut(s)	15, 25, 219, 344, 409
AclI	AACGTT	1 cut(s)	393
AcuI	CTGAAG	2 cut(s)	73, 94
AcyI	GRCGYC	3 cut(s)	12, 177, 206
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	4 cut(s)	119, 163, 197, 439
AluBI	AGCT	3 cut(s)	136, 200, 295
AluI	AGCT	3 cut(s)	136, 200, 295
Ama87I	CYCGRG	2 cut(s)	125, 316
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	295
AspLEI	GCGC	1 cut(s)	409
AsuC2I	CCSGG	3 cut(s)	126, 127, 306
AsuHPI	GGTGA	2 cut(s)	46, 67
AvaI	CYCGRG	2 cut(s)	125, 316
BbsI	GAAGAC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	2 cut(s)	140, 235
BclI	TGATCA	1 cut(s)	397
BcnI	CCSGG	3 cut(s)	126, 127, 306
BfaI	CTAG	1 cut(s)	137
BisI	GCNGC	3 cut(s)	15, 25, 296
BlsI	GCNGC	3 cut(s)	16, 26, 297
Bme1390I	CCNGG	3 cut(s)	126, 127, 306
BmeT110I	CYCGRG	2 cut(s)	125, 316
BmrFI	CCNGG	3 cut(s)	126, 127, 306
BpiI	GAAGAC	1 cut(s)	79
BpuMI	CCSGG	3 cut(s)	126, 127, 306
BsaHI	GRCGYC	3 cut(s)	12, 177, 206
BsaJI	CCNNGG	3 cut(s)	125, 126, 305
BsaXI	ACNNNNNCTCC	4 cut(s)	213, 243, 338, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	157
BseDI	CCNNGG	3 cut(s)	125, 126, 305
BseGI	GGATG	2 cut(s)	151, 438
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMI	GCAATG	1 cut(s)	157
BseNI	ACTGG	1 cut(s)	281
BseRI	GAGGAG	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	409
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	2 cut(s)	125, 316
BsiSI	CCGG	2 cut(s)	126, 305
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	2 cut(s)	125, 316
Bsp143I	GATC	1 cut(s)	397
BspACI	CCGC	5 cut(s)	15, 25, 219, 344, 409
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	409
BsrBI	CCGCTC	1 cut(s)	27
BsrDI	GCAATG	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	281
BssECI	CCNNGG	3 cut(s)	125, 126, 305
BssMI	GATC	1 cut(s)	397
BssNI	GRCGYC	3 cut(s)	12, 177, 206
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	2 cut(s)	113, 254
BstACI	GRCGYC	3 cut(s)	12, 177, 206
BstF5I	GGATG	2 cut(s)	151, 438
BstFNI	CGCG	1 cut(s)	409
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	1 cut(s)	400
BstMBI	GATC	1 cut(s)	397
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 301
BstSCI	CCNGG	3 cut(s)	124, 125, 304
BstUI	CGCG	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	282
BstV2I	GAAGAC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	151, 438
CfoI	GCGC	1 cut(s)	409
Cfr9I	CCCGGG	1 cut(s)	125
CseI	GACGC	2 cut(s)	20, 195
CviAII	CATG	2 cut(s)	249, 401
CviJI	RGCY	6 cut(s)	5, 93, 136, 200, 295, 321
CviKI_1	RGCY	6 cut(s)	5, 93, 136, 200, 295, 321
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
Eam1104I	CTCTTC	2 cut(s)	113, 254
EarI	CTCTTC	2 cut(s)	113, 254
EciI	GGCGGA	2 cut(s)	234, 359
Eco57I	CTGAAG	2 cut(s)	73, 94
Eco88I	CYCGRG	2 cut(s)	125, 316
FaeI	CATG	2 cut(s)	252, 404
FaiI	YATR	3 cut(s)	239, 250, 402
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	2 cut(s)	248, 400
FbaI	TGATCA	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	3 cut(s)	15, 25, 296
FokI	GGATG	2 cut(s)	158, 445
Fsp4HI	GCNGC	3 cut(s)	15, 25, 296
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	3 cut(s)	15, 25, 296
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	126, 305
HgaI	GACGC	2 cut(s)	20, 195
HhaI	GCGC	1 cut(s)	409
Hin1I	GRCGYC	3 cut(s)	12, 177, 206
Hin1II	CATG	2 cut(s)	252, 404
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HincII	GTYRAC	3 cut(s)	82, 271, 363
HindII	GTYRAC	3 cut(s)	82, 271, 363
HinfI	GANTC	2 cut(s)	245, 371
HpaII	CCGG	2 cut(s)	126, 305
HphI	GGTGA	2 cut(s)	46, 67
Hpy166II	GTNNAC	3 cut(s)	82, 271, 363
Hpy188I	TCNGA	3 cut(s)	10, 211, 289
Hpy188III	TCNNGA	2 cut(s)	116, 316
Hpy8I	GTNNAC	3 cut(s)	82, 271, 363
Hpy99I	CGWCG	5 cut(s)	14, 182, 211, 275, 329
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	3 cut(s)	84, 177, 393
HpyCH4V	TGCA	1 cut(s)	252
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 301
HpySE526I	ACGT	3 cut(s)	84, 177, 393
Hsp92I	GRCGYC	3 cut(s)	12, 177, 206
Hsp92II	CATG	2 cut(s)	252, 404
HspAI	GCGC	1 cut(s)	407
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	1 cut(s)	397
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	3 cut(s)	139, 262, 318
Lsp1109I	GCAGC	1 cut(s)	282
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	3 cut(s)	84, 177, 393
MalI	GATC	1 cut(s)	399
MbiI	CCGCTC	1 cut(s)	27
MboI	GATC	1 cut(s)	397
MboII	GAAGA	4 cut(s)	64, 79, 100, 271
MluCI	AATT	1 cut(s)	448
MmeI	TCCRAC	2 cut(s)	33, 189
MseI	TTAA	3 cut(s)	234, 414, 451
MspI	CCGG	2 cut(s)	126, 305
MspR9I	CCNGG	3 cut(s)	126, 127, 306
MvnI	CGCG	1 cut(s)	409
MwoI	GCNNNNNNNGC	2 cut(s)	11, 301
NciI	CCSGG	3 cut(s)	126, 127, 306
NdeII	GATC	1 cut(s)	397
NlaIII	CATG	2 cut(s)	252, 404
PaeR7I	CTCGAG	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	3 cut(s)	138, 174, 186
PfeI	GAWTC	2 cut(s)	245, 371
PkrI	GCNGC	3 cut(s)	16, 26, 297
Psp1406I	AACGTT	1 cut(s)	393
SalI	GTCGAC	1 cut(s)	269
SaqAI	TTAA	3 cut(s)	234, 414, 451
SatI	GCNGC	3 cut(s)	15, 25, 296
Sau3AI	GATC	1 cut(s)	397
ScrFI	CCNGG	3 cut(s)	126, 127, 306
SetI	ASST	9 cut(s)	69, 87, 138, 180, 202, 268, 297, 356, 396
Sfr274I	CTCGAG	1 cut(s)	316
SlaI	CTCGAG	1 cut(s)	316
SmaI	CCCGGG	1 cut(s)	127
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
Sse9I	AATT	1 cut(s)	448
SsiI	CCGC	5 cut(s)	15, 25, 219, 344, 409
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	3 cut(s)	124, 125, 304
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	3 cut(s)	87, 180, 396
TaqI	TCGA	5 cut(s)	168, 180, 270, 317, 327
TasI	AATT	1 cut(s)	448
TauI	GCSGC	2 cut(s)	17, 27
TfiI	GAWTC	2 cut(s)	245, 371
Tru1I	TTAA	3 cut(s)	234, 414, 451
Tru9I	TTAA	3 cut(s)	234, 414, 451
TseI	GCWGC	1 cut(s)	295
TspDTI	ATGAA	1 cut(s)	384
TspMI	CCCGGG	1 cut(s)	125
XhoI	CTCGAG	1 cut(s)	316
XmaI	CCCGGG	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	270
XspI	CTAG	1 cut(s)	137
ZraI	GACGTC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.