Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005069

Physical Location & Seq

Genomic Coordinates Forward (+)

1399395 .. 1400784

Gene Structure 1390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G04820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGGGAAGAAGAAGATGAAACTCTCTTCTCTGTTCAAAGGCGGAGCCGGAGGATTACTAGCGGTTCCTCTCTGTTACAATGCCAAAACTCTTTCGTTCCGAGTCGGCGACGACATGATCAAGACGGTGAACTCTGTTTTCTTCGACCACCACCACAACAACAACAATGGAGGAGATTTGTTGGAAGCGGAGACGCCTGAGTCATGGTTTACTAACTCGTCCGAGACAGCGAGTCACTCAACCGAGTCGGATCAAGACCTTGACGCTGAGTCCTTAGAGATGGTGGTTCGTGGCGTTGTTAGATCGGAGCGGTTATTCTTCGATCCAGGAGTTACGAGTTCGATTCTGGAAGAGATTGAAGAGAAATCGAAATCGGATTTGAAATCGAAGGAAACGGTTGCGGTGGGAGAAGATCGGAGTACGCCGATTGAGGAGATTAGTGTCGCGGTGGCGATGGAATCCGAGGATCCGTACGGTGATTTCCGGCGATCGATGGAGGAGATGGTGACGAGTCACGGTGAGTTGGCTAAAGATTGGGAGAGCTTGGAATCGATGCTCGCTTGGTATTTGAGGATGAATGGGAGGAAGAGTCACGGCGTTATCGTCAGTGCTTTTGTTGATCTTCTCTCTGGACTCTCTGATTCCGGCGCCGGAATAACGTCGGCTTCGGTATCGGATTCGGCTCGTTATTCAACCGCCGTTTCGTCTTTGCCGTCGTCGCCGGTTTATTCGTTATCTCAAGGTCAGACGGAGATTCAAGAGGAAGAGAGACGGAGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

260

Amino Acids

28.38

Weight (kDa)

4.72

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	154 - 212	1.1e-23	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04820
fragaria_vesca	FvH4_6g19870
malus_domestica	MD02G1258900.v1.1 MD07G1061800.v1.1 MD07G1061900.v1.1 MD12G1034200.v1.1 MD14G1035600.v1.1
prunus_persica	Prupe.2G071500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1
pyrus_communis	pycom07g04730 pycom12g03170 pycom14g03130
rosa_chinensis	RchiOBHm_Chr3g0475291
rosa_laevigata	RLG00000023854
rosa_multiflora	Rmu_ssc0000140.1_g000002
rosa_roxburghii	Rroxscaffold_6G00406410
rosa_rugosa	Rorug03G0147700
rosa_samantha	Rh3AG197700 Rh3BG228000 Rh3DG223200
rosa_wichuraiana	Rw3G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	199
AccB1I	GGYRCC	1 cut(s)	647
AccBSI	CCGCTC	1 cut(s)	310
AccII	CGCG	1 cut(s)	446
AciI	CCGC	7 cut(s)	42, 62, 188, 310, 401, 446, 696
AclWI	GGATC	4 cut(s)	258, 317, 461, 474
AcyI	GRCGYC	2 cut(s)	194, 648
AfaI	GTAC	2 cut(s)	421, 473
AgsI	TTSAA	5 cut(s)	37, 359, 382, 693, 758
AhdI	GACNNNNNGTC	2 cut(s)	231, 268
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	2 cut(s)	543, 777
AluI	AGCT	2 cut(s)	543, 777
Alw26I	GTCTC	3 cut(s)	185, 218, 763
AlwI	GGATC	4 cut(s)	258, 317, 461, 474
AspLEI	GCGC	1 cut(s)	650
AsuHPI	GGTGA	4 cut(s)	139, 488, 517, 530
BamHI	GGATCC	1 cut(s)	466
BanI	GGYRCC	1 cut(s)	647
BccI	CCATC	4 cut(s)	274, 448, 487, 496
BceAI	ACGGC	3 cut(s)	610, 683, 697
BciT130I	CCWGG	1 cut(s)	327
BclI	TGATCA	1 cut(s)	117
BcoDI	GTCTC	3 cut(s)	185, 218, 763
BfaI	CTAG	1 cut(s)	59
BfoI	RGCGCY	1 cut(s)	651
Bme1390I	CCNGG	1 cut(s)	327
BmeRI	GACNNNNNGTC	2 cut(s)	231, 268
BmiI	GGNNCC	4 cut(s)	46, 66, 468, 649
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	1 cut(s)	543
BpuEI	CTTGAG	1 cut(s)	723
Bsa29I	ATCGAT	2 cut(s)	491, 551
BsaHI	GRCGYC	2 cut(s)	194, 648
BsaJI	CCNNGG	1 cut(s)	462
BsaXI	ACNNNNNCTCC	2 cut(s)	574, 604
Bse118I	RCCGGY	1 cut(s)	721
BseBI	CCWGG	1 cut(s)	327
BseCI	ATCGAT	2 cut(s)	491, 551
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	1 cut(s)	579
BseMII	CTCAG	2 cut(s)	189, 258
BseRI	GAGGAG	3 cut(s)	186, 446, 512
Bsh1236I	CGCG	1 cut(s)	446
Bsh1285I	CGRYCG	1 cut(s)	491
BshNI	GGYRCC	1 cut(s)	647
BshVI	ATCGAT	2 cut(s)	491, 551
BsiEI	CGRYCG	1 cut(s)	491
BsiSI	CCGG	5 cut(s)	48, 484, 645, 651, 722
BsiWI	CGTACG	1 cut(s)	471
BsmAI	GTCTC	3 cut(s)	185, 218, 763
BsmBI	CGTCTC	2 cut(s)	185, 763
Bsp143I	GATC	8 cut(s)	117, 250, 302, 322, 412, 466, 488, 619
BspACI	CCGC	7 cut(s)	42, 62, 188, 310, 401, 446, 696
BspCNI	CTCAG	2 cut(s)	190, 259
BspDI	ATCGAT	2 cut(s)	491, 551
BspFNI	CGCG	1 cut(s)	446
BspLI	GGNNCC	4 cut(s)	46, 66, 468, 649
BspPI	GGATC	4 cut(s)	258, 317, 461, 474
BspT107I	GGYRCC	1 cut(s)	647
BsrBI	CCGCTC	1 cut(s)	310
BsrFI	RCCGGY	1 cut(s)	721
BssAI	RCCGGY	1 cut(s)	721
BssECI	CCNNGG	1 cut(s)	462
BssMI	GATC	8 cut(s)	117, 250, 302, 322, 412, 466, 488, 619
BssNI	GRCGYC	2 cut(s)	194, 648
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	4 cut(s)	127, 397, 476, 518
Bst6I	CTCTTC	5 cut(s)	31, 345, 354, 581, 759
BstACI	GRCGYC	2 cut(s)	194, 648
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	3 cut(s)	198, 267, 274
BstF5I	GGATG	1 cut(s)	579
BstFNI	CGCG	1 cut(s)	446
BstH2I	RGCGCY	1 cut(s)	651
BstHHI	GCGC	1 cut(s)	650
BstKTI	GATC	8 cut(s)	120, 253, 305, 325, 415, 469, 491, 622
BstMAI	GTCTC	3 cut(s)	185, 218, 763
BstMBI	GATC	8 cut(s)	117, 250, 302, 322, 412, 466, 488, 619
BstMCI	CGRYCG	1 cut(s)	491
BstMWI	GCNNNNNNNGC	1 cut(s)	718
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	325
BstUI	CGCG	1 cut(s)	446
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
Bsu15I	ATCGAT	2 cut(s)	491, 551
BsuTUI	ATCGAT	2 cut(s)	491, 551
BtgZI	GCGATG	1 cut(s)	467
BtsCI	GGATG	1 cut(s)	579
BtsIMutI	CAGTG	1 cut(s)	613
Cac8I	GCNNGC	1 cut(s)	558
CfoI	GCGC	1 cut(s)	650
Cfr10I	RCCGGY	1 cut(s)	721
ClaI	ATCGAT	2 cut(s)	491, 551
CseI	GACGC	2 cut(s)	202, 272
Csp6I	GTAC	2 cut(s)	420, 472
CviAII	CATG	2 cut(s)	115, 204
CviJI	RGCY	6 cut(s)	47, 527, 543, 665, 683, 777
CviKI_1	RGCY	6 cut(s)	47, 527, 543, 665, 683, 777
CviQI	GTAC	2 cut(s)	420, 472
DdeI	CTNAG	3 cut(s)	198, 267, 274
DinI	GGCGCC	1 cut(s)	649
DpnI	GATC	8 cut(s)	119, 252, 304, 324, 414, 468, 490, 621
DpnII	GATC	8 cut(s)	117, 250, 302, 322, 412, 466, 488, 619
DrdI	GACNNNNNNGTC	1 cut(s)	199
DriI	GACNNNNNGTC	2 cut(s)	231, 268
DseDI	GACNNNNNNGTC	1 cut(s)	199
Eam1104I	CTCTTC	5 cut(s)	31, 345, 354, 581, 759
Eam1105I	GACNNNNNGTC	2 cut(s)	231, 268
EarI	CTCTTC	5 cut(s)	31, 345, 354, 581, 759
EciI	GGCGGA	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	325
EgeI	GGCGCC	1 cut(s)	649
EheI	GGCGCC	1 cut(s)	649
Esp3I	CGTCTC	2 cut(s)	185, 763
FaeI	CATG	2 cut(s)	118, 207
FaiI	YATR	2 cut(s)	116, 205
FatI	CATG	2 cut(s)	114, 203
FbaI	TGATCA	1 cut(s)	117
FokI	GGATG	1 cut(s)	586
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	649
HaeII	RGCGCY	1 cut(s)	651
HapII	CCGG	5 cut(s)	48, 484, 645, 651, 722
HgaI	GACGC	2 cut(s)	202, 272
HhaI	GCGC	1 cut(s)	650
Hin1I	GRCGYC	2 cut(s)	194, 648
Hin1II	CATG	2 cut(s)	118, 207
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HpaII	CCGG	5 cut(s)	48, 484, 645, 651, 722
HphI	GGTGA	4 cut(s)	139, 488, 517, 530
Hpy166II	GTNNAC	2 cut(s)	130, 210
Hpy188III	TCNNGA	5 cut(s)	121, 254, 347, 630, 758
Hpy8I	GTNNAC	2 cut(s)	130, 210
Hpy99I	CGWCG	4 cut(s)	113, 664, 718, 721
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	4 cut(s)	127, 397, 476, 518
HpyCH4IV	ACGT	1 cut(s)	659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	718
HpyF3I	CTNAG	3 cut(s)	198, 267, 274
HpySE526I	ACGT	1 cut(s)	659
Hsp92I	GRCGYC	2 cut(s)	194, 648
Hsp92II	CATG	2 cut(s)	118, 207
HspAI	GCGC	1 cut(s)	648
KasI	GGCGCC	1 cut(s)	647
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	8 cut(s)	117, 250, 302, 322, 412, 466, 488, 619
LmnI	GCTCC	3 cut(s)	44, 307, 774
LweI	GCATC	1 cut(s)	543
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	1 cut(s)	659
MaeIII	GTNAC	6 cut(s)	74, 233, 331, 505, 512, 590
MalI	GATC	8 cut(s)	119, 252, 304, 324, 414, 468, 490, 621
MbiI	CCGCTC	1 cut(s)	310
MboI	GATC	8 cut(s)	117, 250, 302, 322, 412, 466, 488, 619
MflI	RGATCY	1 cut(s)	466
Mly113I	GGCGCC	1 cut(s)	648
MlyI	GAGTC	8 cut(s)	111, 209, 241, 254, 278, 520, 598, 627
MmeI	TCCRAC	2 cut(s)	162, 228
MnlI	CCTC	9 cut(s)	44, 78, 164, 424, 457, 490, 564, 576, 754
MseI	TTAA	1 cut(s)	781
MspI	CCGG	5 cut(s)	48, 484, 645, 651, 722
MspR9I	CCNGG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	327
MvnI	CGCG	1 cut(s)	446
MwoI	GCNNNNNNNGC	1 cut(s)	718
NarI	GGCGCC	1 cut(s)	648
NdeII	GATC	8 cut(s)	117, 250, 302, 322, 412, 466, 488, 619
NlaIII	CATG	2 cut(s)	118, 207
NlaIV	GGNNCC	4 cut(s)	46, 66, 468, 649
NmuCI	GTSAC	4 cut(s)	233, 505, 512, 590
PcsI	WCGNNNNNNNCGW	2 cut(s)	600, 710
PfeI	GAWTC	6 cut(s)	343, 458, 548, 641, 677, 754
Pfl23II	CGTACG	1 cut(s)	471
PfoI	TCCNGGA	1 cut(s)	325
Ple19I	CGATCG	1 cut(s)	491
PleI	GAGTC	8 cut(s)	110, 208, 240, 253, 277, 519, 597, 627
PluTI	GGCGCC	1 cut(s)	651
PpsI	GAGTC	8 cut(s)	110, 208, 240, 253, 277, 519, 597, 627
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspLI	CGTACG	1 cut(s)	471
PspN4I	GGNNCC	4 cut(s)	46, 66, 468, 649
PsuI	RGATCY	1 cut(s)	466
PvuI	CGATCG	1 cut(s)	491
RsaI	GTAC	2 cut(s)	421, 473
RsaNI	GTAC	2 cut(s)	420, 472
SaqAI	TTAA	1 cut(s)	781
Sau3AI	GATC	8 cut(s)	117, 250, 302, 322, 412, 466, 488, 619
SchI	GAGTC	8 cut(s)	111, 209, 241, 254, 278, 520, 598, 627
ScrFI	CCNGG	1 cut(s)	327
SetI	ASST	5 cut(s)	261, 545, 662, 745, 779
SfaNI	GCATC	1 cut(s)	543
SfoI	GGCGCC	1 cut(s)	649
SmlI	CTYRAG	1 cut(s)	738
SmoI	CTYRAG	1 cut(s)	738
SsiI	CCGC	7 cut(s)	42, 62, 188, 310, 401, 446, 696
SspDI	GGCGCC	1 cut(s)	647
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	4 cut(s)	127, 397, 476, 518
TaiI	ACGT	1 cut(s)	662
TaqI	TCGA	7 cut(s)	144, 321, 341, 368, 386, 491, 551
TfiI	GAWTC	6 cut(s)	343, 458, 548, 641, 677, 754
Tru1I	TTAA	1 cut(s)	781
Tru9I	TTAA	1 cut(s)	781
TscAI	CASTG	1 cut(s)	613
TseFI	GTSAC	4 cut(s)	233, 505, 512, 590
Tsp45I	GTSAC	4 cut(s)	233, 505, 512, 590
TspDTI	ATGAA	2 cut(s)	32, 590
TspGWI	ACGGA	2 cut(s)	459, 764
TspRI	CASTG	1 cut(s)	613
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.