Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005069

Physical Location & Seq

Genomic Coordinates Forward (+)

2854238 .. 2856192

Gene Structure 1955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g03170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGGAAGAAAATGAAGCTCCCTTTTCTCTCCAAGAACACATCAGAACTATCAAGATCTTCATCTTCTTCTTCCTCCCCATGGCCTTGGCCTTCTTGTGCTCAAACCAGAACCCTTTCTTTCAGAACAGGCAATGATATCTTCAAGACCATAAACTCAGCCTACTTTGACACCACAAACCCTACAACAGATTTGGTGCTGGTGGATAGCACACCGGACTCGTTCTTCACCAACTCATCATTTGACGAGTGTCCCAGCTTCTCCACCGTCTCTGAAGACTCAAAAGGCGGTGGAGGAGCTGGAGGAGGAGACGCAATAGAGAGTGTGATTAAAGGGTTGAGGTCAGAGAGGCTCTTCTTTGAGCCAGCTGGTCAGACAAGCTCTGTGTTAGTTGAGACCAAGGAGGCTGAGGCGGGGGCCGCGGCAGCAGCAACAGCTGATGAAGGTGGTGATGGGGTTAATAATGTTATGCCATTCAAGGAGAGTGTGGCTTTGTCAATTGACTCACCAGACCCGATTGTGGATTTCAGAAAATCTATGGAGGAAATGGTGGAAGCTCATGGCTTGAAGGATTGGGAGAATCTTGAGGACTTTTGTCGATCTCTTGAGATGATCTTGTGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

209

Amino Acids

22.31

Weight (kDa)

4.44

Isoelectric Point (pI)

50.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04820
fragaria_vesca	FvH4_6g19870
malus_domestica	MD02G1258900.v1.1 MD07G1061800.v1.1 MD07G1061900.v1.1 MD12G1034200.v1.1 MD14G1035600.v1.1
prunus_persica	Prupe.2G071500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1
pyrus_communis	pycom07g04730 pycom12g03170 pycom14g03130
rosa_chinensis	RchiOBHm_Chr3g0475291
rosa_laevigata	RLG00000023854
rosa_multiflora	Rmu_ssc0000140.1_g000002
rosa_roxburghii	Rroxscaffold_6G00406410
rosa_rugosa	Rorug03G0147700
rosa_samantha	Rh3AG197700 Rh3BG228000 Rh3DG223200
rosa_wichuraiana	Rw3G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	422
AciI	CCGC	4 cut(s)	288, 413, 420, 422
AcuI	CTGAAG	1 cut(s)	294
AfiI	CCNNNNNNNGG	2 cut(s)	81, 520
AgsI	TTSAA	3 cut(s)	145, 478, 568
AluBI	AGCT	8 cut(s)	19, 258, 299, 368, 381, 437, 557, 624
AluI	AGCT	8 cut(s)	19, 258, 299, 368, 381, 437, 557, 624
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	3 cut(s)	274, 303, 389
AoxI	GGCC	3 cut(s)	83, 89, 417
ApeKI	GCWGC	3 cut(s)	425, 428, 621
Asp700I	GAANNNNTTC	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	417
AsuHPI	GGTGA	3 cut(s)	220, 461, 498
BbsI	GAAGAC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	103
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	2 cut(s)	437, 440
BccI	CCATC	1 cut(s)	446
BcoDI	GTCTC	3 cut(s)	274, 303, 389
BglII	AGATCT	1 cut(s)	56
BisI	GCNGC	5 cut(s)	420, 423, 426, 429, 622
BlsI	GCNGC	5 cut(s)	421, 424, 427, 430, 623
BmgT120I	GGNCC	1 cut(s)	417
BmiI	GGNNCC	1 cut(s)	418
BoxI	GACNNNNGTC	2 cut(s)	249, 594
BpiI	GAAGAC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	2 cut(s)	605, 626
BsaBI	GATNNNNATC	1 cut(s)	61
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	4 cut(s)	80, 86, 399, 420
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 520
Bse3DI	GCAATG	1 cut(s)	139
Bse8I	GATNNNNATC	1 cut(s)	61
BseDI	CCNNGG	4 cut(s)	80, 86, 399, 420
BseJI	GATNNNNATC	1 cut(s)	61
BseLI	CCNNNNNNNGG	2 cut(s)	81, 520
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	2 cut(s)	171, 399
BseRI	GAGGAG	3 cut(s)	309, 318, 321
BseXI	GCAGC	2 cut(s)	437, 440
BseYI	CCCAGC	1 cut(s)	254
Bsh1236I	CGCG	1 cut(s)	422
BshFI	GGCC	3 cut(s)	85, 91, 419
BsiHKAI	GWGCWC	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	237
BslI	CCNNNNNNNGG	2 cut(s)	81, 520
BsmAI	GTCTC	3 cut(s)	274, 303, 389
BsmBI	CGTCTC	2 cut(s)	274, 303
BsmFI	GGGAC	1 cut(s)	237
BsnI	GGCC	3 cut(s)	85, 91, 419
Bso31I	GGTCTC	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	3 cut(s)	56, 599, 612
Bsp19I	CCATGG	1 cut(s)	80
BspACI	CCGC	4 cut(s)	288, 413, 420, 422
BspANI	GGCC	3 cut(s)	85, 91, 419
BspCNI	CTCAG	2 cut(s)	170, 400
BspFNI	CGCG	1 cut(s)	422
BspLI	GGNNCC	1 cut(s)	418
BspQI	GCTCTTC	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	139
BssECI	CCNNGG	4 cut(s)	80, 86, 399, 420
BssMI	GATC	3 cut(s)	56, 599, 612
BssT1I	CCWWGG	3 cut(s)	80, 86, 399
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	359
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	2 cut(s)	157, 408
BstDSI	CCRYGG	2 cut(s)	80, 420
BstFNI	CGCG	1 cut(s)	422
BstKTI	GATC	3 cut(s)	59, 602, 615
BstMAI	GTCTC	3 cut(s)	274, 303, 389
BstMBI	GATC	3 cut(s)	56, 599, 612
BstMWI	GCNNNNNNNGC	4 cut(s)	419, 425, 428, 434
BstPAI	GACNNNNGTC	2 cut(s)	249, 594
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	2 cut(s)	437, 440
BstV2I	GAAGAC	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	56
BstXI	CCANNNNNNTGG	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	56
BsuRI	GGCC	3 cut(s)	85, 91, 419
BtgI	CCRYGG	2 cut(s)	80, 420
Cac8I	GCNNGC	1 cut(s)	366
Cfr13I	GGNCC	1 cut(s)	417
Cfr42I	CCGCGG	1 cut(s)	423
CseI	GACGC	1 cut(s)	320
CviAII	CATG	2 cut(s)	81, 560
DdeI	CTNAG	2 cut(s)	157, 408
DpnI	GATC	3 cut(s)	58, 601, 614
DpnII	GATC	3 cut(s)	56, 599, 612
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Eco130I	CCWWGG	3 cut(s)	80, 86, 399
Eco31I	GGTCTC	1 cut(s)	389
Eco32I	GATATC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	294
EcoRV	GATATC	1 cut(s)	139
EcoT14I	CCWWGG	3 cut(s)	80, 86, 399
ErhI	CCWWGG	3 cut(s)	80, 86, 399
Esp3I	CGTCTC	2 cut(s)	274, 303
FaeI	CATG	2 cut(s)	84, 563
FaiI	YATR	5 cut(s)	82, 152, 470, 539, 561
FaqI	GGGAC	1 cut(s)	237
FatI	CATG	2 cut(s)	80, 559
FauI	CCCGC	1 cut(s)	406
Fnu4HI	GCNGC	5 cut(s)	420, 423, 426, 429, 622
Fsp4HI	GCNGC	5 cut(s)	420, 423, 426, 429, 622
GluI	GCNGC	5 cut(s)	420, 423, 426, 429, 622
GsaI	CCCAGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	3 cut(s)	85, 91, 419
HapII	CCGG	1 cut(s)	215
HgaI	GACGC	1 cut(s)	320
Hin1II	CATG	2 cut(s)	84, 563
HinfI	GANTC	4 cut(s)	218, 278, 503, 580
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	3 cut(s)	220, 461, 498
Hpy188I	TCNGA	6 cut(s)	46, 125, 274, 346, 375, 530
Hpy188III	TCNNGA	4 cut(s)	54, 145, 584, 605
HpyAV	CCTTC	3 cut(s)	102, 437, 562
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	1 cut(s)	621
HpyF10VI	GCNNNNNNNGC	4 cut(s)	419, 425, 428, 434
HpyF3I	CTNAG	2 cut(s)	157, 408
Hsp92II	CATG	2 cut(s)	84, 563
KspI	CCGCGG	1 cut(s)	423
Kzo9I	GATC	3 cut(s)	56, 599, 612
LguI	GCTCTTC	1 cut(s)	359
LmnI	GCTCC	2 cut(s)	24, 296
LpnPI	CCDG	9 cut(s)	114, 121, 185, 228, 268, 285, 354, 378, 522
Lsp1109I	GCAGC	2 cut(s)	437, 440
MalI	GATC	3 cut(s)	58, 601, 614
MboI	GATC	3 cut(s)	56, 599, 612
MboII	GAAGA	9 cut(s)	19, 51, 57, 60, 63, 133, 217, 287, 346
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	1 cut(s)	56
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	1 cut(s)	498
MlyI	GAGTC	3 cut(s)	212, 272, 497
MroXI	GAANNNNTTC	1 cut(s)	115
MseI	TTAA	2 cut(s)	330, 459
MspA1I	CMGCKG	4 cut(s)	368, 422, 437, 624
MspI	CCGG	1 cut(s)	215
MunI	CAATTG	1 cut(s)	498
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	4 cut(s)	419, 425, 428, 434
NcoI	CCATGG	1 cut(s)	80
NdeII	GATC	3 cut(s)	56, 599, 612
NlaIII	CATG	2 cut(s)	84, 563
NlaIV	GGNNCC	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	359
PdmI	GAANNNNTTC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	580
PkrI	GCNGC	5 cut(s)	421, 424, 427, 430, 623
PleI	GAGTC	3 cut(s)	212, 272, 497
PpsI	GAGTC	3 cut(s)	212, 272, 497
PshAI	GACNNNNGTC	2 cut(s)	249, 594
PspFI	CCCAGC	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	1 cut(s)	417
PsuI	RGATCY	1 cut(s)	56
PvuII	CAGCTG	3 cut(s)	368, 437, 624
SacII	CCGCGG	1 cut(s)	423
SapI	GCTCTTC	1 cut(s)	359
SaqAI	TTAA	2 cut(s)	330, 459
SatI	GCNGC	5 cut(s)	420, 423, 426, 429, 622
Sau3AI	GATC	3 cut(s)	56, 599, 612
Sau96I	GGNCC	1 cut(s)	417
SchI	GAGTC	3 cut(s)	212, 272, 497
SduI	GDGCHC	1 cut(s)	103
Sfr303I	CCGCGG	1 cut(s)	423
SgrBI	CCGCGG	1 cut(s)	423
SmlI	CTYRAG	2 cut(s)	584, 605
SmoI	CTYRAG	2 cut(s)	584, 605
Sse9I	AATT	1 cut(s)	498
SsiI	CCGC	4 cut(s)	288, 413, 420, 422
StyI	CCWWGG	3 cut(s)	80, 86, 399
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	1 cut(s)	598
TasI	AATT	1 cut(s)	498
TauI	GCSGC	2 cut(s)	422, 425
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	2 cut(s)	330, 459
Tru9I	TTAA	2 cut(s)	330, 459
TseI	GCWGC	3 cut(s)	425, 428, 621
TspDTI	ATGAA	3 cut(s)	29, 51, 456
XmnI	GAANNNNTTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.