Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000140.1

Orthogroup ID

OG0005069

Physical Location & Seq

Genomic Coordinates Forward (+)

18198 .. 19088

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000140.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgaagcttctcccttcttctctgttcaagaatacagcacaagcaccagagccaaagtcttcttcttcctcttggccctggccttcttgcacacaaaccagaaccatctccttcagaattcccggcaatgatattttcaagaccataaactcggcctacttcgacaccaacacgcccgagtccttcttcactaactcctctgagggctgcccgagtttctccacaacagtttctgaagaagagtcctcgggcggaggaggagatccgatagagactgtgatcaacaaagggttgagatcagagcggctcttcttcgagcccggtgagaccagctctattttagacaaggaatctatcaaggatgatgatgaagaagaagacgatggggttgatgatgaacttgctgttggtgataataacattccattcaaggagagtgtggctttgtcaatggactcgccggacccgtatgtggatttcagaaaatccatggaggaaatggtggaagctcatggtttgaaggactgggaacaacttgaagagcttttgtgttggtatttgagggtcaatggaaaatcaaatcatggatatattgttggagctttcgttgatcttttggtaggtctcgcatttagtactactatttctcctccttcttgttcatgtagtgagtactctccttctactcctttgtctttttacaacagtactacttcttgttcatcttcttctacctctactccttgcgtgtcctccattggacctgaggaaggatcggaaatgagtaccagcatcattccttatttgtcatccctattagaagctgaggaagagattaatgaagaacaagatgatgacgatgatgatgatgatgatggtgcttcatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

296

Amino Acids

32.26

Weight (kDa)

4.05

Isoelectric Point (pI)

59.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04820
fragaria_vesca	FvH4_6g19870
malus_domestica	MD02G1258900.v1.1 MD07G1061800.v1.1 MD07G1061900.v1.1 MD12G1034200.v1.1 MD14G1035600.v1.1
prunus_persica	Prupe.2G071500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1
pyrus_communis	pycom07g04730 pycom12g03170 pycom14g03130
rosa_chinensis	RchiOBHm_Chr3g0475291
rosa_laevigata	RLG00000023854
rosa_multiflora	Rmu_ssc0000140.1_g000002
rosa_roxburghii	Rroxscaffold_6G00406410
rosa_rugosa	Rorug03G0147700
rosa_samantha	Rh3AG197700 Rh3BG228000 Rh3DG223200
rosa_wichuraiana	Rw3G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	304
AciI	CCGC	2 cut(s)	252, 304
AclWI	GGATC	2 cut(s)	257, 781
AcsI	RAATTY	1 cut(s)	117
AcuI	CTGAAG	2 cut(s)	97, 255
AfaI	GTAC	4 cut(s)	637, 674, 709, 787
AfiI	CCNNNNNNNGG	2 cut(s)	472, 770
AgsI	TTSAA	5 cut(s)	28, 139, 430, 520, 539
AjnI	CCWGG	1 cut(s)	77
AjuI	GAANNNNNNNTTGG	4 cut(s)	46, 78, 390, 422
AluBI	AGCT	6 cut(s)	7, 333, 509, 544, 602, 824
AluI	AGCT	6 cut(s)	7, 333, 509, 544, 602, 824
Alw26I	GTCTC	3 cut(s)	266, 320, 629
AlwI	GGATC	2 cut(s)	257, 781
AlwNI	CAGNNNCTG	1 cut(s)	233
Ama87I	CYCGRG	3 cut(s)	176, 211, 247
AoxI	GGCC	3 cut(s)	74, 80, 153
ApeKI	GCWGC	1 cut(s)	207
ApoI	RAATTY	1 cut(s)	117
AseI	ATTAAT	1 cut(s)	837
AspS9I	GGNCC	3 cut(s)	75, 463, 761
AsuC2I	CCSGG	2 cut(s)	123, 321
AsuHPI	GGTGA	2 cut(s)	335, 422
AvaI	CYCGRG	3 cut(s)	176, 211, 247
AvaII	GGWCC	2 cut(s)	463, 761
AxyI	CCTNAGG	1 cut(s)	765
BanII	GRGCYC	1 cut(s)	321
BbsI	GAAGAC	2 cut(s)	51, 384
BbvCI	CCTCAGC	1 cut(s)	825
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	3 cut(s)	113, 377, 869
BciT130I	CCWGG	1 cut(s)	79
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	2 cut(s)	123, 321
BcoDI	GTCTC	3 cut(s)	266, 320, 629
BisI	GCNGC	2 cut(s)	208, 305
BlsI	GCNGC	2 cut(s)	209, 306
BmcAI	AGTACT	3 cut(s)	637, 674, 709
Bme1390I	CCNGG	3 cut(s)	79, 123, 321
Bme18I	GGWCC	2 cut(s)	463, 761
BmeT110I	CYCGRG	3 cut(s)	176, 211, 247
BmgT120I	GGNCC	3 cut(s)	75, 463, 761
BmiI	GGNNCC	1 cut(s)	465
BmrFI	CCNGG	3 cut(s)	79, 123, 321
BmrI	ACTGGG	1 cut(s)	535
BmsI	GCATC	1 cut(s)	801
BmuI	ACTGGG	1 cut(s)	535
BpiI	GAAGAC	2 cut(s)	51, 384
BplI	GAGNNNNNCTC	2 cut(s)	317, 349
Bpu10I	CCTNAGC	1 cut(s)	825
BpuMI	CCSGG	2 cut(s)	123, 321
BsaI	GGTCTC	2 cut(s)	320, 629
BsaJI	CCNNGG	3 cut(s)	77, 246, 489
BsaXI	ACNNNNNCTCC	6 cut(s)	591, 621, 631, 661, 724, 754
Bsc4I	CCNNNNNNNGG	2 cut(s)	472, 770
Bse1I	ACTGG	1 cut(s)	530
Bse21I	CCTNAGG	1 cut(s)	765
Bse3DI	GCAATG	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	3 cut(s)	77, 246, 489
BseGI	GGATG	2 cut(s)	367, 809
BseLI	CCNNNNNNNGG	2 cut(s)	472, 770
BseMI	GCAATG	1 cut(s)	133
BseMII	CTCAG	3 cut(s)	192, 756, 816
BseNI	ACTGG	1 cut(s)	530
BseRI	GAGGAG	4 cut(s)	187, 270, 273, 639
BseXI	GCAGC	1 cut(s)	194
BshFI	GGCC	3 cut(s)	76, 82, 155
BsiHKCI	CYCGRG	3 cut(s)	176, 211, 247
BsiSI	CCGG	3 cut(s)	123, 321, 461
BslI	CCNNNNNNNGG	2 cut(s)	472, 770
BsmAI	GTCTC	3 cut(s)	266, 320, 629
BsnI	GGCC	3 cut(s)	76, 82, 155
Bso31I	GGTCTC	2 cut(s)	320, 629
BsoBI	CYCGRG	3 cut(s)	176, 211, 247
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	5 cut(s)	262, 279, 296, 610, 773
Bsp19I	CCATGG	1 cut(s)	489
BspACI	CCGC	2 cut(s)	252, 304
BspANI	GGCC	3 cut(s)	76, 82, 155
BspCNI	CTCAG	3 cut(s)	193, 757, 817
BspLI	GGNNCC	1 cut(s)	465
BspPI	GGATC	2 cut(s)	257, 781
BspQI	GCTCTTC	2 cut(s)	314, 534
BspTNI	GGTCTC	2 cut(s)	320, 629
BsrBI	CCGCTC	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	530
BssECI	CCNNGG	3 cut(s)	77, 246, 489
BssMI	GATC	5 cut(s)	262, 279, 296, 610, 773
BssT1I	CCWWGG	1 cut(s)	489
Bst2UI	CCWGG	1 cut(s)	79
Bst4CI	ACNGT	3 cut(s)	229, 277, 707
Bst6I	CTCTTC	4 cut(s)	234, 314, 534, 825
BstDEI	CTNAG	4 cut(s)	201, 765, 825, 888
BstDSI	CCRYGG	1 cut(s)	489
BstENI	CCTNNNNNAGG	1 cut(s)	768
BstF5I	GGATG	2 cut(s)	367, 809
BstKTI	GATC	5 cut(s)	265, 282, 299, 613, 776
BstMAI	GTCTC	3 cut(s)	266, 320, 629
BstMBI	GATC	5 cut(s)	262, 279, 296, 610, 773
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	3 cut(s)	77, 121, 319
BstV1I	GCAGC	1 cut(s)	194
BstV2I	GAAGAC	2 cut(s)	51, 384
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
Bsu36I	CCTNAGG	1 cut(s)	765
BsuRI	GGCC	3 cut(s)	76, 82, 155
BtgI	CCRYGG	1 cut(s)	489
BtsCI	GGATG	2 cut(s)	367, 809
CaiI	CAGNNNCTG	1 cut(s)	233
Cfr13I	GGNCC	3 cut(s)	75, 463, 761
Csp6I	GTAC	4 cut(s)	636, 673, 708, 786
CviAII	CATG	4 cut(s)	490, 512, 584, 663
CviQI	GTAC	4 cut(s)	636, 673, 708, 786
DdeI	CTNAG	4 cut(s)	201, 765, 825, 888
DpnI	GATC	5 cut(s)	264, 281, 298, 612, 775
DpnII	GATC	5 cut(s)	262, 279, 296, 610, 773
Eam1104I	CTCTTC	4 cut(s)	234, 314, 534, 825
EarI	CTCTTC	4 cut(s)	234, 314, 534, 825
EciI	GGCGGA	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	489
Eco24I	GRGCYC	1 cut(s)	321
Eco31I	GGTCTC	2 cut(s)	320, 629
Eco47I	GGWCC	2 cut(s)	463, 761
Eco57I	CTGAAG	2 cut(s)	97, 255
Eco81I	CCTNAGG	1 cut(s)	765
Eco88I	CYCGRG	3 cut(s)	176, 211, 247
EcoNI	CCTNNNNNAGG	1 cut(s)	768
EcoRI	GAATTC	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	489
EcoT38I	GRGCYC	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	4 cut(s)	493, 515, 587, 666
FaiI	YATR	7 cut(s)	146, 471, 491, 513, 585, 591, 664
FatI	CATG	4 cut(s)	489, 511, 583, 662
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	208, 305
FokI	GGATG	2 cut(s)	374, 796
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	2 cut(s)	208, 305
GluI	GCNGC	2 cut(s)	208, 305
HaeIII	GGCC	3 cut(s)	76, 82, 155
HapII	CCGG	3 cut(s)	123, 321, 461
Hin1II	CATG	4 cut(s)	493, 515, 587, 666
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	4 cut(s)	179, 242, 350, 455
HpaII	CCGG	3 cut(s)	123, 321, 461
HphI	GGTGA	2 cut(s)	335, 422
Hpy188I	TCNGA	7 cut(s)	116, 202, 235, 267, 301, 482, 778
Hpy188III	TCNNGA	2 cut(s)	28, 139
HpyAV	CCTTC	8 cut(s)	24, 93, 121, 193, 514, 663, 690, 764
HpyCH4III	ACNGT	3 cut(s)	229, 277, 707
HpyCH4V	TGCA	1 cut(s)	90
HpyF3I	CTNAG	4 cut(s)	201, 765, 825, 888
Hsp92II	CATG	4 cut(s)	493, 515, 587, 666
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	5 cut(s)	262, 279, 296, 610, 773
LguI	GCTCTTC	2 cut(s)	314, 534
LmnI	GCTCC	1 cut(s)	599
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	1 cut(s)	801
MalI	GATC	5 cut(s)	264, 281, 298, 612, 775
MbiI	CCGCTC	1 cut(s)	304
MboI	GATC	5 cut(s)	262, 279, 296, 610, 773
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	1 cut(s)	117
MlyI	GAGTC	3 cut(s)	188, 251, 449
MmeI	TCCRAC	1 cut(s)	577
MseI	TTAA	1 cut(s)	837
MspI	CCGG	3 cut(s)	123, 321, 461
MspR9I	CCNGG	3 cut(s)	79, 123, 321
MvaI	CCWGG	1 cut(s)	79
NciI	CCSGG	2 cut(s)	123, 321
NcoI	CCATGG	1 cut(s)	489
NdeII	GATC	5 cut(s)	262, 279, 296, 610, 773
NlaIII	CATG	4 cut(s)	493, 515, 587, 666
NlaIV	GGNNCC	1 cut(s)	465
NmeAIII	GCCGAG	1 cut(s)	131
PciSI	GCTCTTC	2 cut(s)	314, 534
PcsI	WCGNNNNNNNCGW	1 cut(s)	464
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	2 cut(s)	209, 306
PleI	GAGTC	3 cut(s)	187, 250, 449
PpsI	GAGTC	3 cut(s)	187, 250, 449
PshBI	ATTAAT	1 cut(s)	837
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	465
PspPI	GGNCC	3 cut(s)	75, 463, 761
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	4 cut(s)	637, 674, 709, 787
RsaNI	GTAC	4 cut(s)	636, 673, 708, 786
SapI	GCTCTTC	2 cut(s)	314, 534
SaqAI	TTAA	1 cut(s)	837
SatI	GCNGC	2 cut(s)	208, 305
Sau3AI	GATC	5 cut(s)	262, 279, 296, 610, 773
Sau96I	GGNCC	3 cut(s)	75, 463, 761
ScaI	AGTACT	3 cut(s)	637, 674, 709
SchI	GAGTC	3 cut(s)	188, 251, 449
ScrFI	CCNGG	3 cut(s)	79, 123, 321
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	9 cut(s)	9, 335, 511, 546, 604, 625, 737, 766, 826
SfaNI	GCATC	1 cut(s)	801
SinI	GGWCC	2 cut(s)	463, 761
Sse9I	AATT	1 cut(s)	117
SsiI	CCGC	2 cut(s)	252, 304
StyD4I	CCNGG	3 cut(s)	77, 121, 319
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	3 cut(s)	229, 277, 707
TaqI	TCGA	2 cut(s)	162, 315
TasI	AATT	1 cut(s)	117
TatI	WGTACW	3 cut(s)	635, 672, 707
TauI	GCSGC	1 cut(s)	307
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	1 cut(s)	837
Tru9I	TTAA	1 cut(s)	837
TseI	GCWGC	1 cut(s)	207
TspDTI	ATGAA	7 cut(s)	17, 384, 411, 651, 711, 855, 873
VpaK11BI	GGWCC	2 cut(s)	463, 761
VspI	ATTAAT	1 cut(s)	837
XagI	CCTNNNNNAGG	1 cut(s)	768
XapI	RAATTY	1 cut(s)	117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	496
ZrmI	AGTACT	3 cut(s)	637, 674, 709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.