Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005069

Physical Location & Seq

Genomic Coordinates Forward (+)

5803793 .. 5804548

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1061900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAAGTTGCCTCGTCTCTTCAAAAAGAAGGAAACAACATCGGCAGTGCCATGGCAGTACTGGCCCTCTTGCAACCACCCCAAGACGCTTTCCTTCCGAGCCGGCAGTGGGAGTGGCAGTGACAACATGTTCAAGACTGACAACTCCGTCTTGTTCGATCCAGTTACGGAAGGAGGAGCTGATCAGTCTTGGTTCATAAACTCCTCCTCCTCCTCAGATAATCAGTCAACAACCGAGTGTGATCATGAGGACGGAGAGGAGTCCTTGGATACGGTGGTTGTCCGAGGGGCAAGATCCGAAAGGCTGTTTTTCAAGGCGGAAGACACGAGCTCCATGGTACAAAAGGCGAAAGGCGCCGGCGGAGGAGAGATGATGAATCCGTTGTTGAAGGAAAAGTACGTGGTGGTGTTAGCCAGCATGGAATCGGAGGATCCGTTGAAAGATTTTAGGAGGTCAATGGAGGAGATGGTGGAATGTCATGGGCTTAGTAAAGATTGGGAGGGTTTGGAGGAGTTGTTGGGATGGTATTTGAAGGTCAACCAGAAGAGCAACCATGGCTTTATAGTGGCAGCATTTGTGGATCTCCTTCTTGCTCTTTCTGCTGCTGCAGCTGCTCCTTCTCATCCTAATGATTATTATTCCACCTCTTTTTCTTCTGCCATTTCTTCTTTTTCTAGATCTTCTCCACTGTCATCTTCTTTTCAAGGTCAGGAGGAGGATGACATTGCAGAACAAGTAGAGATCACAATGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

252

Amino Acids

27.66

Weight (kDa)

4.74

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	142 - 199	6e-24	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04820
fragaria_vesca	FvH4_6g19870
malus_domestica	MD02G1258900.v1.1 MD07G1061800.v1.1 MD07G1061900.v1.1 MD12G1034200.v1.1 MD14G1035600.v1.1
prunus_persica	Prupe.2G071500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1
pyrus_communis	pycom07g04730 pycom12g03170 pycom14g03130
rosa_chinensis	RchiOBHm_Chr3g0475291
rosa_laevigata	RLG00000023854
rosa_multiflora	Rmu_ssc0000140.1_g000002
rosa_roxburghii	Rroxscaffold_6G00406410
rosa_rugosa	Rorug03G0147700
rosa_samantha	Rh3AG197700 Rh3BG228000 Rh3DG223200
rosa_wichuraiana	Rw3G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	353
AciI	CCGC	2 cut(s)	317, 360
AclWI	GGATC	5 cut(s)	152, 288, 425, 438, 588
AcyI	GRCGYC	1 cut(s)	354
AfaI	GTAC	3 cut(s)	59, 339, 398
AfiI	CCNNNNNNNGG	1 cut(s)	108
AflIII	ACRYGT	1 cut(s)	126
AgsI	TTSAA	7 cut(s)	22, 133, 313, 388, 439, 532, 704
AluBI	AGCT	3 cut(s)	179, 330, 611
AluI	AGCT	3 cut(s)	179, 330, 611
Alw21I	GWGCWC	1 cut(s)	332
Alw26I	GTCTC	1 cut(s)	20
AlwI	GGATC	5 cut(s)	152, 288, 425, 438, 588
AoxI	GGCC	1 cut(s)	62
ApeKI	GCWGC	5 cut(s)	569, 602, 605, 608, 611
AspLEI	GCGC	1 cut(s)	356
AspS9I	GGNCC	1 cut(s)	63
BaeI	ACNNNNGTAYC	2 cut(s)	261, 294
BamHI	GGATCC	1 cut(s)	430
BanI	GGYRCC	1 cut(s)	353
BanII	GRGCYC	1 cut(s)	332
BarI	GAAGNNNNNNTAC	2 cut(s)	380, 412
BauI	CACGAG	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	332
BbvI	GCAGC	5 cut(s)	581, 589, 592, 598, 620
BccI	CCATC	2 cut(s)	460, 516
BciVI	GTATCC	1 cut(s)	262
BclI	TGATCA	2 cut(s)	181, 241
BcoDI	GTCTC	1 cut(s)	20
BfaI	CTAG	1 cut(s)	675
BfmI	CTRYAG	1 cut(s)	606
BfoI	RGCGCY	1 cut(s)	357
BfuI	GTATCC	1 cut(s)	262
BglII	AGATCT	1 cut(s)	677
BisI	GCNGC	5 cut(s)	570, 603, 606, 609, 612
BlsI	GCNGC	5 cut(s)	571, 604, 607, 610, 613
BmcAI	AGTACT	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	2 cut(s)	355, 432
BpiI	GAAGAC	1 cut(s)	327
BsaAI	YACGTR	1 cut(s)	400
BsaHI	GRCGYC	1 cut(s)	354
BsaJI	CCNNGG	5 cut(s)	50, 264, 283, 333, 553
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse118I	RCCGGY	2 cut(s)	101, 356
Bse1I	ACTGG	2 cut(s)	65, 161
Bse3DI	GCAATG	1 cut(s)	723
BseDI	CCNNGG	5 cut(s)	50, 264, 283, 333, 553
BseGI	GGATG	3 cut(s)	527, 622, 724
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	723
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	2 cut(s)	65, 161
BseXI	GCAGC	5 cut(s)	581, 589, 592, 598, 620
BshFI	GGCC	1 cut(s)	64
BshNI	GGYRCC	1 cut(s)	353
BsiHKAI	GWGCWC	1 cut(s)	332
BsiSI	CCGG	2 cut(s)	102, 357
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	20
BsmBI	CGTCTC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	8 cut(s)	157, 181, 241, 293, 430, 580, 677, 741
Bsp19I	CCATGG	3 cut(s)	50, 333, 553
BspACI	CCGC	2 cut(s)	317, 360
BspANI	GGCC	1 cut(s)	64
BspCNI	CTCAG	1 cut(s)	227
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	355, 432
BspMAI	CTGCAG	1 cut(s)	610
BspPI	GGATC	5 cut(s)	152, 288, 425, 438, 588
BspQI	GCTCTTC	1 cut(s)	539
BspT107I	GGYRCC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	723
BsrFI	RCCGGY	2 cut(s)	101, 356
BsrI	ACTGG	2 cut(s)	65, 161
BssAI	RCCGGY	2 cut(s)	101, 356
BssECI	CCNNGG	5 cut(s)	50, 264, 283, 333, 553
BssMI	GATC	8 cut(s)	157, 181, 241, 293, 430, 580, 677, 741
BssNI	GRCGYC	1 cut(s)	354
BssSI	CACGAG	1 cut(s)	325
BssT1I	CCWWGG	4 cut(s)	50, 264, 333, 553
Bst2BI	CACGAG	1 cut(s)	325
Bst4CI	ACNGT	2 cut(s)	274, 690
Bst6I	CTCTTC	2 cut(s)	23, 539
BstACI	GRCGYC	1 cut(s)	354
BstBAI	YACGTR	1 cut(s)	400
BstC8I	GCNNGC	3 cut(s)	103, 358, 415
BstDEI	CTNAG	3 cut(s)	214, 485, 753
BstDSI	CCRYGG	3 cut(s)	50, 333, 553
BstF5I	GGATG	3 cut(s)	527, 622, 724
BstH2I	RGCGCY	1 cut(s)	357
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	8 cut(s)	160, 184, 244, 296, 433, 583, 680, 744
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	8 cut(s)	157, 181, 241, 293, 430, 580, 677, 741
BstMWI	GCNNNNNNNGC	6 cut(s)	61, 353, 555, 599, 608, 611
BstNSI	RCATGY	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	606
BstV1I	GCAGC	5 cut(s)	581, 589, 592, 598, 620
BstV2I	GAAGAC	1 cut(s)	327
BstX2I	RGATCY	4 cut(s)	293, 430, 580, 677
BstYI	RGATCY	4 cut(s)	293, 430, 580, 677
BsuI	GTATCC	1 cut(s)	262
BsuRI	GGCC	1 cut(s)	64
BtgI	CCRYGG	3 cut(s)	50, 333, 553
BtsCI	GGATG	3 cut(s)	527, 622, 724
BtsI	GCAGTG	3 cut(s)	51, 112, 124
BtsIMutI	CAGTG	4 cut(s)	51, 112, 124, 686
Cac8I	GCNNGC	3 cut(s)	103, 358, 415
CciI	TCATGA	1 cut(s)	244
CfoI	GCGC	1 cut(s)	356
Cfr10I	RCCGGY	2 cut(s)	101, 356
Cfr13I	GGNCC	1 cut(s)	63
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	3 cut(s)	58, 338, 397
CviAII	CATG	7 cut(s)	51, 127, 245, 334, 418, 479, 554
CviJI	RGCY	9 cut(s)	64, 101, 179, 304, 330, 413, 484, 558, 611
CviKI_1	RGCY	9 cut(s)	64, 101, 179, 304, 330, 413, 484, 558, 611
CviQI	GTAC	3 cut(s)	58, 338, 397
DdeI	CTNAG	3 cut(s)	214, 485, 753
DinI	GGCGCC	1 cut(s)	355
DpnI	GATC	8 cut(s)	159, 183, 243, 295, 432, 582, 679, 743
DpnII	GATC	8 cut(s)	157, 181, 241, 293, 430, 580, 677, 741
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
Eam1104I	CTCTTC	2 cut(s)	23, 539
EarI	CTCTTC	2 cut(s)	23, 539
EciI	GGCGGA	2 cut(s)	332, 375
Ecl136II	GAGCTC	1 cut(s)	330
Eco130I	CCWWGG	4 cut(s)	50, 264, 333, 553
Eco24I	GRGCYC	1 cut(s)	332
Eco53kI	GAGCTC	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	330
EcoT14I	CCWWGG	4 cut(s)	50, 264, 333, 553
EcoT38I	GRGCYC	1 cut(s)	332
EgeI	GGCGCC	1 cut(s)	355
EheI	GGCGCC	1 cut(s)	355
ErhI	CCWWGG	4 cut(s)	50, 264, 333, 553
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	7 cut(s)	54, 130, 248, 337, 421, 482, 557
FaiI	YATR	9 cut(s)	52, 128, 197, 246, 335, 419, 480, 555, 563
FatI	CATG	7 cut(s)	50, 126, 244, 333, 417, 478, 553
FbaI	TGATCA	2 cut(s)	181, 241
Fnu4HI	GCNGC	5 cut(s)	570, 603, 606, 609, 612
FokI	GGATG	3 cut(s)	534, 609, 731
FriOI	GRGCYC	1 cut(s)	332
Fsp4HI	GCNGC	5 cut(s)	570, 603, 606, 609, 612
FspBI	CTAG	1 cut(s)	675
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	5 cut(s)	570, 603, 606, 609, 612
HaeII	RGCGCY	1 cut(s)	357
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	2 cut(s)	102, 357
HgaI	GACGC	1 cut(s)	94
HhaI	GCGC	1 cut(s)	356
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	7 cut(s)	54, 130, 248, 337, 421, 482, 557
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HincII	GTYRAC	2 cut(s)	228, 538
HindII	GTYRAC	2 cut(s)	228, 538
HinfI	GANTC	3 cut(s)	260, 376, 422
HpaII	CCGG	2 cut(s)	102, 357
Hpy166II	GTNNAC	2 cut(s)	228, 538
Hpy188I	TCNGA	5 cut(s)	98, 217, 284, 298, 427
Hpy188III	TCNNGA	4 cut(s)	133, 245, 675, 710
Hpy8I	GTNNAC	2 cut(s)	228, 538
HpyAV	CCTTC	7 cut(s)	22, 103, 164, 382, 526, 596, 627
HpyCH4III	ACNGT	2 cut(s)	274, 690
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	3 cut(s)	72, 608, 728
HpyF10VI	GCNNNNNNNGC	6 cut(s)	61, 353, 555, 599, 608, 611
HpyF3I	CTNAG	3 cut(s)	214, 485, 753
HpySE526I	ACGT	1 cut(s)	399
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	7 cut(s)	54, 130, 248, 337, 421, 482, 557
HspAI	GCGC	1 cut(s)	354
KasI	GGCGCC	1 cut(s)	353
KroI	GCCGGC	2 cut(s)	101, 356
KroNI	GCCGGC	2 cut(s)	103, 358
Ksp22I	TGATCA	2 cut(s)	181, 241
Kzo9I	GATC	8 cut(s)	157, 181, 241, 293, 430, 580, 677, 741
LguI	GCTCTTC	1 cut(s)	539
LmnI	GCTCC	3 cut(s)	176, 335, 619
LpnPI	CCDG	7 cut(s)	46, 115, 174, 370, 427, 554, 695
Lsp1109I	GCAGC	5 cut(s)	581, 589, 592, 598, 620
MaeI	CTAG	1 cut(s)	675
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	2 cut(s)	119, 163
MalI	GATC	8 cut(s)	159, 183, 243, 295, 432, 582, 679, 743
MboI	GATC	8 cut(s)	157, 181, 241, 293, 430, 580, 677, 741
MboII	GAAGA	7 cut(s)	10, 332, 556, 645, 657, 672, 687
MflI	RGATCY	4 cut(s)	293, 430, 580, 677
MhlI	GDGCHC	1 cut(s)	332
Mly113I	GGCGCC	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	269
MreI	CGCCGGCG	1 cut(s)	356
MroNI	GCCGGC	2 cut(s)	101, 356
MslI	CAYNNNNRTG	1 cut(s)	627
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	2 cut(s)	102, 357
MwoI	GCNNNNNNNGC	6 cut(s)	61, 353, 555, 599, 608, 611
NaeI	GCCGGC	2 cut(s)	103, 358
NarI	GGCGCC	1 cut(s)	354
NcoI	CCATGG	3 cut(s)	50, 333, 553
NdeII	GATC	8 cut(s)	157, 181, 241, 293, 430, 580, 677, 741
NgoMIV	GCCGGC	2 cut(s)	101, 356
NlaIII	CATG	7 cut(s)	54, 130, 248, 337, 421, 482, 557
NlaIV	GGNNCC	2 cut(s)	355, 432
NmuCI	GTSAC	1 cut(s)	119
NspI	RCATGY	1 cut(s)	130
PagI	TCATGA	1 cut(s)	244
PciI	ACATGT	1 cut(s)	126
PciSI	GCTCTTC	1 cut(s)	539
PcsI	WCGNNNNNNNCGW	1 cut(s)	431
PdiI	GCCGGC	2 cut(s)	103, 358
PfeI	GAWTC	2 cut(s)	376, 422
PkrI	GCNGC	5 cut(s)	571, 604, 607, 610, 613
PleI	GAGTC	1 cut(s)	268
PluTI	GGCGCC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	268
Ppu21I	YACGTR	1 cut(s)	400
PscI	ACATGT	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	332
PspN4I	GGNNCC	2 cut(s)	355, 432
PspPI	GGNCC	1 cut(s)	63
PstI	CTGCAG	1 cut(s)	610
PsuI	RGATCY	4 cut(s)	293, 430, 580, 677
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	3 cut(s)	59, 339, 398
RsaNI	GTAC	3 cut(s)	58, 338, 397
RseI	CAYNNNNRTG	1 cut(s)	627
SacI	GAGCTC	1 cut(s)	332
SapI	GCTCTTC	1 cut(s)	539
SatI	GCNGC	5 cut(s)	570, 603, 606, 609, 612
Sau3AI	GATC	8 cut(s)	157, 181, 241, 293, 430, 580, 677, 741
Sau96I	GGNCC	1 cut(s)	63
ScaI	AGTACT	1 cut(s)	59
SchI	GAGTC	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	332
SetI	ASST	8 cut(s)	181, 332, 402, 455, 537, 613, 647, 709
SfcI	CTRYAG	1 cut(s)	606
SfoI	GGCGCC	1 cut(s)	355
SgrAI	CRCCGGYG	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	627
SsiI	CCGC	2 cut(s)	317, 360
SspDI	GGCGCC	1 cut(s)	353
SspMI	CTAG	1 cut(s)	675
SstI	GAGCTC	1 cut(s)	332
StyI	CCWWGG	4 cut(s)	50, 264, 333, 553
TaaI	ACNGT	2 cut(s)	274, 690
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	1 cut(s)	156
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	2 cut(s)	376, 422
TscAI	CASTG	4 cut(s)	51, 112, 124, 693
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	5 cut(s)	569, 602, 605, 608, 611
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	3 cut(s)	17, 184, 389
TspGWI	ACGGA	5 cut(s)	136, 182, 267, 369, 423
TspRI	CASTG	4 cut(s)	51, 112, 124, 693
XbaI	TCTAGA	1 cut(s)	674
XceI	RCATGY	1 cut(s)	130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	57
XspI	CTAG	1 cut(s)	675
ZrmI	AGTACT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.